Commits · 6896ff56f0081d71925a615a2692859387613213 · minerva / core

17 Dec, 2018 26 commits
- default ul logo address fixed · 6896ff56
  Piotr Gawron authored Dec 17, 2018
  
  6896ff56
- Merge branch 'error-message-improvement' into 'master' · e34f4a49
  Piotr Gawron authored Dec 17, 2018
```
error message is improved when problem with stoichiometry occurs

See merge request !535
```
  e34f4a49
- error message is improved when problem with stoichiometry occurs · aabd0dc8
  Piotr Gawron authored Dec 17, 2018
  
  aabd0dc8
- Merge branch '589-sbml-upload-error-files-from-biomodels' into 'master' · 54a28e1a
  Piotr Gawron authored Dec 17, 2018
```
Resolve "SBML upload error, files from BioModels"

Closes #589

See merge request !521
```
  54a28e1a
- throw proper exceptions · 0307845f
  Piotr Gawron authored Dec 17, 2018
  
  0307845f
- those files ar eparseable after implementing new features in the parser · 9238d521
  Piotr Gawron authored Dec 17, 2018
  
  9238d521
- when exporting unit definition sbml level is enforced · 3ec55868
  Piotr Gawron authored Dec 17, 2018
  
  3ec55868
- invalid urn removed from kegg genes · 29d9b5ac
  Piotr Gawron authored Dec 17, 2018
  
  29d9b5ac
- operator sign fixed · 26357df8
  Piotr Gawron authored Dec 17, 2018
  
  26357df8
- Merge branch 'tair-to-uniprot' into 'master' · c5c6f20a
  Piotr Gawron authored Dec 17, 2018
```
Obtain TAIR-UniProt mapping from UniProt instead of from TAIR

See merge request !528
```
  c5c6f20a
- empty kinetic law was throwing an exception · 67e137e8
  Piotr Gawron authored Dec 13, 2018
  
  67e137e8
- proper exception is thrown when incomplete miriam uri is provided · bcef5c80
  Piotr Gawron authored Dec 12, 2018
  
  bcef5c80
- empty sbml results in non-zero dimension model · 8e213b7e
  Piotr Gawron authored Dec 12, 2018
  
  8e213b7e
- default compartment in kinetics is handled properly · 8c35e40a
  Piotr Gawron authored Dec 12, 2018
  
  8c35e40a
- reaction without reactant or product is parsed with warning (not an error) · 76b12023
  Piotr Gawron authored Dec 11, 2018
  
  76b12023
- when parsing sbml reaction with invalid number of reactant/products is... · a55168e4
  Piotr Gawron authored Dec 11, 2018
```
when parsing sbml reaction with invalid number of reactant/products is encountered the default reaction type is used
```
  a55168e4
- new miriam type urns added · 3e38a4e8
  Piotr Gawron authored Nov 23, 2018
  
  3e38a4e8
- obi miriam type added · 1870919e
  Piotr Gawron authored Nov 23, 2018
  
  1870919e
- exceptions change to warnings · 16dae782
  Piotr Gawron authored Nov 23, 2018
  
  16dae782
- taxonomy miriam type recognizes also new urn · 42c58d14
  Piotr Gawron authored Nov 23, 2018
  
  42c58d14
- biomodels miriam type added · 8436380d
  Piotr Gawron authored Nov 23, 2018
  
  8436380d
- vcard nodes are ignored for now · 9fe16afb
  Piotr Gawron authored Nov 23, 2018
  
  9fe16afb
- Merge branch 'problematic-unit-tests' into 'master' · b0fc1748
  Piotr Gawron authored Dec 17, 2018
```
project is removed after test is finished

See merge request !534
```
  b0fc1748
- retrieval of uniprot id in tair annotator queries directly uniprot to obtain the mapping · 6109bce8
  David Hoksza authored Dec 14, 2018 and Piotr Gawron committed Dec 17, 2018
  
  6109bce8
- Merge branch 'spring-config-update' into 'master' · 402fd724
  Piotr Gawron authored Dec 17, 2018
```
Spring config update

Closes #565

See merge request !499
```
  402fd724
- project is removed after test is finished · 99306d72
  Piotr Gawron authored Dec 17, 2018
  
  99306d72
14 Dec, 2018 3 commits
- Merge branch 'master' into spring-config-update · 2dfa6736
  Piotr Gawron authored Dec 14, 2018
  
  2dfa6736
- Merge branch 'reactome-model-change' into 'master' · a107d684
  Piotr Gawron authored Dec 14, 2018
```
reactome model changed

See merge request !533
```
  a107d684
- reactome model changed · 95d79301
  Piotr Gawron authored Dec 14, 2018
  
  95d79301
11 Dec, 2018 2 commits
- Merge branch 'unit-test-fail-due-to-ftp-content-change' into 'master' · 34a13a50
  Piotr Gawron authored Dec 11, 2018
```
unit tests started to fail because ftp.informatik.rwth-aachen.de stopped hosting…

See merge request !522
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  34a13a50
- unit tests started to fail because ftp.informatik.rwth-aachen.de stopped... · 51f05c39
  Piotr Gawron authored Dec 11, 2018
```
unit tests started to fail because ftp.informatik.rwth-aachen.de stopped hosting debian images which files were used in our unit testing
```
  51f05c39
23 Nov, 2018 2 commits
- defaulting to /index.xhtml for everything (for now) · eea87626
  Sascha Herzinger authored Nov 23, 2018
  
  eea87626
- properly resolve resource paths · 094848d9
  Sascha Herzinger authored Nov 23, 2018
  
  094848d9
20 Nov, 2018 3 commits
- Merge branch '578-upload-of-genetic_variant-overlay-not-working' into 'master' · 70a45435
  Piotr Gawron authored Nov 20, 2018
```
Resolve "Upload of genetic_variant overlay not working"

Closes #578

See merge request !514
```
  70a45435
- there was a problem with uploading layouts after project was modified · 8f4c536c
  Piotr Gawron authored Nov 20, 2018
  
  8f4c536c
- when adding/editing overlay hide checkbox with google maps consent if it's not necessary · dc6957b7
  Piotr Gawron authored Nov 20, 2018
  
  dc6957b7
19 Nov, 2018 4 commits
- Merge branch '324-compartment-annotation' into 'master' · 647b3940
  Piotr Gawron authored Nov 19, 2018
```
Resolve "Compartment annotation"

Closes #324

See merge request !513
```
  647b3940
- when clicking on compartment border compartment is highlighted · e6185865
  Piotr Gawron authored Nov 19, 2018
  
  e6185865
- Promise call replaced with synchronous code · 3364e660
  Piotr Gawron authored Nov 19, 2018
  
  3364e660
- assert error message is more verbose · 10237e90
  Piotr Gawron authored Nov 19, 2018
  
  10237e90