core issueshttps://git-r3lab.uni.lu/minerva/core/-/issues2024-03-05T12:52:08+01:00https://git-r3lab.uni.lu/minerva/core/-/issues/1971Admin panel: change look/feel of archiving buttons2024-03-05T12:52:08+01:00Marek OstaszewskiAdmin panel: change look/feel of archiving buttonsArchive/Revive button should be in the Edit panel, to avoid changes in the admin panel layout.
It can be placed either in the "General" tab, or in a separate tab "Archive/Revive".Archive/Revive button should be in the Edit panel, to avoid changes in the admin panel layout.
It can be placed either in the "General" tab, or in a separate tab "Archive/Revive".17.0.0-beta.4https://git-r3lab.uni.lu/minerva/core/-/issues/1895Nonintuitive ordering of data overlay boxes over an element2023-09-21T13:55:25+02:00Marek OstaszewskiNonintuitive ordering of data overlay boxes over an elementWhen selecting multiple overlays, the order in which they are displayed over an element (left to right) is nonintuitive.
In the image, bands for "HLA-B" come from:
1. 1st general overlay (DEGs non-lesional...)
2. 1st user overlay (cads.....When selecting multiple overlays, the order in which they are displayed over an element (left to right) is nonintuitive.
In the image, bands for "HLA-B" come from:
1. 1st general overlay (DEGs non-lesional...)
2. 1st user overlay (cads...)
3. 2nd general overlay (DEGs lesional...)
Expected behaviour should either be:
- display boxes in the order they were selected
- display boxes such that they always follow the order (left to right) in the left panel, general overlays first
![Screenshot_2023-09-13_at_09.19.04](/uploads/54c0864a2f8ff603174cad079cb46c10/Screenshot_2023-09-13_at_09.19.04.png)v16.2.13https://git-r3lab.uni.lu/minerva/core/-/issues/1853allow to login to DAPI by press key Enter2023-11-15T07:44:23+01:00Ewa Smulaallow to login to DAPI by press key EnterAdd possibility to confirm log in DAPI by pressing Enter, as currently user needs to click on LOGIN button.Add possibility to confirm log in DAPI by pressing Enter, as currently user needs to click on LOGIN button.v16.3.0~beta.0Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1839Could we add 'loading' icon in EXPORT tab ?2023-11-15T11:45:40+01:00Ewa SmulaCould we add 'loading' icon in EXPORT tab ?For maps with a lot of pathways/compartments there is few seconds delay to display _Included/Excluded compartment/pathways_ lists and _Download_ button. Maybe we could add there loading icon? So user knows the page is not ready yet?For maps with a lot of pathways/compartments there is few seconds delay to display _Included/Excluded compartment/pathways_ lists and _Download_ button. Maybe we could add there loading icon? So user knows the page is not ready yet?v16.3.0~beta.0Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1703remove 'undefined submaps' from SUBMAPS tab2022-09-07T09:08:05+02:00Ewa Smularemove 'undefined submaps' from SUBMAPS tab![Screenshot_2022-06-07_at_15.13.07](/uploads/b169cfb48845bfd569747286d96acbd3/Screenshot_2022-06-07_at_15.13.07.png)![Screenshot_2022-06-07_at_15.13.07](/uploads/b169cfb48845bfd569747286d96acbd3/Screenshot_2022-06-07_at_15.13.07.png)v16.2.8Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1678change checkbox to radio button for default backgrounds2024-02-27T11:00:53+01:00Ewa Smulachange checkbox to radio button for default backgroundsAs currently user can tick few __default__ views, change checkbox on radio button (and the default view set Pathways&compartments).
![Screenshot_2022-03-21_at_16.36.56](/uploads/914702fe66d7c6b1bf3d90a25f532412/Screenshot_2022-03-21_...As currently user can tick few __default__ views, change checkbox on radio button (and the default view set Pathways&compartments).
