Commits · devel_15.1.x · minerva / core

13 Dec, 2021 2 commits
- Merge branch 'log4j2-security-issue-15.1' into 'devel_15.1.x' · cbf0fb84
  Piotr Gawron authored Dec 13, 2021
```
security fix in log4j2 zero day exploit https://www.lunasec.io/docs/blog/log4j-zero-day/

See merge request !1399
```
  cbf0fb84
- security fix in log4j2 zero day exploit https://www.lunasec.io/docs/blog/log4j-zero-day/ · bb7456f6
  Piotr Gawron authored Dec 13, 2021
  
  bb7456f6
03 Nov, 2021 2 commits
- Merge branch 'piotr.gawron-devel_15.1.x-patch-24810' into 'devel_15.1.x' · 2639e7f7
  Piotr Gawron authored Nov 03, 2021
```
use https repositories

See merge request !1373
```
  2639e7f7
- use https repositories · 24106bae
  Piotr Gawron authored Nov 03, 2021
  
  24106bae
28 Oct, 2021 4 commits
- Merge branch '1570-sbml-issue' into 'devel_15.1.x' · 9b326535
  Piotr Gawron authored Oct 28, 2021
```
Resolve "SBML generation problem for WP5113"

See merge request !1368
```
  9b326535
- Merge branch '1569-gpml-issue' into 'devel_15.1.x' · c0f936bf
  Piotr Gawron authored Oct 28, 2021
```
duplicate id in biopax nodes should be handled as warnings

See merge request !1367
```
  c0f936bf
- reaction to complex name should prevent removing complex name as species · 14278669
  Piotr Gawron authored Oct 28, 2021
  
  14278669
- sbml is up again · 0e5dafff
  Piotr Gawron authored Oct 28, 2021
  
  0e5dafff
27 Oct, 2021 4 commits
- duplicate id in biopax nodes should be handled as warnings · 11e4ce20
  Piotr Gawron authored Oct 27, 2021
  
  11e4ce20
- Merge branch '1568-encoding-issue' into 'devel_15.1.x' · 0f2d82cc
  Piotr Gawron authored Oct 27, 2021
```
Resolve "character encoding issue with SBML for WP5039"

See merge request !1366
```
  0f2d82cc
- ignore sbml validation for now (sbml.org is down) · 7f3fcfe9
  Piotr Gawron authored Oct 27, 2021
  
  7f3fcfe9
- don't convert response to UTF-8 String (send bytes directly) · ef6000eb
  Piotr Gawron authored Oct 27, 2021
  
  ef6000eb
26 Oct, 2021 2 commits
- Merge branch '1565-failed-to-fetch' into 'devel_15.1.x' · 3ed9b77b
  Piotr Gawron authored Oct 26, 2021
```
Resolve "MINERVANET - Error Report 333"

See merge request !1364
```
  3ed9b77b
- handle properly failed to fetch errors · f8b30ee5
  Piotr Gawron authored Oct 26, 2021
  
  f8b30ee5
12 Oct, 2021 4 commits
- Merge branch 'ucsc-issues' into 'devel_15.1.x' · bde7b610
  Piotr Gawron authored Oct 12, 2021
```
Ucsc issues

See merge request !1362
```
  bde7b610
- use europe mirror for UCSC files · f062dd04
  Piotr Gawron authored Oct 12, 2021
  
  f062dd04
- changelog updated · 24647eee
  Piotr Gawron authored Oct 12, 2021
  
  24647eee
- passive mode is disabled on ucsc ftp · e6ecf761
  Piotr Gawron authored Oct 12, 2021
  
  e6ecf761
07 Oct, 2021 5 commits
- Merge branch 'node-issue' into 'devel_15.1.x' · 20f39958
  Piotr Gawron authored Oct 07, 2021
```
nodejs 9 is not supported anymore

See merge request !1359
```
  20f39958
- vmh started returning 500 Internal Server Error for our test query · 4115740b
  Piotr Gawron authored Oct 07, 2021
  
  4115740b
- ignore certificate isses in apt-get · 24eaaa4e
  Piotr Gawron authored Oct 07, 2021
  
  24eaaa4e
- allow unathentnticated nodejs package · 38319d94
  Piotr Gawron authored Oct 07, 2021
  
  38319d94
- node certificate is not valid, ignore it for now · 9460008d
  Piotr Gawron authored Oct 07, 2021
  
  9460008d
06 Oct, 2021 1 commit
- nodejs 9 is not supported anymore · 03b3e3f7
  Piotr Gawron authored Oct 06, 2021
  
  03b3e3f7
26 Aug, 2021 2 commits
- Merge branch 'pubmed-api-updated' into 'devel_15.1.x' · 3bd995fe
  Piotr Gawron authored Aug 26, 2021
```
eureopepmc version changed

See merge request !1330
```
  3bd995fe
- eureopepmc version changed · 71c57f34
  Piotr Gawron authored Aug 26, 2021
  
  71c57f34
11 Aug, 2021 2 commits
- Merge branch '1528-cazy-issue' into 'devel_15.1.x' · 0e6b2279
  Piotr Gawron authored Aug 11, 2021
```
cazy db was updated and contains different data

See merge request !1325
```
  0e6b2279
- cazy db was updated and contains different data · e7e8b624
  Piotr Gawron authored Aug 11, 2021
  
  e7e8b624
09 Jun, 2021 2 commits
- Merge branch 'ensembl-version-changed' into 'devel_15.1.x' · 6c244f17
  Piotr Gawron authored Jun 09, 2021
```
ensembl version changed

See merge request !1308
```
  6c244f17
- ensembl version changed · bd39cac1
  Piotr Gawron authored Jun 09, 2021
  
  bd39cac1
30 Apr, 2021 6 commits
- Merge branch '1454-phenotype-reaction' into 'devel_15.1.x' · b417b25f
  Piotr Gawron authored Apr 30, 2021
```
Resolve "Orthogonal reactions drawn wrongly when linking to phenotypes and drugs"

See merge request !1306
```
  b417b25f
- changelog updated · 3cdc2b41
  Piotr Gawron authored Apr 30, 2021
  
  3cdc2b41
- drug shape in CellDesigner is slightly different · 24c85641
  Piotr Gawron authored Apr 30, 2021
  
  24c85641
- phenotype shape changed to reflect celldesigner shapes better · 4d6b36cf
  Piotr Gawron authored Apr 30, 2021
  
  4d6b36cf
- Merge branch '1476-complex-state' into 'devel_15.1.x' · 349f410e
  Piotr Gawron authored Apr 30, 2021
```
structural state is available for complexes

See merge request !1305
```
  349f410e
- structural state is available for complexes · 0e9498da
  Piotr Gawron authored Apr 30, 2021
  
  0e9498da
18 Mar, 2021 2 commits
- Merge branch 'ensembl-version-changed' into 'devel_15.1.x' · a5f26f1e
  Piotr Gawron authored Mar 18, 2021
```
ensemble version changed

See merge request !1284
```
  a5f26f1e
- ensemble version changed · 4af8e5d7
  Piotr Gawron authored Mar 18, 2021
  
  4af8e5d7
09 Feb, 2021 2 commits
- Merge branch '1449-search-listener' into 'devel_15.1.x' · 8db5c05a
  Piotr Gawron authored Feb 09, 2021
```
SearchListener was not triggered when clicking on highlighted elements

See merge request !1275
```
  8db5c05a
- SearchListener was not triggered when clicking on highlighted elements · 1ddb5ae0
  Piotr Gawron authored Feb 09, 2021
  
  1ddb5ae0