Issues · minerva / core · GitLab

Add 'Created by' column in the Admin panel

#927 · opened Aug 27, 2019 by Ewa Smula v14.0.0~beta.0 enhancement
- CLOSED
- 1
- 0
updated Aug 27, 2019
window Select annotators graphic amends

#952 · opened Sep 13, 2019 by Ewa Smula enhancement
- 0
updated Sep 16, 2019
Add option to choose image size in EXPORT GRAPHIC tab

#955 · opened Sep 16, 2019 by Ewa Smula v16.1.0 enhancement
- 0
updated Feb 08, 2021
Providing default zoom level setting is enough to display map

#956 · opened Sep 17, 2019 by Ewa Smula v15.0.0~alpha.0 duplicate enhancement
- CLOSED
- 1
- 1
updated Nov 15, 2019
auto notification about new release

#961 · opened Sep 18, 2019 by Piotr Gawron v15.0.0~alpha.0 enhancement
- CLOSED
- 1
- 0
updated Nov 15, 2019
Sort submaps in left panel by name

#962 · opened Sep 20, 2019 by Ewa Smula v15.0.0~alpha.0 enhancement
- CLOSED
- 1
- 0
updated May 29, 2020
default plugins

#967 · opened Sep 30, 2019 by Piotr Gawron v15.0.0~alpha.1 enhancement
- CLOSED
- 1
- 0
updated Nov 15, 2019
Auto-start of project after successful upload

#983 · opened Oct 09, 2019 by Marek Ostaszewski v15.0.0~alpha.1 enhancement
- CLOSED
- 1
- 0
updated Nov 15, 2019
export from Empty view to SBML with colours

#999 · opened Oct 24, 2019 by Ewa Smula v15.0.0~alpha.0 enhancement graphics; css; layout
- CLOSED
- 1
- 2
updated Nov 15, 2019
add support for colors in sbgn parser

#1009 · opened Nov 07, 2019 by Piotr Gawron v15.0.0~alpha.1 SBGN enhancement
- CLOSED
- 1
- 0
updated Nov 15, 2019
allow administrator to define custom CSS that overrides defaults

#1017 · opened Nov 14, 2019 by Piotr Gawron v16.1.0 enhancement
- 0
updated Feb 08, 2021
when annotation breaks postgres restriction there should be a warning instead of failure

#1027 · opened Nov 22, 2019 by Piotr Gawron v15.0.0~alpha.2 duplicate enhancement
- CLOSED
- 1
updated Dec 03, 2019
add validation of the project data

#1041 · opened Dec 02, 2019 by Piotr Gawron v15.0.0~alpha.2 enhancement
- CLOSED
- 1
- 0
updated Dec 18, 2019
COPASI does not preserve elements shape

#1055 · opened Dec 16, 2019 by Ewa Smula v16.0.0 SBML enhancement graphics; css; layout
- CLOSED
- 1
- 0
updated Feb 12, 2021
COPASI moving element without its name

#1056 · opened Dec 16, 2019 by Ewa Smula v16.0.0 SBML enhancement
- CLOSED
- 1
updated Feb 12, 2021
legend for data overlay

#1061 · opened Jan 02, 2020 by Piotr Gawron enhancement
- 0
updated Jan 02, 2020
add verification that hash matches plugin content on server side

#1074 · opened Jan 14, 2020 by Piotr Gawron v16.1.0 Rest API enhancement
- 0
updated Feb 08, 2021
allow to fetch modifier type by API

#1085 · opened Jan 23, 2020 by Piotr Gawron v16.1.0 Plugin API Rest API enhancement
- 0
updated Feb 08, 2021
allow to import/export of unit of information to SBML

#1088 · opened Jan 24, 2020 by Piotr Gawron v15.0.0~beta.4 SBGN SBML enhancement
- CLOSED
- 2
- 2
updated May 13, 2020
allow plugin to add data overlay

#1089 · opened Jan 28, 2020 by Piotr Gawron v16.1.0 Plugin API enhancement
- 7
updated Feb 08, 2021
Prevent hiding glyphs when clicking overlays?