![Screenshot_2022-03-21_at_16.36.56](/uploads/914702fe66d7c6b1bf3d90a25f532412/Screenshot_2022-03-21_at_16.36.56.png)v17.1.0https://git-r3lab.uni.lu/minerva/core/-/issues/1662Expand/Collapse search results icon - change2024-01-09T14:46:25+01:00Marek OstaszewskiExpand/Collapse search results icon - changeThe icon to expand/collapse search results should be changed for the eye opened/closed to triangle down/up (Arrow Drop Down/Up in Google Material Design icons).The icon to expand/collapse search results should be changed for the eye opened/closed to triangle down/up (Arrow Drop Down/Up in Google Material Design icons).v17.1.0https://git-r3lab.uni.lu/minerva/core/-/issues/1654Patch overlay documentiation contains not-existing parameters2022-03-01T08:46:29+01:00Piotr GawronPatch overlay documentiation contains not-existing parametersv16.0.8https://git-r3lab.uni.lu/minerva/core/-/issues/1571Associated submap: button in missing in left panel2021-11-08T15:37:32+01:00Ewa SmulaAssociated submap: button in missing in left panel__Associated submap:__ button in missing in left panel after clicking on anchor point on the map.
![Screenshot_2021-10-27_at_12.06.23](/uploads/84eb2b08ce40c693b3f53b67900b6430/Screenshot_2021-10-27_at_12.06.23.png)__Associated submap:__ button in missing in left panel after clicking on anchor point on the map.
![Screenshot_2021-10-27_at_12.06.23](/uploads/84eb2b08ce40c693b3f53b67900b6430/Screenshot_2021-10-27_at_12.06.23.png)v16.0.1Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1555typo in `Click to hide all drugs for ths element`2021-09-27T09:24:15+02:00Ewa Smulatypo in `Click to hide all drugs for ths element`![Screenshot_2021-09-22_at_10.38.41](/uploads/54038b96eb32b28cd2f24e2127e5c228/Screenshot_2021-09-22_at_10.38.41.png)![Screenshot_2021-09-22_at_10.38.41](/uploads/54038b96eb32b28cd2f24e2127e5c228/Screenshot_2021-09-22_at_10.38.41.png)v16.0.0~beta.3Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1541clear button display warning about chemical search2021-09-07T13:52:55+02:00Ewa Smulaclear button display warning about chemical searchIf the project doesn't have disease ID, after click `CLEAR` the dialog is displayed: `Cannot search for chemicals in a project without defined disease.` Only with first click on `CLEAR`. Then each time after opening this project from Adm...If the project doesn't have disease ID, after click `CLEAR` the dialog is displayed: `Cannot search for chemicals in a project without defined disease.` Only with first click on `CLEAR`. Then each time after opening this project from Admin Panel this dialog is displayed.v16.0.0~beta.2Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1532change the OVERLAYS tab tables2021-09-07T13:02:25+02:00Ewa Smulachange the OVERLAYS tab tablesPlease make the current overlays table display like below:
- backgrounds in one table,
- in case if user will add public overlay, display it in second table PUBLIC OVERLAYS,
- and user-provided overlays in the third one.
![Screen_S...Please make the current overlays table display like below:
- backgrounds in one table,
- in case if user will add public overlay, display it in second table PUBLIC OVERLAYS,
- and user-provided overlays in the third one.
![Screen_Shot_2021-08-23_at_13.10.50](/uploads/134b61ad94bf86996e351f3f28528b2b/Screen_Shot_2021-08-23_at_13.10.50.png)v16.0.0~beta.2Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1515separate backgrounds and overlays in admin panel2021-06-16T14:58:29+02:00Piotr Gawronseparate backgrounds and overlays in admin panelv16.0.0~beta.1https://git-r3lab.uni.lu/minerva/core/-/issues/1505new display of search tab in left panel2021-09-09T14:45:16+02:00Ewa Smulanew display of search tab in left panelChange the display of the search tab results in the left panel as per below image.
There will be default 1st tab with text: `"See results of your query in separate tabs. The query results summary:" + the list of search results. ` ...Change the display of the search tab results in the left panel as per below image.
There will be default 1st tab with text: `"See results of your query in separate tabs. The query results summary:" + the list of search results. `
@marek.ostaszewski we agreed to remove the `eye button`, which hides/unhides the results, right? as with new display the `eye` is not necessary?
---
three vertical dots icon for the 1st tab - `https://fonts.google.com/icons?selected=Material%20Icons%3Amore_vert`
```
<span class="material-icons">
more_vert
</span>
```
---
![-new-search-tab-minerva](/uploads/b09f752765dbca8348503354876237d6/-new-search-tab-minerva.png)v16.0.0~beta.2Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1493DIsplay of pin popup window2021-09-09T14:45:21+02:00Ewa SmulaDIsplay of pin popup windowrelated to #1366.
New display of popup after clicking of the pin in the map.
![Screen_Shot_2021-05-19_at_16.15.07](/uploads/1ef43309967ae8552389c6db739cc137/Screen_Shot_2021-05-19_at_16.15.07.png)
current display:
![Screen_...related to #1366.
