Biohackathon Wikipathway issues
-
parsing of wikipathway path WP706 doesn't work -
another pathway that doesn't work: WP2911 -
move model doesn't change coordinates of center line, modifications, species state box -
layouting elements doesn't provide z-index -
auto layouting dimension size should depend on number of elements not number of reactions -
auto layouot should connect to the border not center of the element -
gpml parser issues: - database mappings:
-
ChEMBL compound
- WP4189 -
ChemIDplus
- WP2235 -
COMPOUND
- WP2997 -
EcoGene
- WP3850 -
Ensembl Mosquito
- WP1231 -
Entrez
- WP1135 -
EMBL
- WP3869 -
FlyBase
- WP97 -
GeneDB
- WP2593 -
Gramene Arabidopsis
- WP626 -
Gramene Rice
- WP4364 -
IntAct
- WP2869 -
KEGG Drug
- WP4585 -
KNApSAcK
- WP4597 -
LIPID MAPS
- WP4726 -
NanoParticle Ontology
- WP2509 -
NCBI Protein
- WP4701 -
MaizeGDB
- WP3102 -
OMIM
- WP4161 -
Other
- WP566 -
pato
- WP3635 -
PubChem
- WP2582 -
PubChem Compound
- WP2994 -
RGD
- WP3887 -
RiceCyc
- WP3058 -
Rice Ensembl Gene
- WP617 -
SPIKE
- WP4016 -
TTD Drug
- WP4487 -
TubercuList
- WP2102 -
XMetDB
- WP3633 -
ZFIN
- WP4021
-
- problematic shape type:
-
mim-phosphorylated
- WP914 -
Pentagon
- WP2848 -
None
- WP2037
-
- Unknown gpml interaction type:
-
ReceptorRound
- WP402 -
mim-translocation
- WP2032
-
- unknown state type:
-
^
- WP4674 -
+
- WP4263 -
C
- WP4324 -
C risk allele
- WP3407 -
ct: coding
- WP2804 -
DeP
- WP3236 -
Gg
- WP3124 -
K9ac
- WP3123 -
L
- WP3226 -
M
- WP4538 -
O
- WP4357 -
PC
- WP231 -
P1
- WP4651 -
PolyUb
- WP3830 -
pT308
- WP3915 -
R
- WP4705 -
S10
- WP4659 -
S226
- WP3191 -
S308
- WP4747 -
Sumo
- WP4239 -
T172
- WP3265 -
T183
- WP3277 -
T202
- WP3888 -
TPP
- WP4686 -
Tyr-P
- WP3252 -
U
- WP413 -
Y204
- WP3141
-
- Unknown value of "style" attribute
-
Pathway
- WP4685
-
- other
-
lcsb.mapviewer.common.geometry.LineTransformation.distBetweenPointAndLineSegment(LineTransformation.java:141)
WP4577
-
- database mappings: