From ff2ec80f57b2cc2fcc4fab731140e042d73d915e Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Wed, 23 Oct 2019 13:20:19 +0200
Subject: [PATCH] copy method implemented for structural state
---
.../java/lcsb/mapviewer/model/map/species/Species.java | 4 +++-
.../model/map/species/field/StructuralState.java | 8 ++++----
2 files changed, 7 insertions(+), 5 deletions(-)
diff --git a/model/src/main/java/lcsb/mapviewer/model/map/species/Species.java b/model/src/main/java/lcsb/mapviewer/model/map/species/Species.java
index ed26df150f..8d39fb32d1 100644
--- a/model/src/main/java/lcsb/mapviewer/model/map/species/Species.java
+++ b/model/src/main/java/lcsb/mapviewer/model/map/species/Species.java
@@ -199,7 +199,9 @@ public abstract class Species extends Element {
substanceUnitRawType = original.substanceUnitRawType;
uniprots = original.getUniprots();
- structuralState = original.structuralState;
+ if (original.structuralState != null) {
+ setStructuralState(original.structuralState.copy());
+ }
// don't copy reaction nodes
}
diff --git a/model/src/main/java/lcsb/mapviewer/model/map/species/field/StructuralState.java b/model/src/main/java/lcsb/mapviewer/model/map/species/field/StructuralState.java
index 6e292ef3c7..bc8637150d 100644
--- a/model/src/main/java/lcsb/mapviewer/model/map/species/field/StructuralState.java
+++ b/model/src/main/java/lcsb/mapviewer/model/map/species/field/StructuralState.java
@@ -8,11 +8,8 @@ import javax.persistence.*;
import org.apache.logging.log4j.LogManager;
import org.apache.logging.log4j.Logger;
-import org.hibernate.annotations.Cascade;
-import org.hibernate.annotations.CascadeType;
import org.hibernate.annotations.Type;
-import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.model.map.species.Species;
/**
@@ -65,6 +62,9 @@ public class StructuralState implements Serializable {
public StructuralState(StructuralState mr) {
this.value = mr.getValue();
this.position = mr.position;
+ this.width = mr.getWidth();
+ this.height = mr.getHeight();
+ this.fontSize = mr.getFontSize();
}
public Species getSpecies() {
@@ -84,7 +84,7 @@ public class StructuralState implements Serializable {
}
public StructuralState copy() {
- throw new NotImplementedException();
+ return new StructuralState(this);
}
public String getValue() {
--
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