core merge requestshttps://git-r3lab.uni.lu/minerva/core/-/merge_requests2019-01-10T16:36:58+01:00https://git-r3lab.uni.lu/minerva/core/-/merge_requests/566Resolve "allow showing and hiding data overlays in plugin API"2019-01-10T16:36:58+01:00Piotr GawronResolve "allow showing and hiding data overlays in plugin API"Closes #607Closes #607v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/565Resolve "Add option to disable `REQUEST AN ACCOUNT`"2019-01-08T15:08:46+01:00Piotr GawronResolve "Add option to disable `REQUEST AN ACCOUNT`"Closes #626Closes #626v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/560Resolve "add support for modifications and states in sbml export/import"2019-01-08T13:02:43+01:00Piotr GawronResolve "add support for modifications and states in sbml export/import"Closes #572
Support for modifications is implemented using SpeciesType features from multi package.
@marek.ostaszewski If you want me to implement it using Binding Sites from multi package please let me know how the data structure...Closes #572
Support for modifications is implemented using SpeciesType features from multi package.
@marek.ostaszewski If you want me to implement it using Binding Sites from multi package please let me know how the data structures inside sbml should look like.v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/553Resolve "allow to open multiple data overlays using url GET param"2018-12-27T14:06:50+01:00Piotr GawronResolve "allow to open multiple data overlays using url GET param"Closes #595Closes #595v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/548Resolve "list of publications"2018-12-20T11:45:36+01:00Piotr GawronResolve "list of publications"Closes #614Closes #614v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/513Resolve "Compartment annotation"2018-11-19T16:59:46+01:00Piotr GawronResolve "Compartment annotation"Closes #324Closes #324v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/507Resolve "Add ClinicalTrials.gov to handled MIRIAMs"2018-11-16T16:07:16+01:00Piotr GawronResolve "Add ClinicalTrials.gov to handled MIRIAMs"Closes #580Closes #580v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/506Resolve "Allow to set default width of a plugin"2018-11-16T15:43:53+01:00Piotr GawronResolve "Allow to set default width of a plugin"Closes #573Closes #573v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/505Resolve "Genomes - put "waiting icon""2018-11-15T16:17:25+01:00Piotr GawronResolve "Genomes - put "waiting icon""Closes #576Closes #576v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/496Resolve "Inform about exceeding max number of search results"2018-11-09T09:13:18+01:00Piotr GawronResolve "Inform about exceeding max number of search results"Closes #546Closes #546v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/441Resolve "api/doLogin should return cookie in response"2018-10-03T17:26:31+02:00Piotr GawronResolve "api/doLogin should return cookie in response"Closes #492Closes #492v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/439Resolve "Minerva logo in the left panel"2018-10-03T16:17:22+02:00Piotr GawronResolve "Minerva logo in the left panel"Closes #526Closes #526v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/425Resolve "Plugin configuration in the admin panel"2018-10-01T10:45:09+02:00Piotr GawronResolve "Plugin configuration in the admin panel"Closes #491Closes #491v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/424Resolve "log4j configuration should be exposed to the user"2018-09-27T15:26:17+02:00Piotr GawronResolve "log4j configuration should be exposed to the user"Closes #516Closes #516v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/423Resolve "Allow to control the background and font of areas drawn from text ar...2018-09-26T14:38:43+02:00Piotr GawronResolve "Allow to control the background and font of areas drawn from text areas in CellDesigner "layers""Closes #489Closes #489v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/421Resolve "Session expiry notification"2018-09-25T15:14:45+02:00Piotr GawronResolve "Session expiry notification"Closes #172Closes #172v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/422WIP: Resolve "Session expiry notification"2018-09-25T13:08:39+02:00Piotr GawronWIP: Resolve "Session expiry notification"Closes #172Closes #172v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/420Resolve "gene variants in molart"2018-09-24T17:29:15+02:00Piotr GawronResolve "gene variants in molart"Closes #500
Hi @david.hoksza,
This merge request will give you access to amino acid change for gene variant.
To get information about gene variant for molart integration you would have to do something similar to:
```
map...Closes #500
Hi @david.hoksza,
This merge request will give you access to amino acid change for gene variant.
To get information about gene variant for molart integration you would have to do something similar to:
```
map.getTopMap().getVisibleDataOverlays().then(function(dataOverlays){
var overlay = dataOverlays[0];
return overlay.getFullAliasById(elementId);
}).then(function(aliasOverlayData){
// here you have access to all gene variants for element elementId that are available in
// the first visible data overlay (there is aminoAcidChange property defined for a single variant)
aliasOverlayData.getGeneVariants()
});
```
In the attachment you can find example file that can be uploaded into the system:
[gene_variants_aa_change.txt](/uploads/3483c1d5ae31c26344db3176b990a230/gene_variants_aa_change.txt)v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/419Resolve "Handling MeSH identifiers"2018-09-24T15:39:15+02:00Piotr GawronResolve "Handling MeSH identifiers"Closes #341Closes #341v12.2.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/merge_requests/415Resolve "allow admins to configure parameters displayed in the left panel"2018-09-24T14:28:54+02:00Piotr GawronResolve "allow admins to configure parameters displayed in the left panel"Closes #53Closes #53v12.2.0~beta.0