#1102 · opened Jan 30, 2020 by Matti Hoch v16.1.0 enhancement
- 2
updated Feb 08, 2021
When removing the project, its status isn't changed 'immediately'

#1106 · opened Jan 31, 2020 by Ewa Smula v15.0.0~beta.0 enhancement
- CLOSED
- 1
- 0
updated Feb 07, 2020
adding new project format *.sbml does not change Type in Add project window

#1118 · opened Feb 07, 2020 by Ewa Smula v16.1.0 enhancement
- 1
- 0
updated Feb 08, 2021
Transcription site should have color

#1141 · opened Feb 24, 2020 by Piotr Gawron v16.1.0 enhancement
- 0
updated Feb 08, 2021
Can't access generated overlays

#1153 · opened Mar 02, 2020 by Matti Hoch v15.1.0~beta.0 Plugin API enhancement
- CLOSED
- 1
- 2
updated Jun 18, 2020
automatic layout for non-layouted sbml

#1192 · opened Mar 12, 2020 by Piotr Gawron SBML enhancement
- 0
updated Mar 12, 2020
add support for SBO annotation

#1193 · opened Mar 16, 2020 by Piotr Gawron v15.0.0~beta.2 SBML enhancement
- CLOSED
- 1
- 0
updated Mar 16, 2020
add support for uri qualifiers

#1194 · opened Mar 16, 2020 by Piotr Gawron v15.0.0~beta.2 SBML enhancement
- CLOSED
- 1
- 0
updated Mar 16, 2020
Add 'Forgotten password' to request an account

#1205 · opened Mar 25, 2020 by Ewa Smula v15.1.0~beta.0 enhancement
- CLOSED
- 1
- 0
updated Jun 19, 2020
add merge functionality to convert API

#1208 · opened Mar 31, 2020 by Piotr Gawron v15.0.0~beta.3 enhancement
- CLOSED
- 1
- 0
updated Apr 01, 2020
compartment/species aliases are considered as search results

#1229 · opened May 04, 2020 by Ewa Smula v16.1.0 enhancement
- 2
updated Feb 08, 2021
access to db.properties file

#1234 · opened May 06, 2020 by Piotr Gawron v16.1.0 enhancement
- 0
updated Feb 08, 2021
InfoTab > EXPORT > NETWORK - suggestion

#1246 · opened May 13, 2020 by Ewa Smula v16.1.0 enhancement
- 1
updated Feb 08, 2021
Chembl doesn't provide references

#31 · opened Sep 08, 2016 by Piotr Gawron enhancement
- CLOSED
- 0
updated Oct 26, 2016
Process NCBI Protein MIRIAM

#1248 · opened May 20, 2020 by Marek Ostaszewski v15.0.0~beta.4 enhancement
- CLOSED
- 1
- 1
updated May 27, 2020
Process SWISS-MODEL MIRIAM

#1249 · opened May 20, 2020 by Marek Ostaszewski v15.0.0~beta.4 enhancement
- CLOSED
- 1
- 0
updated May 27, 2020
Handle SBML render:fill in compartments

#1254 · opened May 28, 2020 by Marek Ostaszewski v15.1.0~beta.0 SBML enhancement
- CLOSED
- 1
- 0
updated Jun 22, 2020
Sort submaps by filename in the upload

#1255 · opened May 28, 2020 by Marek Ostaszewski v15.0.0~beta.4 duplicate enhancement graphics; css; layout
- CLOSED
- 1
- 1
updated May 29, 2020
name/full-name separation in SBML

#1275 · opened Jun 10, 2020 by Piotr Gawron v15.1.0~beta.0 SBML enhancement
- CLOSED
- 1
- 1
updated Aug 04, 2020
allow for automatic break of name text into few lines

