core merge requestshttps://git-r3lab.uni.lu/minerva/core/-/merge_requests2019-01-15T14:38:34+01:00https://git-r3lab.uni.lu/minerva/core/-/merge_requests/564WIP: Resolve "Implement Spring Security"2019-01-15T14:38:34+01:00Sascha HerzingerWIP: Resolve "Implement Spring Security"Closes #563
This is a WIP. Do not merge.
@piotr.gawron Spring Security is now active, does handle basic Dao authentication and manages the application security on an API level.
TODO:
* [ ] LDAP AuthenticationProvider
* [ ] Remove al...Closes #563
This is a WIP. Do not merge.
@piotr.gawron Spring Security is now active, does handle basic Dao authentication and manages the application security on an API level.
TODO:
* [ ] LDAP AuthenticationProvider
* [ ] Remove all custom security from the rest-api module
* [ ] Add interface level security and filtering to the service module
* [ ] Make all unit tests passv14.0.0~alpha.0Sascha HerzingerSascha Herzingerhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/613WIP: New Minerva Security Layer2019-07-22T19:18:09+02:00Sascha HerzingerWIP: New Minerva Security LayerCloses #636,#624,#629,#625,#387,#637
Closes #636,#624,#629,#625,#387,#637
v14.0.0~alpha.0Sascha HerzingerSascha Herzingerhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/642WIP: The refactoring2019-06-18T10:55:52+02:00Sascha HerzingerWIP: The refactoringThis is just a WIP MR to aggregate results/issues of the upcoming refactoring.
If the refactoring takes longer than expected we at least still have a working master branch for intermediate releases.
* [ ] #493
* [ ] #567
* [x] #2...This is just a WIP MR to aggregate results/issues of the upcoming refactoring.
If the refactoring takes longer than expected we at least still have a working master branch for intermediate releases.
* [ ] #493
* [ ] #567
* [x] #291
* [ ] #566
* [ ] #688
* [ ] #689
(Optional)
* [x] #564 (requires #291)v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/773Resolve "move from log4j to log4j2"2019-05-16T16:15:46+02:00Piotr GawronResolve "move from log4j to log4j2"Closes #291Closes #291v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/775Resolve "remove disclaimer from debian package"2019-05-16T17:23:17+02:00Piotr GawronResolve "remove disclaimer from debian package"Closes #811Closes #811v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/776Resolve "Biocompendium problems"2019-05-16T17:58:45+02:00Piotr GawronResolve "Biocompendium problems"Closes #32Closes #32v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/777Resolve "make code compatible with java 11"2019-05-16T20:30:29+02:00Piotr GawronResolve "make code compatible with java 11"Closes #810Closes #810v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/779Resolve "Debian package: use dbconfig-common"2019-05-21T18:53:16+02:00Piotr GawronResolve "Debian package: use dbconfig-common"Closes #469Closes #469v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/782Resolve "Replace deprecated APIs"2019-05-24T19:57:12+02:00Piotr GawronResolve "Replace deprecated APIs"Closes #688Closes #688v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/783replaced C3P0 with Hikari2019-05-22T18:03:41+02:00Sascha Herzingerreplaced C3P0 with HikariCloses #564Closes #564v14.0.0~alpha.0Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/merge_requests/785Resolve "remove Reaction.getCenterLine method"2019-05-29T18:02:44+02:00Piotr GawronResolve "remove Reaction.getCenterLine method"Closes #30
@david.hoksza, this MR should also resolve the problem with reaction rectangles appearing in weird places. Give it a try and let me if it's working as expected.
Btw. I forgot to mention but minerva (master branch) require...Closes #30
@david.hoksza, this MR should also resolve the problem with reaction rectangles appearing in weird places. Give it a try and let me if it's working as expected.
Btw. I forgot to mention but minerva (master branch) requires tomcat8 - one of the dependencies (spring) might crash on tomcat7 or below.v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/786Resolve "files exported as CellDesigner should be valid sbml files"2019-05-29T20:18:15+02:00Piotr GawronResolve "files exported as CellDesigner should be valid sbml files"Closes #831Closes #831v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/806Resolve "caching should be active by default"2019-06-07T19:01:30+02:00Piotr GawronResolve "caching should be active by default"Closes #202Closes #202v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/809Resolve "A confirmation before removing an overlay in admin panel"2019-06-07T19:01:53+02:00Piotr GawronResolve "A confirmation before removing an overlay in admin panel"Closes #696Closes #696v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/810Resolve "Make the input of new overlay name mandatory"2019-06-07T19:24:34+02:00Piotr GawronResolve "Make the input of new overlay name mandatory"Closes #698Closes #698v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/811Resolve "Logic Gates with over 2 inputs"2019-06-12T15:49:56+02:00Piotr GawronResolve "Logic Gates with over 2 inputs"Closes #560Closes #560v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/816Resolve "miRNA target interface: Entrez vs Gene name link"2019-06-12T16:19:57+02:00Piotr GawronResolve "miRNA target interface: Entrez vs Gene name link"Closes #66Closes #66v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/817Resolve "Inconsistent results from reverse search for drug/miRNA targets"2019-06-13T09:58:42+02:00Piotr GawronResolve "Inconsistent results from reverse search for drug/miRNA targets"Closes #215Closes #215v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/818Resolve "Boolean logic gate coerced to the single type"2019-06-13T17:18:02+02:00Piotr GawronResolve "Boolean logic gate coerced to the single type"Closes #794Closes #794v14.0.0~alpha.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/819Resolve "coordinates of context menu should be taken from the event not GuiCo...2019-06-14T14:57:02+02:00Piotr GawronResolve "coordinates of context menu should be taken from the event not GuiConnector"Closes #668Closes #668v14.0.0~alpha.0