core merge requestshttps://git-r3lab.uni.lu/minerva/core/-/merge_requests2019-03-08T15:31:29+01:00https://git-r3lab.uni.lu/minerva/core/-/merge_requests/692Resolve "provide css class selectors for some elements on the map"2019-03-08T15:31:29+01:00Piotr GawronResolve "provide css class selectors for some elements on the map"Closes #701Closes #701v13.1.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/691current zoom level is used when no zoom level is provided2019-03-08T12:39:16+01:00Piotr Gawroncurrent zoom level is used when no zoom level is providedCloses #702Closes #702v13.1.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/690Resolve "plugin functionalities"2019-03-08T12:13:23+01:00Piotr GawronResolve "plugin functionalities"Dear @david.hoksza,
I implemented all requested functionalities for plugin API. However, I'm not able to provide better Promise responses in setCenter/setZoom functions because those functions call external library that is not using pro...Dear @david.hoksza,
I implemented all requested functionalities for plugin API. However, I'm not able to provide better Promise responses in setCenter/setZoom functions because those functions call external library that is not using promises. Even though I think you should be able to use other provided methods to achieve the same result.
Closes #702v13.1.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/689Resolve "Overlapping compartments in non-layout SBML upload"2019-03-07T14:05:00+01:00Piotr GawronResolve "Overlapping compartments in non-layout SBML upload"Closes #736Closes #736v12.2.0~beta.3https://git-r3lab.uni.lu/minerva/core/-/merge_requests/688Resolve "Align the boxes in right top corner of map"2019-03-07T11:33:32+01:00Piotr GawronResolve "Align the boxes in right top corner of map"Closes #733Closes #733v12.2.0~beta.3https://git-r3lab.uni.lu/minerva/core/-/merge_requests/687hideProcessing wasn't called in the right places2019-03-07T11:27:27+01:00Piotr GawronhideProcessing wasn't called in the right placesCloses #734Closes #734v12.2.0~beta.3https://git-r3lab.uni.lu/minerva/core/-/merge_requests/686Resolve "Publication list does not provide correct hyperlinks for invalid Pub...2019-03-07T11:14:12+01:00Piotr GawronResolve "Publication list does not provide correct hyperlinks for invalid PubMed"Closes #735Closes #735v12.2.0~beta.3https://git-r3lab.uni.lu/minerva/core/-/merge_requests/685fetching information about publication with invalid (non numeric) pubmed id t...2019-03-06T17:18:03+01:00Piotr Gawronfetching information about publication with invalid (non numeric) pubmed id triggered exceptionCloses #737Closes #737v12.2.0~beta.3https://git-r3lab.uni.lu/minerva/core/-/merge_requests/684Updated CHANGELOG2019-03-06T16:13:05+01:00Piotr GawronUpdated CHANGELOGhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/683hopefully the last time I fix Safari jQuery icons2019-03-06T16:36:59+01:00Sascha Herzingerhopefully the last time I fix Safari jQuery iconsCloses #661
@piotr.gawron I genuinely believe that the Safari engine has a bug here. I spend a good part of yesterday to validate this assumption, so it's not just a gut feeling.
As hacky as this solution is, it seems to work.
Can you...Closes #661
@piotr.gawron I genuinely believe that the Safari engine has a bug here. I spend a good part of yesterday to validate this assumption, so it's not just a gut feeling.
As hacky as this solution is, it seems to work.
Can you maybe deploy this on minerva-dev and have Ewa/Marek validate whether it works for them before you accept this MR? I don't ever want this issue to be open againv12.2.0~beta.3Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/682WIP: Resolve "SBGN - activity flow"2021-03-22T14:15:55+01:00Sascha HerzingerWIP: Resolve "SBGN - activity flow"Closes #486
For reference: http://sbgn.github.io/sbgn/referencecards
TODO:
* [ ] Add NotOperator to model
* [x] ~~Add DelayOperator to model~~
* [ ] Add Activity element to model
* [ ] Add Perturbation element to model
* [ ] Draw A...Closes #486
For reference: http://sbgn.github.io/sbgn/referencecards
TODO:
* [ ] Add NotOperator to model
* [x] ~~Add DelayOperator to model~~
* [ ] Add Activity element to model
* [ ] Add Perturbation element to model
* [ ] Draw Auxiliary Units according to SBGN standard
* [x] Support the concept of an equivalence arc
* [x] ~~Support submaps~~
* [x] ~~Discuss the difference between AF Compartment and Complex~~
* [ ] Write a bazillion testsv13.1.0~beta.0Sascha HerzingerSascha Herzingerhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/681Resolve "Gene mapping upload progress counter freezes at 0 until upload finis...2019-02-28T13:46:31+01:00Piotr GawronResolve "Gene mapping upload progress counter freezes at 0 until upload finishes"Closes #728Closes #728v13.1.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/680Annotators issue2019-02-28T08:34:15+01:00Piotr GawronAnnotators issuehttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/679Resolve "make lcsb logo configurable"2019-02-28T08:33:56+01:00Piotr GawronResolve "make lcsb logo configurable"Closes #731Closes #731v13.1.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/678Merge 12.2.0 beta.2 into master2019-02-27T12:45:03+01:00Piotr GawronMerge 12.2.0 beta.2 into masterhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/67712.2.0~beta.2 into master2019-02-27T11:06:54+01:00Piotr Gawron12.2.0~beta.2 into masterhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/676Devel 12.2.0~beta.2 into master2019-02-27T11:00:11+01:00Piotr GawronDevel 12.2.0~beta.2 into masterhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/675Resolve "For an archived map the default overlay is Empty"2019-02-27T10:49:10+01:00Piotr GawronResolve "For an archived map the default overlay is Empty"Closes #684Closes #684v12.2.0~beta.2https://git-r3lab.uni.lu/minerva/core/-/merge_requests/674call StartupBean.init after DI via @PostConstruct2019-02-27T10:45:17+01:00Sascha Herzingercall StartupBean.init after DI via @PostConstructCloses #694
@piotr.gawron It should work now. I see the log entries on startup.Closes #694
@piotr.gawron It should work now. I see the log entries on startup.v12.2.0~beta.2Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/673listener for removal confirmation is added on object creation not refresh2019-02-26T16:42:49+01:00Piotr Gawronlistener for removal confirmation is added on object creation not refreshCloses #697Closes #697v12.2.0~beta.2