#1276 · opened Jun 10, 2020 by Piotr Gawron v16.0.0 enhancement graphics; css; layout
- 1
- 0
updated Feb 08, 2021
Update SBO mappings from SBML

#1290 · opened Jun 12, 2020 by Marek Ostaszewski v15.0.0~beta.5 enhancement
- CLOSED
- 1
- 0
updated Jun 16, 2020
allow to store process coordinates

#1292 · opened Jun 15, 2020 by Piotr Gawron v15.1.0~beta.0 enhancement
- CLOSED
- 1
- 0
updated Jun 24, 2020
parse annotation information from newt extension

#1296 · opened Jun 17, 2020 by Piotr Gawron v15.1.0~beta.0 enhancement
- CLOSED
- 1
- 0
updated Jun 18, 2020
allow to remove plugin data

#1298 · opened Jun 17, 2020 by Piotr Gawron v15.1.0~beta.0 Plugin API enhancement
- CLOSED
- 1
- 0
updated Jun 24, 2020
change export as gpml of unknown reaction to line-arrow-solid

#1300 · opened Jun 18, 2020 by Ewa Smula v15.1.0~beta.0 GPML enhancement
- CLOSED
- 1
- 2
updated Jun 26, 2020
export as SBGN - change mapping of some state transition reaction

#1302 · opened Jun 18, 2020 by Ewa Smula v15.1.0~beta.0 enhancement
- CLOSED
- 1
- 0
updated Jun 25, 2020
"Show overview" coords.txt as JSON or XML

#1307 · opened Jun 19, 2020 by Marek Ostaszewski v16.1.0 enhancement
- 0
updated Feb 08, 2021
"Show overview" behaves incorrectly when unused images in "images" folder

#1308 · opened Jun 19, 2020 by Marek Ostaszewski v15.1.0~beta.0 BUG enhancement
- CLOSED
- 1
- 2
updated Jun 26, 2020
confirm login by press Enter key - nice to have

#1312 · opened Jun 24, 2020 by Ewa Smula v15.1.0~beta.0 enhancement
- CLOSED
- 1
- 0
updated Jun 26, 2020
Make text area glyphs with z-index < 0 non-clickable

#1314 · opened Jun 25, 2020 by Marek Ostaszewski v15.1.0~beta.0 enhancement
- CLOSED
- 1
- 0
updated Jun 26, 2020
gpml OVAL not imported

#1322 · opened Jun 30, 2020 by Ewa Smula GPML enhancement
- CLOSED
- 2
updated Jul 14, 2020
add instance name to 'request an account' email's title

#1330 · opened Jul 03, 2020 by Ewa Smula v15.1.0~beta.1 enhancement
- CLOSED
- 1
- 2
updated Aug 14, 2020
Handling of Text Areas and Graphical Elements

#1335 · opened Jul 14, 2020 by Marek Ostaszewski v16.1.0 enhancement
- 0
updated Feb 08, 2021
process textGlyph that is not connected to species

#1353 · opened Aug 14, 2020 by Piotr Gawron v16.1.0 SBML enhancement
- 0
updated Feb 08, 2021
reaction name is not visible

#1355 · opened Aug 14, 2020 by Piotr Gawron v16.1.0 enhancement
- 0
updated Feb 08, 2021
SBGN view: unit of information is shown twice for a multimer

#1358 · opened Aug 17, 2020 by Alexander MAZEIN v16.0.0 enhancement
- 9
updated Feb 08, 2021
Perfect search via URL

#1376 · opened Sep 14, 2020 by Marek Ostaszewski v16.0.0 enhancement
- CLOSED
- 1
- 0
updated Feb 09, 2021
hypothetical complex information should be accessible via API

#1379 · opened Sep 22, 2020 by Marek Ostaszewski v15.1.0 CellDesigner Rest API enhancement
- CLOSED
- 0
updated Oct 22, 2020
add check for available HDD space when uploading map/file to prevent running out of space

#1389 · opened Oct 08, 2020 by Piotr Gawron v16.1.0 enhancement
- 0
updated Feb 08, 2021
handle additional miriam

