Issues · minerva / core

New issue

add description of the fields `Project Disease` and `Organism`

#88 · opened May 18, 2017 by Piotr Gawron v11.0.0 enhancement
- CLOSED
- 1
- 0
updated Jul 10, 2017
Rest API should follow google guidlines

#90 · opened May 29, 2017 by Piotr Gawron enhancement
- CLOSED
- 1
- 0
updated Jun 09, 2017
missing methods for JS app API

#91 · opened May 29, 2017 by Piotr Gawron enhancement
- CLOSED
- 2
- 0
updated May 31, 2017
left panel

#94 · opened May 29, 2017 by Piotr Gawron enhancement
- CLOSED
- 1
updated Jun 15, 2017
upload of sbml

#95 · opened May 29, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Feb 16, 2018
search by chemical names

#96 · opened May 29, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Jan 17, 2018
data upload

#97 · opened May 29, 2017 by Piotr Gawron v11.0.0 enhancement
- CLOSED
- 1
- 0
updated Jun 30, 2017
resource link version should inlclude git commit version

#98 · opened May 29, 2017 by Piotr Gawron enhancement
- CLOSED
- 1
- 0
updated Jun 12, 2017
info about loading data from server

#99 · opened May 29, 2017 by Piotr Gawron enhancement
- CLOSED
- 1
- 0
updated May 29, 2017
data overlays grouping

#102 · opened May 31, 2017 by Piotr Gawron duplicate enhancement
- CLOSED
- 1
updated Jul 19, 2018
repositioning data overlays

#103 · opened May 31, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 14, 2018
gzip emails if there are too big

#105 · opened May 31, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 1
updated Jan 26, 2018
Improve error reporting

#106 · opened May 31, 2017 by Piotr Gawron enhancement
- CLOSED
- 1
- 0
updated Jun 12, 2017
new JS API calls

#112 · opened Jun 07, 2017 by Piotr Gawron Plugin API enhancement
- CLOSED
- 1
- 0
updated Jun 09, 2017
prevent creation of account login with whitespace in it

#48 · opened Oct 07, 2016 by Piotr Gawron BUG enhancement
- CLOSED
- 0
updated Jun 09, 2017
overlay coloring

#46 · opened Oct 06, 2016 by Piotr Gawron enhancement
- CLOSED
- 0
updated Jun 09, 2017
when highligting element that doesn't exist throw an error

#118 · opened Jun 12, 2017 by Piotr Gawron v11.0.0 Plugin API enhancement
- CLOSED
- 1
- 0
updated Jun 22, 2017
JS API control over sufraces

#122 · opened Jun 15, 2017 by Piotr Gawron Plugin API enhancement
- CLOSED
- 1
- 0
updated Jun 16, 2017
Search tab

#123 · opened Jun 15, 2017 by Piotr Gawron v11.0.0 enhancement
- CLOSED
- 1
- 0
updated Jul 10, 2017
Login

#124 · opened Jun 15, 2017 by Piotr Gawron enhancement
- CLOSED
- 1
- 0
updated Jun 22, 2017
Project tab

#125 · opened Jun 15, 2017 by Piotr Gawron enhancement
- CLOSED
- 1
- 0
updated Jun 20, 2017
Submaps tab

#126 · opened Jun 15, 2017 by Piotr Gawron v11.0.0 enhancement
- CLOSED
- 1
- 0
updated Jul 10, 2017
Clicking on map element

#127 · opened Jun 15, 2017 by Piotr Gawron v11.0.0 enhancement
- CLOSED
- 1
- 0
updated Jul 04, 2017
Admin link

#129 · opened Jun 15, 2017 by Piotr Gawron enhancement
- CLOSED
- 1
- 0
updated Jun 20, 2017
semantic zoom

#130 · opened Jun 16, 2017 by Piotr Gawron enhancement
- CLOSED
- 1
updated Oct 05, 2018
Export > Model should be Export > Map

#135 · opened Jul 06, 2017 by Alberto Noronha v11.0.0 enhancement
- CLOSED
- 1
- 3
updated Aug 03, 2017
provide export to SBtab

