core issueshttps://git-r3lab.uni.lu/minerva/core/-/issues2017-06-20T15:11:31+02:00https://git-r3lab.uni.lu/minerva/core/-/issues/125Project tab2017-06-20T15:11:31+02:00Piotr GawronProject tab* Change name to INFO
* add user profile tab taba
* add link to export
* add link to manual* Change name to INFO
* add user profile tab taba
* add link to export
* add link to manualhttps://git-r3lab.uni.lu/minerva/core/-/issues/124Login2017-06-22T11:37:36+02:00Piotr GawronLoginTab should be removed,
When login is required popup window should be providedTab should be removed,
When login is required popup window should be providedhttps://git-r3lab.uni.lu/minerva/core/-/issues/123Search tab2017-07-10T11:20:48+02:00Piotr GawronSearch tabSearch should be composed of 4 different subtabs:
* generic search
* drug search
* chemical search
* mirna searchSearch should be composed of 4 different subtabs:
* generic search
* drug search
* chemical search
* mirna searchv11.0.0https://git-r3lab.uni.lu/minerva/core/-/issues/122JS API control over sufraces2017-06-16T09:38:19+02:00Piotr GawronJS API control over sufracesadd possibility to pass:
* line width
* line color (for surface over elements)add possibility to pass:
* line width
* line color (for surface over elements)https://git-r3lab.uni.lu/minerva/core/-/issues/118when highligting element that doesn't exist throw an error2017-06-22T17:12:38+02:00Piotr Gawronwhen highligting element that doesn't exist throw an errorv11.0.0https://git-r3lab.uni.lu/minerva/core/-/issues/112new JS API calls2017-06-09T17:46:40+02:00Piotr Gawronnew JS API calls* there should be info about all element types
* set color of surface for highlighting
* get bioentities should allow passing arrays
* get reaction by participant should allow passing arrays
* fitBounds for the coordinates should be ...* there should be info about all element types
* set color of surface for highlighting
* get bioentities should allow passing arrays
* get reaction by participant should allow passing arrays
* fitBounds for the coordinates should be available via JS call
* set opacity of surface for highlightinghttps://git-r3lab.uni.lu/minerva/core/-/issues/106Improve error reporting2017-06-12T17:01:56+02:00Piotr GawronImprove error reportingCreate popup with nice message about errors.Create popup with nice message about errors.https://git-r3lab.uni.lu/minerva/core/-/issues/105gzip emails if there are too big2018-01-26T16:59:25+01:00Piotr Gawrongzip emails if there are too bigWhen sending email, gzip content if it exceeds 32kb.When sending email, gzip content if it exceeds 32kb.v12.0.0https://git-r3lab.uni.lu/minerva/core/-/issues/103repositioning data overlays2018-03-14T11:47:19+01:00Piotr Gawronrepositioning data overlaysOrder of the data overlays to be presented should be modifiable.
This order should be saved on demand as a custom user order.
There should be a way to sort alphabetically the order.
It shouldn't affect public data overlays.Order of the data overlays to be presented should be modifiable.
This order should be saved on demand as a custom user order.
There should be a way to sort alphabetically the order.
It shouldn't affect public data overlays.v12.0.0https://git-r3lab.uni.lu/minerva/core/-/issues/102data overlays grouping2018-07-19T21:53:48+02:00Piotr Gawrondata overlays groupingthere should be possibility to group data overlays (hierarchical tree structure)there should be possibility to group data overlays (hierarchical tree structure)https://git-r3lab.uni.lu/minerva/core/-/issues/99info about loading data from server2017-05-29T17:35:53+02:00Piotr Gawroninfo about loading data from serverThis info should be visible during two stages:
* when loading project the global div info should be in "loading state"
* when app is working and we are loading some data from server show info in right bottom corner (with on mouse over in...This info should be visible during two stages:
* when loading project the global div info should be in "loading state"
* when app is working and we are loading some data from server show info in right bottom corner (with on mouse over info about what is loading)Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/98resource link version should inlclude git commit version2017-06-12T17:01:31+02:00Piotr Gawronresource link version should inlclude git commit versionRight now url uses minerva version to force reload new version of the file, it should use git version, so developer wouldn't be forced to force reload in a browser with everyt new commit.Right now url uses minerva version to force reload new version of the file, it should use git version, so developer wouldn't be forced to force reload in a browser with everyt new commit.Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/97data upload2017-06-30T16:10:27+02:00Piotr Gawrondata uploadallow users to upload data with just names (withou values or colors assigned). In such case default max color value should be used to visualize elements.allow users to upload data with just names (withou values or colors assigned). In such case default max color value should be used to visualize elements.v11.0.0https://git-r3lab.uni.lu/minerva/core/-/issues/96search by chemical names2018-01-17T16:20:02+01:00Piotr Gawronsearch by chemical namessearch by chemicals should allow to search by synonyms (not only names used by ctd)search by chemicals should allow to search by synonyms (not only names used by ctd)v12.0.0https://git-r3lab.uni.lu/minerva/core/-/issues/95upload of sbml2018-02-16T14:08:36+01:00Piotr Gawronupload of sbmlSBML has an extension for layout description, and it would be good to have SBML upload capability. Also, species’ and reactions’ quantities should be parsed upon upload, and represented visually.
Some comments from Nicolas Le Novere:
>...SBML has an extension for layout description, and it would be good to have SBML upload capability. Also, species’ and reactions’ quantities should be parsed upon upload, and represented visually.
Some comments from Nicolas Le Novere:
>I believe SBML Layout is now supported by both SBML APIs:
>
>LibSBML (in C++, but with bindings to Java)
>http://sbml.org/Software/libSBML
>
>JSBML (native Java)
>http://sbml.org/Software/JSBML
>
>Re: parsing, with the APIs above, you have access of the whole content of SBML files. You can thereafter use the elements or not. My main advice would be to support SBML as the core language, using the community APIs augmented by the layer processing the CellDesigner annotations.
>
> ...
>
> More information about the SBML Layout package can be found at: http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/layout
related issue: #232 v12.0.0https://git-r3lab.uni.lu/minerva/core/-/issues/94left panel2017-06-15T12:19:19+02:00Piotr Gawronleft paneltabs in left panel should be reorganizedtabs in left panel should be reorganizedhttps://git-r3lab.uni.lu/minerva/core/-/issues/91missing methods for JS app API2017-05-31T12:29:26+02:00Piotr Gawronmissing methods for JS app API* get reactions for element
* get element by id
* (de)highlight elements. As an icon or dataoverlay.
* set zoom level and center map* get reactions for element
* get element by id
* (de)highlight elements. As an icon or dataoverlay.
* set zoom level and center maphttps://git-r3lab.uni.lu/minerva/core/-/issues/90Rest API should follow google guidlines2017-06-09T12:13:22+02:00Piotr GawronRest API should follow google guidlineshttps://cloud.google.com/apis/design/https://cloud.google.com/apis/design/https://git-r3lab.uni.lu/minerva/core/-/issues/88add description of the fields `Project Disease` and `Organism`2017-07-10T11:20:48+02:00Piotr Gawronadd description of the fields `Project Disease` and `Organism`v11.0.0https://git-r3lab.uni.lu/minerva/core/-/issues/86searching for elements in submap2018-03-16T13:34:26+01:00Piotr Gawronsearching for elements in submapShould also give link in the top map where it's linked to submap.Should also give link in the top map where it's linked to submap.v12.0.0