Commits · c9d686eea7dcf3e91d1d32eae47933625972de96 · minerva / core · GitLab

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12 Feb, 2018 40 commits
- species types are assigned based on sbo terms · c9d686ee
  Piotr Gawron authored Feb 07, 2018
  
  c9d686ee
- unit tests for parsing sbo terms into species type · 6f47fe03
  Piotr Gawron authored Feb 07, 2018
  
  6f47fe03
- species parser extracted to separte package · 17ba584e
  Piotr Gawron authored Feb 07, 2018
  
  17ba584e
- parsing of annotation added · d9928f4b
  Piotr Gawron authored Feb 07, 2018
  
  d9928f4b
- unit test fixed (model doesnt allow reaction with duplicated ids) · 5fb25548
  Piotr Gawron authored Feb 07, 2018
  
  5fb25548
- annotatio test files moved to converter · 79f18377
  Piotr Gawron authored Feb 07, 2018
  
  79f18377
- xml parser moved to converter (so all converter have access to it) · 5f57c4bc
  Piotr Gawron authored Feb 07, 2018
  
  5f57c4bc
- unit tests fixed - it's not allowed to have reactions with the same id in the model · dba2e36a
  Piotr Gawron authored Feb 07, 2018
  
  dba2e36a
- copying kinetics shouldn't copy elements · 2e358315
  Piotr Gawron authored Feb 07, 2018
  
  2e358315
- new constructors added (with reaction id arg) · 1a11a841
  Piotr Gawron authored Feb 07, 2018
  
  1a11a841
- copying of model includes information about kinetics, functions, parameters · d2c2cd10
  Piotr Gawron authored Feb 07, 2018
  
  d2c2cd10
- persistence annotations added · 8be2e056
  Piotr Gawron authored Feb 06, 2018
  
  8be2e056
- import export of sbml functions and parameters · f08cfc1e
  Piotr Gawron authored Feb 06, 2018
  
  f08cfc1e
- parsing of global parameters supported · eaea8d6f
  Piotr Gawron authored Feb 06, 2018
  
  eaea8d6f
- full import/export of reaction kinetics · 54134e72
  Piotr Gawron authored Feb 06, 2018
  
  54134e72
- forbid adding reactions with the same id · 1a8bfef7
  Piotr Gawron authored Feb 06, 2018
  
  1a8bfef7
- allow to remove element · 51377a45
  Piotr Gawron authored Feb 06, 2018
  
  51377a45
- reaction comparator use new collection set comaprator · 0c049f2c
  Piotr Gawron authored Feb 06, 2018
  
  0c049f2c
- simple export of reaction kinetics · db9da582
  Piotr Gawron authored Feb 05, 2018
  
  db9da582
- kinetics equation can contain compartment id · 2d8b3e82
  Piotr Gawron authored Feb 02, 2018
  
  2d8b3e82
- import of sbml kinetics · e3ea0423
  Piotr Gawron authored Feb 02, 2018
  
  e3ea0423
- export of unit definition added · 6f235bae
  Piotr Gawron authored Feb 02, 2018
  
  6f235bae
- comparator of model includes functions, parameters, units · 62c58a17
  Piotr Gawron authored Feb 02, 2018
  
  62c58a17
- import of sbml reaction kinetics added · abd318d1
  Piotr Gawron authored Feb 02, 2018
  
  abd318d1
- export of kinetics to CellDeisgner added · 91632a3b
  Piotr Gawron authored Feb 02, 2018
  
  91632a3b
- parsing of species kinetics parameters added · be3c8353
  Piotr Gawron authored Feb 01, 2018
  
  be3c8353
- kinetics comparators · d40b3f05
  Piotr Gawron authored Feb 01, 2018
  
  d40b3f05
- generic set comparator added · 1a78b73a
  Piotr Gawron authored Jan 31, 2018
  
  1a78b73a
- comparators refactored - common functionality extracted to abstract class · 1afa2c3a
  Piotr Gawron authored Jan 31, 2018
  
  1afa2c3a
- kinetics parser added · 9958d303
  Piotr Gawron authored Jan 30, 2018
  
  9958d303
- support for SBML units and parameters added · 6ca6a3f5
  Piotr Gawron authored Jan 29, 2018
  
  6ca6a3f5
- parser of sbml function · ae94a782
  Piotr Gawron authored Jan 29, 2018
  
  ae94a782
- Model contain SbmlFunction collection · 7c4d21e2
  Piotr Gawron authored Jan 29, 2018
  
  7c4d21e2
- export/import of name/id supported · 66253f89
  Piotr Gawron authored Jan 11, 2018
  
  66253f89
- sbml parser is available via rest API · 387d7597
  Piotr Gawron authored Jan 11, 2018
  
  387d7597
- invalid file extracted to separate example list · 45c4fbb1
  Piotr Gawron authored Jan 09, 2018
  
  45c4fbb1
- export of sbml trigger is supported now · 565659de
  Piotr Gawron authored Jan 09, 2018
  
  565659de
- export of reaction layout added · d5e5d509
  Piotr Gawron authored Jan 09, 2018
  
  d5e5d509
- export of sbml reaction with few graphical representation handled · 97f0c33a
  Piotr Gawron authored Jan 09, 2018
  
  97f0c33a
- notes are extracted properly · b3c504ac
  Piotr Gawron authored Jan 09, 2018
  
  b3c504ac