• Feature: bug report utility
  • Feature: url GET parameters support all kind of search and selected overlays highlight
  • Feature: user can create custom logging configuration in file /etc/minerva/log4j.properties
  • Feature: plugin panel in admin allows to configure set of available plugins
  • Feature: import export from SBML supports RENDER package
  • Feature: import export from SBML supports MULTI package
  • Feature: API tool providing possibility to transform different types of file formats
  • Feature: current state of the browsed map is reflected in the url (position, zoom, overlays, search queries, etc.)
  • Small improvement: highlighting table rows in admin panel uses better contrast color (#706)
  • Small improvement: list of publication can be filtered by submap (#614)
  • Small improvement: size of add overlay window adjusted to show more data without scrollbars (#657)
  • Small improvement: all popup dialogs in the application have dialog specific css class names (#665)
  • Small improvement: JS plugin can create listener that is triggered on search results focus change
  • Small improvement: export to SBML includes unit factors
  • Small improvement: mesh identifiers are resolved to meshb.nlm.nih.gov urls
  • Small improvement: genetics information allows to provide information about modification on peptide level that could be visualized in MolArt
  • Small improvement: allow to control the background and font color of areas drawn from text areas in CellDesigner "layers"
  • Small improvement: config logo location is relative to the root minerva deployment directory
  • Small improvement: there is branding minerva logo in the left panel
  • Small improvement: there is possibility to download part of the map limited to set of reactions/elements
  • Small improvement: allow admin to configure parameters displayed in the left panel
  • Small improvement: arrows for Transcription Starting Sites looks more like in CellDesigner
  • Small improvement: popup window appear with info about exceeding max number of search results when necessary
  • Small improvement: plugins can define default width of the container tab
  • Small improvement: new miriam type is handled: ClinicalTrials.gov
  • Small improvement: click on the border of compartment select the compartment
  • Small improvement: there is max size of the map in configuration panel that disables upload of too big files
  • Small improvement: hitting enter on login page logs in the user (no need to click on the login button)
  • Small improvement: refresh button in overlays panel (useful when data overlays are uploaded separately in using API calls)
  • Small improvement: list of publications is downloadable
  • Small improvement: export of reactions support filtering by reaction type
  • Small improvement: 'BACK TO MAP' link is available only when guest account has proper access level
  • Small improvement: 'REQUEST AN ACCOUNT' link is available only the contact email account is provided
  • Small improvement: Plugin API allows to show/hide data overlays
  • Bug fix: Icons were sometimes not properly loaded on Safari (#661)
  • Bug fix: migration scripts are compatibile with postgres 9.3 version that is default on Ubuntu 14 (#762)
  • Bug fix: update/remove button is disabled when user has no privileges for managing overlays (#742)
  • Bug fix: when user cannot manage users information in overlays and users tab in edit project dialog is provided instead of hiding tabs (#756)
  • Bug fix: removing comments in a project asked for confirmation twice after edit project dialog for specific project was opened; closed and opened again (#697)
  • Bug fix: editing/removing project requires Map Management privilege (#681)
  • Bug fix: when removeAllListeners is called list of registered listeners is cleaned (#687)
  • Bug fix: when plugin is removed the html elements associated with it are removed as well (#686)
  • Bug fix: when creating new user default privileges are set properly (#692)
  • Bug fix: plugin can be added after plugin has been removed in admin plugin panel (#686)
  • Bug fix: too many annotations (>=100) caused misaligning in the left panel (#708)
  • Bug fix: export to svg contains viewBox info (#716)
  • Bug fix: overlays added via API couldn't be visualized after refresh (#718)
  • Bug fix: Safari sometimes cached server responses and used wrong data, for example in admin panel configuration tab (#719)
  • Bug fix: description of transcription site is centered (#720)
  • Bug fix: selecting too few parameters in export doesn't throw reportable error (#721)
  • Bug fix: providing invalid overlay id in url could break minerva (#726)
  • Bug fix: removing project that doesn't exist doesn't cause 500 error (#723)
  • Bug fix: opening map with invalid id shows proper error message (#724)
  • Bug fix: Fixing an issue where search panel was not properly resized on expansion (#682)
  • Bug fix: loading icon is not overlapping input in the search panel (#404)
  • Bug fix: position of transcription sites in genes are computed properly (#553)
  • Bug fix: REQUEST AN ACCOUNT was enabled when associated email was invalid (#626)
  • Bug fix: working with too many maps within the single session could crash connection to server (#651)
  • Bug fix: drawing corrupted heterodimer association in CellDesigner could crash map upload (#673)
  • Bug fix: export to CellDesigner align inhibition reaction properly
  • Bug fix: export/import to/from SBML handles Heterodimer Association reaction properly
  • Bug fix: logo doesn't need to be square
  • Bug fix: when clicking on a search link (in overview window), input in the left tab was not modified
  • Bug fix: in admin panel changing of genome version is blocking interface until data about url is retrieved
  • Bug fix: export of species inside complex into CellDesigner was causing problems when reading the file in CellDesigner
  • Bug fix: export to SBGN did not export compartments
  • Bug fix: export of complex states to SBGN did not work
  • Bug fix: type of the data overlay can be defined in the file content (useful when uploading genetic variants)
  • Bug fix: CLEAR button clears comment checkbox if necessary
  • Bug fix: minerva install problem on ubuntu 18 fixed