#137 · opened Jul 06, 2017 by Piotr Gawron enhancement
- 0
updated Jul 06, 2017
Continous integration

#138 · opened Jul 10, 2017 by Piotr Gawron duplicate enhancement
- CLOSED
- 1
updated Aug 06, 2018
tair database

#142 · opened Jul 12, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Feb 19, 2018
file format transformation tool

#143 · opened Jul 12, 2017 by Piotr Gawron v12.2.0~beta.0 enhancement
- CLOSED
- 1
updated Oct 23, 2018
publication list should be searchable

#144 · opened Jul 18, 2017 by Piotr Gawron v11.0.0 enhancement
- CLOSED
- 1
- 0
updated Jul 20, 2017
Create send bug report utility when exception is thrown in client JS.

#162 · opened Jul 20, 2017 by Piotr Gawron v12.2.0~beta.0 enhancement
- CLOSED
- 0
updated Jan 23, 2019
Lef panel - User data layout

#166 · opened Jul 21, 2017 by Marek Ostaszewski v16.0.0 enhancement graphics; css; layout
- 2
updated Dec 03, 2019
Session expiry notification

#172 · opened Jul 21, 2017 by Marek Ostaszewski v12.2.0~beta.0 enhancement
- CLOSED
- 2
- 5
updated Sep 25, 2018
Project info - log in link

#174 · opened Jul 21, 2017 by Marek Ostaszewski v11.0.0 duplicate enhancement
- CLOSED
- 1
updated Jul 21, 2017
opening data overlay

#189 · opened Jul 27, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Dec 05, 2017
clicking on surface should open bubble

#191 · opened Jul 31, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Jan 26, 2018
plugin API 31 of 31 tasks completed

#192 · opened Aug 01, 2017 by Piotr Gawron v12.0.0 Plugin API enhancement
- CLOSED
- 1
- 0
updated Jan 09, 2018
custom minerva data format 0 of 4 tasks completed

#194 · opened Aug 01, 2017 by Piotr Gawron enhancement won't fix
- CLOSED
- 1
updated Aug 29, 2019
Continous integration tests 3 of 4 tasks completed

#207 · opened Sep 08, 2017 by Piotr Gawron v12.2.0~beta.0 enhancement
- CLOSED
- 2
- 0
updated Sep 13, 2018
Continous integration build 2 of 2 tasks completed

#208 · opened Sep 08, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Jan 25, 2018
build RPM package

#218 · opened Oct 12, 2017 by Piotr Gawron v11.1.0 enhancement
- CLOSED
- 0
updated Jun 12, 2018
list of active users

#219 · opened Oct 13, 2017 by Piotr Gawron enhancement
- 0
updated Oct 17, 2017
when removing comment add possibility to give a reason

#220 · opened Oct 18, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Jan 26, 2018
use of openjdk in deb package

#223 · opened Oct 20, 2017 by Piotr Gawron v13.0.0 enhancement
- CLOSED
- 2
updated May 06, 2019
create a confirm button when removing data overlay

#224 · opened Oct 26, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Jan 26, 2018
User should be able to change his data

#225 · opened Nov 07, 2017 by Piotr Gawron enhancement
- 0
updated Nov 07, 2017
enhancements to plugin API 0 of 13 tasks completed

#229 · opened Nov 08, 2017 by Piotr Gawron Plugin API enhancement
- 0
updated Nov 08, 2017
description of chemical panel refers to Parkinson Disease

#240 · opened Dec 06, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Jan 26, 2018
overlay data should provide possibility to distinguish submaps

#242 · opened Dec 13, 2017 by Aishwarya Alex v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Jan 25, 2018
handle trigger reaction in sbgn way

#243 · opened Dec 13, 2017 by Aishwarya Alex v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Feb 16, 2018
data overlay should support element id

#244 · opened Dec 13, 2017 by Aishwarya Alex v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Feb 22, 2018
when loading data in search tab there should have "loading" icon

