export to CD (might be race condition)
2022-06-27 10:39:51,945 ERROR [http-nio-8080-exec-8] (BaseController.java:92) - lcsb.mapviewer.model.map.InconsistentModelException: [StateTransitionReaction n12] Problem with exporting reaction
lcsb.mapviewer.model.map.InconsistentModelException: [StateTransitionReaction n12] Problem with exporting reaction
at lcsb.mapviewer.converter.model.celldesigner.reaction.ReactionCollectionXmlParser.reactionCollectionToXmlString(ReactionCollectionXmlParser.java:126) ~[converter-CellDesigner-16.2.3.jar:?]
at lcsb.mapviewer.converter.model.celldesigner.CellDesignerXmlParser.model2Xml(CellDesignerXmlParser.java:677) ~[converter-CellDesigner-16.2.3.jar:?]
at lcsb.mapviewer.converter.model.celldesigner.CellDesignerXmlParser.model2String(CellDesignerXmlParser.java:262) ~[converter-CellDesigner-16.2.3.jar:?]
at lcsb.mapviewer.converter.Converter.model2InputStream(Converter.java:79) ~[converter-16.2.3.jar:?]
at lcsb.mapviewer.api.projects.models.ModelController.getModelAsModelFile(ModelController.java:441) ~[rest-api-16.2.3.jar:?]
at lcsb.mapviewer.api.projects.models.ModelController.getModelAsModelFile(ModelController.java:378) ~[rest-api-16.2.3.jar:?]
at lcsb.mapviewer.api.projects.models.ModelController$$FastClassBySpringCGLIB$$3e1e72b9.invoke(<generated>) ~[rest-api-16.2.3.jar:?]
at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:204) ~[spring-core-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(CglibAopProxy.java:746) ~[spring-aop-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:163) ~[spring-aop-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.validation.beanvalidation.MethodValidationInterceptor.invoke(MethodValidationInterceptor.java:112) ~[spring-context-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:185) ~[spring-aop-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.security.access.intercept.aopalliance.MethodSecurityInterceptor.invoke(MethodSecurityInterceptor.java:69) ~[spring-security-core-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:185) ~[spring-aop-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept(CglibAopProxy.java:688) ~[spring-aop-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at lcsb.mapviewer.api.projects.models.ModelController$$EnhancerBySpringCGLIB$$f80563f3.getModelAsModelFile(<generated>) ~[rest-api-16.2.3.jar:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_201]
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[?:1.8.0_201]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[?:1.8.0_201]
at java.lang.reflect.Method.invoke(Method.java:498) ~[?:1.8.0_201]
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:209) ~[spring-web-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:136) ~[spring-web-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:102) ~[spring-webmvc-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:891) ~[spring-webmvc-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:797) ~[spring-webmvc-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:87) ~[spring-webmvc-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:991) [spring-webmvc-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:925) [spring-webmvc-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:974) [spring-webmvc-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:866) [spring-webmvc-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:622) [tomcat8-servlet-api-8.0.32.jar:?]
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:851) [spring-webmvc-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) [tomcat8-servlet-api-8.0.32.jar:?]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:292) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207) [tomcat8-catalina-8.0.32.jar:8.0.32]
at lcsb.mapviewer.web.bean.utils.XFrameFilter.doFilter(XFrameFilter.java:42) [classes/:?]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) [tomcat8-websocket-8.0.32.jar:8.0.32]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:320) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:127) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:91) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:119) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:111) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at lcsb.mapviewer.web.bean.utils.CORSFilter.doFilter(CORSFilter.java:48) [classes/:?]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at lcsb.mapviewer.web.bean.utils.CacheFilter.doFilter(CacheFilter.java:43) [classes/:?]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at lcsb.mapviewer.web.bean.utils.XFrameFilter.doFilter(XFrameFilter.java:42) [classes/:?]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.session.ConcurrentSessionFilter.doFilter(ConcurrentSessionFilter.java:155) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:200) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) [spring-web-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:215) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:178) [spring-security-web-5.0.8.RELEASE.jar:5.0.8.RELEASE]
at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:357) [spring-web-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:270) [spring-web-5.0.9.RELEASE.jar:5.0.9.RELEASE]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:494) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:141) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:522) [tomcat8-catalina-8.0.32.jar:8.0.32]
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1095) [tomcat8-coyote-8.0.32.jar:8.0.32]
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:672) [tomcat8-coyote-8.0.32.jar:8.0.32]
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1520) [tomcat8-coyote-8.0.32.jar:8.0.32]
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1476) [tomcat8-coyote-8.0.32.jar:8.0.32]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [?:1.8.0_201]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [?:1.8.0_201]
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) [tomcat8-util-8.0.32.jar:8.0.32]
at java.lang.Thread.run(Thread.java:748) [?:1.8.0_201]
Caused by: lcsb.mapviewer.common.exception.InvalidArgumentException: Unknown reaction type: class lcsb.mapviewer.model.map.reaction.type.StateTransitionReaction
at lcsb.mapviewer.converter.model.celldesigner.reaction.ReactionToXml.getCellDesignerReactionTypeString(ReactionToXml.java:561) ~[converter-CellDesigner-16.2.3.jar:?]
at lcsb.mapviewer.converter.model.celldesigner.reaction.ReactionToXml.getAnnotationXmlStringForReaction(ReactionToXml.java:500) ~[converter-CellDesigner-16.2.3.jar:?]
at lcsb.mapviewer.converter.model.celldesigner.reaction.ReactionToXml.toXml(ReactionToXml.java:143) ~[converter-CellDesigner-16.2.3.jar:?]
at lcsb.mapviewer.converter.model.celldesigner.reaction.ReactionXmlParser.toXml(ReactionXmlParser.java:71) ~[converter-CellDesigner-16.2.3.jar:?]
at lcsb.mapviewer.converter.model.celldesigner.reaction.ReactionCollectionXmlParser.reactionCollectionToXmlString(ReactionCollectionXmlParser.java:123) ~[converter-CellDesigner-16.2.3.jar:?]
... 96 more