Merge branch '1602-sbgn-compartment-ref' into 'devel_16.0.x'

set compartmentRef when exporting to SBGN

See merge request !1397
41 jobs for devel_16.0.x in 64 minutes and 1 second (queued for 9 seconds)
Name Stage Failure
failed
test:backend:annotation:jdk-8 Test
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Cleaning up project directory and file based variables
ERROR: Job failed: exit code 1

failed
test:backend:converter_SBML:jdk-11 Test
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Cleaning up project directory and file based variables
ERROR: Job failed: exit code 1

failed
test:backend:annotation:jdk-11 Test
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Cleaning up project directory and file based variables
ERROR: Job failed: exit code 1

failed
test:backend:converter_CellDesigner:jdk-11 Test The script exceeded the maximum execution time set for the job
	at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:345)
at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:126)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:418)
Caused by: org.xml.sax.SAXParseException; Premature end of file.
at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)
at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source)
at lcsb.mapviewer.common.XmlParser.getXmlDocumentFromInputSource(XmlParser.java:191)
... 39 more
ERROR: Job failed: execution took longer than 1h0m0s seconds

failed
test:backend:converter_CellDesigner:jdk-8 Test The script exceeded the maximum execution time set for the job
	at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:345)
at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:126)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:418)
Caused by: org.xml.sax.SAXParseException; Premature end of file.
at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)
at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source)
at lcsb.mapviewer.common.XmlParser.getXmlDocumentFromInputSource(XmlParser.java:191)
... 47 more
ERROR: Job failed: execution took longer than 1h0m0s seconds

failed
test:backend:converter_SBML:jdk-8 Test
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Cleaning up project directory and file based variables
ERROR: Job failed: exit code 1

failed
test:backend:annotation:jdk-11-hsql Test
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Cleaning up project directory and file based variables
ERROR: Job failed: exit code 1