Merge branch 'buildwar-fix' into 'master'

file name depends on the version

See merge request !1244
39 jobs for master in 67 minutes and 48 seconds (queued for 16 seconds)
Name Stage Failure
failed
test:backend:web:jdk-8 Test
[ERROR] Please refer to dump files (if any exist) [date].dump, [date]-jvmRun[N].dump and [date].dumpstream.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
ERROR: Job failed: exit code 1
failed
test:backend:web:hsql Test
[ERROR] Please refer to dump files (if any exist) [date].dump, [date]-jvmRun[N].dump and [date].dumpstream.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
ERROR: Job failed: exit code 1
failed
test:backend:annotation:jdk-11 Test The script exceeded the maximum execution time set for the job
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
2020-09-04 05:21:19,450 DEBUG [main] (AnnotationTestFunctions.java:153) - File without cache: testFiles/target_mirna/target.xml
2020-09-04 05:21:19,478 WARN [main] (BigFileCache.java:517) - File is supposed to be cached but it's not there... http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
2020-09-04 05:21:19,480 WARN [Thread-9] (BigFileCache.java:394) - Missing file: ./minerva-big//21/miRTarBase_SE_WR.xls. Downloaded from: http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
ERROR: Job failed: execution took longer than 1h0m0s seconds
failed
test:backend:service:jdk-11 Test The script exceeded the maximum execution time set for the job
	at lcsb.mapviewer.annotation.cache.BigFileCache$GetHttpFileTask.call(BigFileCache.java:702) ~[annotation-16.0.0~alpha.0.jar:?]
at java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[?:?]
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) ~[?:?]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[?:?]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[?:?]
at java.lang.Thread.run(Thread.java:834) ~[?:?]
2020-09-04 05:26:18,797 WARN [main] (BigFileCache.java:517) - File is supposed to be cached but it's not there... http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
2020-09-04 05:26:18,799 WARN [Thread-4] (BigFileCache.java:394) - Missing file: ./minerva-big//56/miRTarBase_SE_WR.xls. Downloaded from: http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
ERROR: Job failed: execution took longer than 1h0m0s seconds
failed
test:backend:annotation:jdk-11-hsql Test The script exceeded the maximum execution time set for the job
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
2020-09-04 05:21:18,810 DEBUG [main] (AnnotationTestFunctions.java:153) - File without cache: testFiles/target_mirna/target.xml
2020-09-04 05:21:18,828 WARN [main] (BigFileCache.java:517) - File is supposed to be cached but it's not there... http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
2020-09-04 05:21:18,830 WARN [Thread-2] (BigFileCache.java:394) - Missing file: ./minerva-big//45/miRTarBase_SE_WR.xls. Downloaded from: http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
ERROR: Job failed: execution took longer than 1h0m0s seconds
failed
test:backend:service:hsql Test The script exceeded the maximum execution time set for the job
2020-09-04 05:26:01,409  WARN [main] (ChemicalTargetDtoConverter.java:37) - Cannot find hgnc symbol for uniprot: [bqbiol:isDescribedBy] UNIPROT:Q9UE69
2020-09-04 05:26:01,418 WARN [main] (ChemicalTargetDtoConverter.java:37) - Cannot find hgnc symbol for uniprot: [bqbiol:isDescribedBy] UNIPROT:O33199
2020-09-04 05:26:01,539 WARN [main] (ChemicalTargetDtoConverter.java:37) - Cannot find hgnc symbol for uniprot: [bqbiol:isDescribedBy] UNIPROT:O33199
2020-09-04 05:26:01,557 DEBUG [main] (DrugService.java:246) - Caching drug queries...
2020-09-04 05:26:01,583 ERROR [pool-560-thread-1] (WebPageDownloader.java:131) - Problem with fetching url (3 tries): https://dapi.lcsb.uni.lu/api/users/isAuthenticated
2020-09-04 05:26:02,362 DEBUG [main] (ChemicalService.java:126) - Caching chemical queries...
2020-09-04 05:26:02,369 WARN [main] (BigFileCache.java:517) - File is supposed to be cached but it's not there... http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
2020-09-04 05:26:02,371 WARN [Thread-4] (BigFileCache.java:394) - Missing file: ./minerva-big//70/miRTarBase_SE_WR.xls. Downloaded from: http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
ERROR: Job failed: execution took longer than 1h0m0s seconds
failed
test:backend:annotation:jdk-8 Test The script exceeded the maximum execution time set for the job
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
2020-09-04 05:20:57,516 DEBUG [main] (AnnotationTestFunctions.java:153) - File without cache: testFiles/target_mirna/target.xml
2020-09-04 05:20:57,540 WARN [main] (BigFileCache.java:517) - File is supposed to be cached but it's not there... http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
2020-09-04 05:20:57,542 WARN [Thread-3] (BigFileCache.java:394) - Missing file: ./minerva-big//51/miRTarBase_SE_WR.xls. Downloaded from: http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
ERROR: Job failed: execution took longer than 1h0m0s seconds
failed
test:backend:service:jdk-8 Test The script exceeded the maximum execution time set for the job
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180) ~[?:1.8.0_212]
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293) ~[?:1.8.0_212]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) ~[?:1.8.0_212]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) ~[?:1.8.0_212]
at java.lang.Thread.run(Thread.java:748) ~[?:1.8.0_212]
2020-09-04 05:24:35,884 DEBUG [main] (MiRNAService.java:138) - check mirna target: [[bqbiol:isDescribedBy] ENTREZ:7415:lcsb.mapviewer.annotation.services.annotators.HgncAnnotator]
2020-09-04 05:24:35,889 WARN [main] (BigFileCache.java:517) - File is supposed to be cached but it's not there... http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
2020-09-04 05:24:35,891 WARN [Thread-5] (BigFileCache.java:394) - Missing file: ./minerva-big//57/miRTarBase_SE_WR.xls. Downloaded from: http://mirtarbase.mbc.nctu.edu.tw/cache/download/6.1/miRTarBase_SE_WR.xls
ERROR: Job failed: execution took longer than 1h0m0s seconds
failed
test:backend:web:jdk-11 Test
[ERROR] Please refer to dump files (if any exist) [date].dump, [date]-jvmRun[N].dump and [date].dumpstream.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
ERROR: Job failed: exit code 1