Commits · 15d235c978280e2ebc76f38dc22552a1c9f2d049 · minerva / core

30 Mar, 2020 4 commits
- kinetic parameter with infinity can be parsed properly · 15d235c9
  Piotr Gawron authored Mar 30, 2020
  
  15d235c9
- export to cell deisgner should not produce compartment alias id shorter than 2 characters · 071bd368
  Piotr Gawron authored Mar 30, 2020
  
  071bd368
- import of complex with no border fixed · 41725e7d
  Piotr Gawron authored Mar 30, 2020
  
  41725e7d
- miRTarBase is down · 221794ab
  Piotr Gawron authored Mar 30, 2020
  
  221794ab
16 Mar, 2020 6 commits
- Merge branch '1191-problem-with-annotations' into 'devel_14.0.x' · 2d86e311
  Piotr Gawron authored Mar 16, 2020
```
reference list visualization

See merge request !1087
```
  2d86e311
- long annotations were split to new line which caused problems · e961e41e
  Piotr Gawron authored Mar 16, 2020
  
  e961e41e
- Merge branch '1191-problem-with-annotations' into 'devel_14.0.x' · 8ff78540
  Piotr Gawron authored Mar 16, 2020
```
Resolve "annotations are not parsed properly"

See merge request !1086
```
  8ff78540
- drugbank updated data · 51e39c43
  Piotr Gawron authored Mar 16, 2020
  
  51e39c43
- number of targets decreased in the source database for PONATINIB · c1afe673
  Piotr Gawron authored Mar 16, 2020
  
  c1afe673
- identifiers.org uris were not properly parsed · 1e8a2302
  Piotr Gawron authored Mar 16, 2020
  
  1e8a2302
27 Feb, 2020 3 commits
- Merge branch '1063-import-sbgn-file' into 'devel_14.0.x' · 61cc3462
  Piotr Gawron authored Feb 27, 2020
```
Resolve "import of sbgn files"

See merge request !1075
```
  61cc3462
- changelog updated · 81e925a8
  Piotr Gawron authored Feb 27, 2020
  
  81e925a8
- import of sbgn process without port crashed u pload · 8c9585c8
  Piotr Gawron authored Feb 27, 2020
  
  8c9585c8
25 Feb, 2020 7 commits
- Merge branch '1140-corrupted-drug-db' into 'devel_14.0.x' · 88282e74
  Piotr Gawron authored Feb 25, 2020
```
when there is problem with deserialization carry on without throwing error

See merge request !1072
```
  88282e74
- when there is problem with deserialization carry on without throwing error · 213fe61b
  Piotr Gawron authored Feb 25, 2020
  
  213fe61b
- Merge branch '1063-import-sbgn-file' into 'devel_14.0.x' · 2fcf69ec
  Piotr Gawron authored Feb 25, 2020
```
Resolve "import of sbgn files"

See merge request !1071
```
  2fcf69ec
- invalid port in sbgn production caused issues · 9aca65b0
  Piotr Gawron authored Feb 25, 2020
  
  9aca65b0
- handle af reactions in pd sbgn · 0a6df492
  Piotr Gawron authored Feb 25, 2020
  
  0a6df492
- Merge branch '1063-import-sbgn-file' into 'devel_14.0.x' · 5d5470c9
  Piotr Gawron authored Feb 25, 2020
```
problematic consumption and reversed reaction are parsed now

See merge request !1070
```
  5d5470c9
- problematic consumption and reversed reaction are parsed now · 8570b8df
  Piotr Gawron authored Feb 25, 2020
  
  8570b8df
24 Feb, 2020 16 commits
- Merge branch '1132-transcription-site-color' into 'devel_14.0.x' · dcf2b8ee
  Piotr Gawron authored Feb 24, 2020
```
Resolve "Transcription Site colour is not white black in Empty view"

See merge request !1069
```
  dcf2b8ee
- check for gene color only if gene is defiend · 03cf523d
  Piotr Gawron authored Feb 24, 2020
  
  03cf523d
- don't fetch glyph content if glyph does not exist · ab6bee06
  Piotr Gawron authored Feb 24, 2020
  
  ab6bee06
- when no colors are used in gene then transcription factor doesn't use colors as well · 33bad0b4
  Piotr Gawron authored Feb 24, 2020
  
  33bad0b4
- export map with glyphs crashed · f238fef8
  Piotr Gawron authored Feb 24, 2020
  
  f238fef8
- Merge branch '1123-empty-data-overlay' into 'devel_14.0.x' · 363f7008
  Piotr Gawron authored Feb 24, 2020
```
upload of empty data overlay file resulted in an error

See merge request !1067
```
  363f7008
- Merge remote-tracking branch 'origin/devel_14.0.x' into 1123-empty-data-overlay · 8d21b8da
  Piotr Gawron authored Feb 24, 2020
  
  8d21b8da
- upload of empty data overlay file resulted in an error · 58ba0629
  Piotr Gawron authored Feb 24, 2020
  
  58ba0629
- Merge branch '1065-overlay-in-zip' into 'devel_14.0.x' · 86be8a9c
  Piotr Gawron authored Feb 24, 2020
```
use file name as a name when necessary

See merge request !1066
```
  86be8a9c
- use file name as a name when necessary · 4ccfad90
  Piotr Gawron authored Feb 24, 2020
  
  4ccfad90
- Merge branch '1121-remove-overlay-twice' into 'devel_14.0.x' · d7e9aad5
  Piotr Gawron authored Feb 24, 2020
```
don't allow to remove data overlay twice

See merge request !1065
```
  d7e9aad5
- don't allow to remove data overlay twice · e3b27d47
  Piotr Gawron authored Feb 24, 2020
  
  e3b27d47
- Merge branch '1109-reduced-trigger' into 'devel_14.0.x' · 9170c859
  Piotr Gawron authored Feb 24, 2020
```
CellDesigner sometimes marked reduced notation reaction as reversible even...

See merge request !1064
```
  9170c859
- CellDesigner sometimes marked reduced notation reaction as reversible even... · a6f6ea1e
  Piotr Gawron authored Feb 24, 2020
```
CellDesigner sometimes marked reduced notation reaction as reversible even though they should not be
```
  a6f6ea1e
- Merge branch '1103-full-transparent-complexes' into 'devel_14.0.x' · dc80e6f1
  Piotr Gawron authored Feb 24, 2020
```
CellDesigner incorrectly encode transparent colors

See merge request !1063
```
  dc80e6f1
- CellDesigner incorrectly encode transparent colors · 5ca7ef77
  Piotr Gawron authored Feb 24, 2020
  
  5ca7ef77
21 Feb, 2020 2 commits
- Merge branch '1097-refresh-data-overlay' into 'devel_14.0.x' · bc3b1871
  Piotr Gawron authored Feb 21, 2020
```
refresh data overlay should hide data overlays that were removed

See merge request !1061
```
  bc3b1871
- refresh data overlay should hide data overlays that were removed · d4b9cba2
  Piotr Gawron authored Feb 21, 2020
  
  d4b9cba2
03 Feb, 2020 2 commits
- Merge branch '1110-sbml-thread-safe-issue' into 'devel_14.0.x' · 25d60a2f
  Piotr Gawron authored Feb 03, 2020
```
workaround for bug in JSBML library...

See merge request !1057
```
  25d60a2f
- workaround for bug in JSBML library... · 0adda777
  Piotr Gawron authored Feb 03, 2020
```
workaround for bug in JSBML library (https://github.com/sbmlteam/jsbml/issues/195) XMLNode.convertStringToXMLNode is not thread safe
```
  0adda777