Skip to content

GitLab

type id for residue should base on the species type id

42 jobs for 1478-proper-complex-child-relation-in-sbml in 60 minutes and 2 seconds (queued for 6 seconds)
13758054
1 related merge request: !1429 Resolve "proper complex-child relation in sbml"
Name Stage Failure
failed
test:backend:annotation:jdk-11 Test 
	at java.base/java.security.AccessController.doPrivileged(Native Method)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.getChainedException(HttpURLConnection.java:1957)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1525)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1509)
	at java.base/sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:245)
	at lcsb.mapviewer.annotation.cache.WebPageDownloader$1Task.call(WebPageDownloader.java:134)
	... 5 more
Caused by: java.io.IOException: Server returned HTTP response code: 500 for URL: https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?searchCategory=CHEBI+NAME&maximumResults=200&starsCa
Job's log exceeded limit of 4194304 bytes.
Job execution will continue but no more output will be collected.
failed
test:backend:annotation:jdk-8 Test The script exceeded the maximum execution time set for the job 
	at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
	at sun.net.www.protocol.https.HttpsURLConnectionImpl.getResponseCode(HttpsURLConnectionImpl.java:347)
	at lcsb.mapviewer.annotation.cache.WebPageDownloader$1Task.call(WebPageDownloader.java:114)
	... 5 more
2022-02-02 11:24:24,779 ERROR [pool-1168-thread-1] (WebPageDownloader.java:137) - Problem with fetching url (3 tries): https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=CHEBI%3A35697
2022-02-02 11:24:24,780  WARN [main] (StitchAnnotatorImpl.java:78) - No ChEBI element retrieved from ChEBI ID: [bqbiol:isDescribedBy] CHEBI:CHEBI:35697
2022-02-02 11:24:24,784  INFO [main] (HikariDataSource.java:350) - HikariPool-23 - Shutdown initiated...
2022-02-02 11:24:24,793  INFO [main] (HikariDataSource.java:352) - HikariPool-23 - Shutdown completed.
ERROR: Job failed: execution took longer than 1h0m0s seconds
failed
test:backend:annotation:jdk-11-hsql Test 
	at org.springframework.test.context.junit4.SpringJUnit4ClassRunner.runChild(SpringJUnit4ClassRunner.java:97) [spring-test-5.0.9.RELEASE.jar:5.0.9.RELEASE]
	at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290) [junit-4.12.jar:4.12]
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71) [junit-4.12.jar:4.12]
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288) [junit-4.12.jar:4.12]
	at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58) [junit-4.12.jar:4.12]
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268) [junit-4.12.jar:4.12]
	at org.springframework.test.context.junit4.statements.RunBeforeTestClassCallbacks.evaluate(RunBeforeTestClassCallbacks.java:61) [spring-test-5.0.9.RELEASE.jar:5.0.9.RELEASE]
	at org.springframework.test.context.junit4.statements.RunAfterTestClassCallbacks.evaluate(RunAfterTestCla
Job's log exceeded limit of 4194304 bytes.
Job execution will continue but no more output will be collected.