#247 · opened Dec 21, 2017 by Piotr Gawron v12.0.0 enhancement graphics; css; layout
- CLOSED
- 1
- 0
updated Jan 25, 2018
link to admin panel

#250 · opened Dec 22, 2017 by Piotr Gawron enhancement
- CLOSED
- 3
updated Nov 07, 2019
Configurable default permissions

#252 · opened Dec 28, 2017 by Nils Christian v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Feb 16, 2018
list of submaps should be scrollable

#259 · opened Jan 18, 2018 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
updated Jan 25, 2018
transparency level of overlay

#266 · opened Jan 31, 2018 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Feb 16, 2018
add password reset functionality

#275 · opened Feb 06, 2018 by Piotr Gawron v15.1.0~beta.0 enhancement
- CLOSED
- 1
- 0
updated Jun 19, 2020
add center button on the map

#276 · opened Feb 07, 2018 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Feb 16, 2018
Search and zoom function

#278 · opened Feb 08, 2018 by Kerstin Neininger enhancement
- 2
updated Feb 14, 2018
Account request - prefilled text

#280 · opened Feb 09, 2018 by Kerstin Neininger v12.0.0 enhancement
- CLOSED
- 1
- 2
updated Feb 16, 2018
allow multiple x-frame domains

#284 · opened Feb 14, 2018 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 0
updated May 25, 2018
sbml function visualization

#286 · opened Feb 16, 2018 by Piotr Gawron v12.0.0 SBML enhancement
- CLOSED
- 1
- 0
updated Mar 21, 2018
Additional column: submap reference in publication list

#298 · opened Feb 20, 2018 by Kerstin Neininger v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 14, 2018
alternative to google maps api way of visualizing maps

#301 · opened Feb 21, 2018 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 0
updated May 25, 2018
Duration of text notification (mouseover) in overlay tab

#318 · opened Mar 05, 2018 by Kerstin Neininger v12.0.0 enhancement
- CLOSED
- 3
updated May 25, 2018
Admin panel: save annotator and validator settings

#323 · opened Mar 07, 2018 by Marek Ostaszewski v16.0.0 enhancement
- 3
updated Dec 03, 2019
Compartment annotation

#324 · opened Mar 07, 2018 by Kerstin Neininger v12.2.0~beta.2 enhancement
- CLOSED
- 1
- 4
updated Feb 26, 2019
Admin panel: structured log

#325 · opened Mar 07, 2018 by Marek Ostaszewski v15.0.0~alpha.0 enhancement graphics; css; layout
- CLOSED
- 1
- 1
updated Nov 15, 2019
Re-organize compartments in the generated layout

#326 · opened Mar 08, 2018 by Marek Ostaszewski v15.0.0~alpha.0 SBML enhancement
- CLOSED
- 1
- 0
updated Nov 15, 2019
reduce number of connections in the pool

#331 · opened Mar 12, 2018 by Piotr Gawron v12.0.0 dev-todo enhancement
- CLOSED
- 1
- 0
updated Mar 14, 2018
plugin API should allow to store user data

#333 · opened Mar 12, 2018 by Piotr Gawron v12.0.0 Plugin API Rest API enhancement
- CLOSED
- 1
- 0
updated Mar 16, 2018
add additional miriam types

#337 · opened Mar 14, 2018 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 21, 2018
"Evidence text" annotation

#338 · opened Mar 14, 2018 by Kerstin Neininger v12.1.0 enhancement won't fix
- CLOSED
- 4
updated Jul 31, 2018
Handling MeSH identifiers

#341 · opened Mar 19, 2018 by Marek Ostaszewski v12.2.0~beta.0 enhancement
- CLOSED
- 1
- 0
updated Sep 24, 2018
Select mode - export to CellDesigner

#348 · opened Mar 21, 2018 by Marek Ostaszewski v15.0.0~alpha.0 enhancement performance
- CLOSED
- 1
- 0
updated Nov 15, 2019
Display of Minerva version

#356 · opened Mar 28, 2018 by Kerstin Neininger v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 28, 2018
"UNKNOWN DISEASE MAP"