New display of popup after clicking of the pin in the map.
![Screen_Shot_2021-05-19_at_16.15.07](/uploads/1ef43309967ae8552389c6db739cc137/Screen_Shot_2021-05-19_at_16.15.07.png)
current display:
![Screen_Shot_2021-05-19_at_15.56.04](/uploads/81cbde78771c4626dbe3d54a50eaeb81/Screen_Shot_2021-05-19_at_15.56.04.png)v16.0.0~beta.2Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1491Change active tab when choosing a "Show all" element from pin popup2021-06-22T10:29:07+02:00Ewa SmulaChange active tab when choosing a "Show all" element from pin popuprelated to issue #1365 - fixed.
Please add one more thing: if user is in different tab than SEARCH, and click on a (drug/chem/mirna) target in pin popup, redirect the left panel to corresponding SEARCH > drugs/chemical/mirna.related to issue #1365 - fixed.
Please add one more thing: if user is in different tab than SEARCH, and click on a (drug/chem/mirna) target in pin popup, redirect the left panel to corresponding SEARCH > drugs/chemical/mirna.v16.0.0~beta.1Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1458Glyphs are displayed in a suboptimal resolution2021-04-19T11:36:39+02:00Marek OstaszewskiGlyphs are displayed in a suboptimal resolutionWhen glyphs are provided for elements, their resolution is suboptimal, see attached screenshot and the MINERVA build file.
![Screenshot_2021-02-11_at_10.22.47](/uploads/955db00561116d37a373201a630a7946/Screenshot_2021-02-11_at_10.22.47....When glyphs are provided for elements, their resolution is suboptimal, see attached screenshot and the MINERVA build file.
![Screenshot_2021-02-11_at_10.22.47](/uploads/955db00561116d37a373201a630a7946/Screenshot_2021-02-11_at_10.22.47.png)
[Archive.zip](/uploads/3125fd41cf9b10d0e61ffa3222f7772f/Archive.zip)v16.0.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/issues/1455Reactions overlap structural modification bubbles2021-09-20T09:29:41+02:00Marek OstaszewskiReactions overlap structural modification bubblesReactions are drawn over the structural modification bubbles, masking their content
![Screenshot_2021-02-09_at_12.36.06](/uploads/4e5a997d68400d5436434c6daeaa9752/Screenshot_2021-02-09_at_12.36.06.png)Reactions are drawn over the structural modification bubbles, masking their content
![Screenshot_2021-02-09_at_12.36.06](/uploads/4e5a997d68400d5436434c6daeaa9752/Screenshot_2021-02-09_at_12.36.06.png)v16.1.0~beta.0https://git-r3lab.uni.lu/minerva/core/-/issues/1454Orthogonal reactions drawn wrongly when linking to phenotypes and drugs2021-04-30T18:22:50+02:00Marek OstaszewskiOrthogonal reactions drawn wrongly when linking to phenotypes and drugsSee examples
![Screenshot_2021-02-09_at_12.19.15](/uploads/3e2c12667573a9c80ed88f0e01c3f6c4/Screenshot_2021-02-09_at_12.19.15.png)
![Screenshot_2021-02-09_at_12.19.58](/uploads/441318c0af6c38a4f3e78640957c59aa/Screenshot_2021-02-09_at_...See examples
![Screenshot_2021-02-09_at_12.19.15](/uploads/3e2c12667573a9c80ed88f0e01c3f6c4/Screenshot_2021-02-09_at_12.19.15.png)
![Screenshot_2021-02-09_at_12.19.58](/uploads/441318c0af6c38a4f3e78640957c59aa/Screenshot_2021-02-09_at_12.19.58.png)v15.1.4https://git-r3lab.uni.lu/minerva/core/-/issues/1451Group search results by diagram2021-04-26T15:00:52+02:00Marek OstaszewskiGroup search results by diagramWith the submaps becoming more and more used, search functionality can be improved not to overload the left panel, and help to browse the results.
In the left panel, if a project has submaps, search results can be grouped by submap, w...With the submaps becoming more and more used, search functionality can be improved not to overload the left panel, and help to browse the results.
In the left panel, if a project has submaps, search results can be grouped by submap, with an overall number of hits per a collapsed "group item". The "group item" should be expandable. The link to a submap should be available only in the "group item", in both collapsed and expanded form.
@piotr.gawron @ewa.smula your comments?v16.0.0~beta.0