#1420 · opened Nov 18, 2020 by Piotr Gawron v16.0.0 enhancement
- CLOSED
- 1
updated Feb 09, 2021
remove Default checkboxes in project Edit - > Overlays

#1427 · opened Nov 24, 2020 by Ewa Smula v16.1.0 enhancement graphics; css; layout
- 0
updated Feb 08, 2021
Handle MIRIAM PMC

#1450 · opened Feb 02, 2021 by Marek Ostaszewski v16.0.0 enhancement
- CLOSED
- 1
- 0
updated Feb 09, 2021
Group search results by diagram

#1451 · opened Feb 05, 2021 by Marek Ostaszewski v16.0.0 enhancement graphics; css; layout
- 0
updated Feb 05, 2021
SBML layout/render should contain information about modification states

#1456 · opened Feb 10, 2021 by Piotr Gawron v16.0.0 SBML enhancement
- 1
- 0
updated Feb 12, 2021
generate process rectangles for SBML render layout

#1457 · opened Feb 10, 2021 by Piotr Gawron v16.0.0 SBML enhancement
- 0
updated Feb 10, 2021
searching for elements in submap

#86 · opened Mar 31, 2017 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 2
- 0
updated Mar 16, 2018
search and overlays for submaps

#85 · opened Mar 31, 2017 by Piotr Gawron duplicate enhancement
- CLOSED
- 1
updated Feb 22, 2018
Multicolored anchors

#80 · opened Jan 30, 2017 by Marek Ostaszewski v12.1.0 enhancement
- CLOSED
- 1
- 1
updated Jul 20, 2018
Zoom via link parameters

#79 · opened Jan 30, 2017 by Marek Ostaszewski v12.0.0 enhancement
- CLOSED
- 1
- 1
updated Dec 05, 2017
Overlays: user data upload

#69 · opened Nov 22, 2016 by Marek Ostaszewski v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Dec 05, 2017
Overlays: color scale

#68 · opened Nov 22, 2016 by Marek Ostaszewski v12.0.0 enhancement
- CLOSED
- 1
- 1
updated Dec 05, 2017
Chemical target interface: 'no disease' text

#64 · opened Nov 22, 2016 by Marek Ostaszewski v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 14, 2018
allow user to upload map with custom hierarchical view

#54 · opened Nov 16, 2016 by Piotr Gawron duplicate enhancement
- CLOSED
- 1
updated Jul 19, 2018
visualization of two overlaying drugs

#39 · opened Sep 20, 2016 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 1
updated Mar 06, 2019
search results should be merged

#36 · opened Sep 08, 2016 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 10
updated Feb 20, 2019
Autocomplete for drugs, chemicals, mirnas

#27 · opened Sep 08, 2016 by Piotr Gawron v12.0.0 enhancement
- CLOSED
- 1
- 0
updated Jan 09, 2018
Visualization of text mining.

#24 · opened Sep 08, 2016 by Piotr Gawron enhancement won't fix
- CLOSED
- 1
updated Aug 06, 2018
Create possibility to overlay data by alias identifier.

#21 · opened Sep 08, 2016 by Piotr Gawron duplicate enhancement
- CLOSED
- 1
updated Feb 22, 2018
RnaXmlParser doesn't support export of rna regions

#19 · opened Sep 08, 2016 by Piotr Gawron enhancement refactor
- CLOSED
- 1
- 0
updated Jul 13, 2018
Network export mprovements

#13 · opened Sep 08, 2016 by Piotr Gawron enhancement
- CLOSED
- 1
updated Feb 17, 2018
API

#11 · opened Sep 08, 2016 by Piotr Gawron v11.0.0 enhancement
- CLOSED
- 0
updated Jul 10, 2017
upgrade Primefaces

#6 · opened Sep 08, 2016 by Piotr Gawron enhancement
- CLOSED
- 1
updated Jun 22, 2017

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