core merge requestshttps://git-r3lab.uni.lu/minerva/core/-/merge_requests2018-10-02T23:24:33+02:00https://git-r3lab.uni.lu/minerva/core/-/merge_requests/438Resolve "logo is forced to dimensions of square"2018-10-02T23:24:33+02:00Piotr GawronResolve "logo is forced to dimensions of square"Closes #527Closes #527v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/437Resolve "logo location"2018-10-02T17:27:15+02:00Piotr GawronResolve "logo location"Closes #520Closes #520v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/436Resolve "SVG and PDF export not working properly"2018-10-02T16:47:32+02:00Piotr GawronResolve "SVG and PDF export not working properly"Closes #525Closes #525https://git-r3lab.uni.lu/minerva/core/-/merge_requests/435ensembl API was upgraded2018-10-02T16:00:03+02:00Piotr Gawronensembl API was upgradedhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/43412.1.0~beta.2 into master2018-10-02T15:01:14+02:00Piotr Gawron12.1.0~beta.2 into masterhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/433changelog updated2018-10-02T14:23:52+02:00Piotr Gawronchangelog updatedhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/432Resolve "problem with plugin tab with side"2018-10-02T10:15:06+02:00Piotr GawronResolve "problem with plugin tab with side"Closes #524Closes #524https://git-r3lab.uni.lu/minerva/core/-/merge_requests/431Resolve "Users privileges are not mirrored correctly"2018-10-02T09:56:13+02:00Piotr GawronResolve "Users privileges are not mirrored correctly"Closes #522Closes #522https://git-r3lab.uni.lu/minerva/core/-/merge_requests/430Resolve "ldap uid parameter should be configurable"2018-10-01T14:16:48+02:00Piotr GawronResolve "ldap uid parameter should be configurable"Closes #523Closes #523https://git-r3lab.uni.lu/minerva/core/-/merge_requests/429Resolve "Adding new user error"2018-10-01T11:20:54+02:00Piotr GawronResolve "Adding new user error"Closes #521Closes #521https://git-r3lab.uni.lu/minerva/core/-/merge_requests/425Resolve "Plugin configuration in the admin panel"2018-10-01T10:45:09+02:00Piotr GawronResolve "Plugin configuration in the admin panel"Closes #491Closes #491v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/428Resolve "remove reference to postgres user from migration script"2018-10-01T10:42:00+02:00Piotr GawronResolve "remove reference to postgres user from migration script"Closes #519Closes #519https://git-r3lab.uni.lu/minerva/core/-/merge_requests/427fix on reactome connector test after the database content changed2018-10-01T10:30:45+02:00Piotr Gawronfix on reactome connector test after the database content changedhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/424Resolve "log4j configuration should be exposed to the user"2018-09-27T15:26:17+02:00Piotr GawronResolve "log4j configuration should be exposed to the user"Closes #516Closes #516v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/426Variants to molart2018-09-27T13:50:48+02:00David HokszaVariants to molarthttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/423Resolve "Allow to control the background and font of areas drawn from text ar...2018-09-26T14:38:43+02:00Piotr GawronResolve "Allow to control the background and font of areas drawn from text areas in CellDesigner "layers""Closes #489Closes #489v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/421Resolve "Session expiry notification"2018-09-25T15:14:45+02:00Piotr GawronResolve "Session expiry notification"Closes #172Closes #172v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/420Resolve "gene variants in molart"2018-09-24T17:29:15+02:00Piotr GawronResolve "gene variants in molart"Closes #500
Hi @david.hoksza,
This merge request will give you access to amino acid change for gene variant.
To get information about gene variant for molart integration you would have to do something similar to:
```
map...Closes #500
Hi @david.hoksza,
This merge request will give you access to amino acid change for gene variant.
To get information about gene variant for molart integration you would have to do something similar to:
```
map.getTopMap().getVisibleDataOverlays().then(function(dataOverlays){
var overlay = dataOverlays[0];
return overlay.getFullAliasById(elementId);
}).then(function(aliasOverlayData){
// here you have access to all gene variants for element elementId that are available in
// the first visible data overlay (there is aminoAcidChange property defined for a single variant)
aliasOverlayData.getGeneVariants()
});
```
In the attachment you can find example file that can be uploaded into the system:
[gene_variants_aa_change.txt](/uploads/3483c1d5ae31c26344db3176b990a230/gene_variants_aa_change.txt)v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/419Resolve "Handling MeSH identifiers"2018-09-24T15:39:15+02:00Piotr GawronResolve "Handling MeSH identifiers"Closes #341Closes #341v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/415Resolve "allow admins to configure parameters displayed in the left panel"2018-09-24T14:28:54+02:00Piotr GawronResolve "allow admins to configure parameters displayed in the left panel"Closes #53Closes #53v12.2.0~beta.0