Merge branch '1055-copasi-does-not-preserve-elements-shape' into 'master'

Resolve "COPASI does not preserve elements shape"

Closes #1055

See merge request !1282
41 jobs for master in 31 minutes and 1 second (queued for 18 seconds)
Status Job ID Name Coverage
  Test
failed #236558
test:backend:annotation:jdk-11

00:13:35

failed #236561
test:backend:annotation:jdk-11-hsql

00:15:23

failed #236555
test:backend:annotation:jdk-8

00:12:32

passed #236564
test:backend:CellDesigner_plugin:jdk-8

00:02:34

85.1521%
passed #236552
test:backend:commons:jdk-11

00:01:55

84.3724%
passed #236551
test:backend:commons:jdk-8

00:01:53

84.3724%
passed #236578
test:backend:converter_CellDesigner:jdk-11

00:03:13

95.6598%
passed #236575
test:backend:converter_CellDesigner:jdk-8

00:04:32

95.6592%
passed #236584
test:backend:converter_graphics:jdk-11

00:04:18

73.6589%
passed #236581
test:backend:converter_graphics:jdk-8

00:03:45

73.6648%
passed #236572
test:backend:converter:jdk-11

00:01:59

61.9123%
passed #236567
test:backend:converter:jdk-8

00:01:46

62.1992%
passed #236588
test:backend:converter_SBGNML:jdk-11

00:07:22

89.0997%
passed #236589
test:backend:converter_SBGNML:jdk-11-hsql

00:06:59

89.0997%
passed #236586
test:backend:converter_SBGNML:jdk-8

00:06:58

89.0985%
passed #236593
test:backend:converter_SBML:jdk-11

00:04:04

90.317%
passed #236591
test:backend:converter_SBML:jdk-8

00:04:10

90.3158%
passed #236601
test:backend:model_command:jdk-11

00:01:43

76.8707%
passed #236599
test:backend:model_command:jdk-8

00:01:49

76.8812%
passed #236597
test:backend:model:jdk-11

00:02:23

86.1499%
passed #236595
test:backend:model:jdk-8

00:01:59

86.1511%
passed #236605
test:backend:pathvisio:jdk-11

00:03:40

85.2991%
passed #236603
test:backend:pathvisio:jdk-8

00:02:51

85.3012%
passed #236611
test:backend:persist:hsql

00:03:21

71.3494%
passed #236609
test:backend:persist:jdk-11

00:02:51

71.3494%
passed #236607
test:backend:persist:jdk-8

00:03:56

71.2048%
passed #236617
test:backend:rest:hsql

00:10:30

42.6435%
passed #236615
test:backend:rest:jdk-11

00:08:33

42.6435%
passed #236613
test:backend:rest:jdk-8

00:09:10

42.6345%
passed #236623
test:backend:service:hsql

00:10:01

60.2348%
passed #236621
test:backend:service:jdk-11

00:10:02

60.2348%
passed #236619
test:backend:service:jdk-8

00:09:28

60.2349%
passed #236628
test:backend:web:hsql

00:12:48

47.5289%
passed #236627
test:backend:web:jdk-11

00:13:21

47.5289%
passed #236625
test:backend:web:jdk-8

00:12:57

47.5289%
passed #236629
test:dependency_conflict

00:05:00

failed #236548
test:frontend

00:06:41

85.18%
passed #236630
test:mvn_changelog_version_check

00:00:33

passed #236632
test_postgres_10_compatibility

00:02:55

passed #236633
test_postgres_11_compatibility

00:03:22

passed #236631
test_postgres_9_3_compatibility

00:02:53

 
Name Stage Failure
failed
test:backend:annotation:jdk-11-hsql Test
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Cleaning up file based variables
ERROR: Job failed: exit code 1
failed
test:backend:annotation:jdk-11 Test
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Cleaning up file based variables
ERROR: Job failed: exit code 1
failed
test:backend:annotation:jdk-8 Test
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Cleaning up file based variables
ERROR: Job failed: exit code 1
failed
test:frontend Test
=============================== Coverage summary ===============================
Statements : 85.18% ( 16503/19375 )
Branches : 68.78% ( 3261/4741 )
Functions : 81.95% ( 3079/3757 )
Lines : 85.23% ( 16499/19359 )
================================================================================
npm ERR! Test failed. See above for more details.
Cleaning up file based variables
ERROR: Job failed: exit code 1