#357 · opened Mar 28, 2018 by Kerstin Neininger v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 28, 2018
Configuration tab

#362 · opened Mar 28, 2018 by Kerstin Neininger v12.0.0 enhancement
- CLOSED
- 3
updated Mar 30, 2018
Reach default map from admin panel

#363 · opened Mar 28, 2018 by Kerstin Neininger v12.0.0 enhancement
- CLOSED
- 2
updated May 04, 2018
list of properties visualized in left panel should be configurable

#367 · opened Apr 04, 2018 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Apr 05, 2018
parse reaction stochiometry

#368 · opened Apr 04, 2018 by Piotr Gawron v12.0.0 SBML enhancement
- CLOSED
- 1
- 0
updated Apr 05, 2018
Expand protein information (left panel)

#369 · opened Apr 04, 2018 by Kerstin Neininger v12.1.0 enhancement won't fix
- CLOSED
- 4
updated Jul 26, 2018
Genes annotations don't show

#370 · opened Apr 05, 2018 by Romain Tching v12.1.0 enhancement
- CLOSED
- 1
- 2
updated Jul 13, 2018
database configuration should be outside war file

#381 · opened Apr 10, 2018 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 0
updated May 25, 2018
LDAP authentication

#386 · opened Apr 16, 2018 by Nils Christian v12.1.0 enhancement
- CLOSED
- 1
- 0
updated Jul 18, 2018
use bcrypt for password hashes

#387 · opened Apr 16, 2018 by Nils Christian v14.0.0~alpha.0 enhancement
- CLOSED
- 2
- 0
updated Jul 22, 2019
use database migration framework

#389 · opened Apr 16, 2018 by Nils Christian v12.1.0 enhancement
- CLOSED
- 2
- 2
updated Jul 31, 2018
Search results - description of a group

#410 · opened May 09, 2018 by Marek Ostaszewski v12.1.0 enhancement
- CLOSED
- 0
updated Jun 15, 2018
Terms of use

#417 · opened May 25, 2018 by Piotr Gawron v11.1.0 enhancement
- CLOSED
- 0
updated Jun 12, 2018
annotations from RHEA

#422 · opened Jun 08, 2018 by Piotr Gawron v12.1.0 enhancement
- CLOSED
- 1
updated Sep 04, 2018
Protein annotations differ

#423 · opened Jun 08, 2018 by Kerstin Neininger v12.1.0 enhancement
- CLOSED
- 1
updated Jun 14, 2018
Font sizes differ within complexes

#436 · opened Jun 22, 2018 by Kerstin Neininger enhancement
- 0
updated Jun 22, 2018
Suggestions for enhancement (v12)

#447 · opened Jun 27, 2018 by Kerstin Neininger v14.0.0~alpha.0 enhancement
- CLOSED
- 1
- 0
updated Jul 26, 2019
"Delay": Map to Admin panel

#448 · opened Jun 27, 2018 by Kerstin Neininger enhancement
- CLOSED
- 1
updated Nov 07, 2019
allow plugins to access information about active submap

#454 · opened Jul 02, 2018 by Piotr Gawron v12.1.0 enhancement
- CLOSED
- 1
- 0
updated Sep 05, 2018
Functionality to update Terms of Service

#466 · opened Jul 25, 2018 by Marek Ostaszewski v12.1.0 enhancement
- CLOSED
- 1
- 0
updated Aug 02, 2018
'Reduced modulation' edge transfer to Minerva

#480 · opened Aug 21, 2018 by Kerstin Neininger v12.1.0 enhancement
- CLOSED
- 1
- 2
updated Aug 29, 2018
debian package shouldn't restart depending services more than once

#77 · opened Dec 15, 2016 by Piotr Gawron v14.0.0~alpha.1 enhancement
- CLOSED
- 1
- 0
updated Aug 12, 2019
Annotations: 'Charge' field

#60 · opened Nov 22, 2016 by Marek Ostaszewski enhancement
- CLOSED
- 4
updated May 22, 2019