Commit f062dd04 authored by Piotr Gawron's avatar Piotr Gawron
Browse files

use europe mirror for UCSC files

parent 24647eee
Pipeline #48229 passed with stage
in 13 minutes and 24 seconds
......@@ -299,7 +299,7 @@ public class BigFileCache {
if (!FTPReply.isPositiveCompletion(reply)) {
throw new IOException("FTP server refused connection.");
}
// ftp.enterLocalPassiveMode();
ftp.enterLocalPassiveMode();
ftp.login("anonymous", "");
ftp.setFileType(FTP.BINARY_FILE_TYPE);
......@@ -638,7 +638,7 @@ public class BigFileCache {
if (!FTPReply.isPositiveCompletion(reply)) {
throw new IOException("FTP server refused connection.");
}
// ftp.enterLocalPassiveMode();
ftp.enterLocalPassiveMode();
ftp.login("anonymous", "");
ftp.setFileType(FTP.BINARY_FILE_TYPE);
......@@ -848,7 +848,7 @@ public class BigFileCache {
if (!FTPReply.isPositiveCompletion(reply)) {
throw new IOException("FTP server refused connection.");
}
// ftp.enterLocalPassiveMode();
ftp.enterLocalPassiveMode();
ftp.login("anonymous", "");
ftp.setFileType(FTP.BINARY_FILE_TYPE);
......
......@@ -43,7 +43,7 @@ public class UcscReferenceGenomeConnector extends AbstractReferenceGenomeConnect
/**
* Server domain name.
*/
private static final String SERVER = "hgdownload.cse.ucsc.edu";
private static final String SERVER = "hgdownload-euro.soe.ucsc.edu";
/**
* Default class logger.
*/
......@@ -224,7 +224,7 @@ public class UcscReferenceGenomeConnector extends AbstractReferenceGenomeConnect
throw new FileNotAvailableException(
"Cannot find file with genome for: " + organism + "; " + version + ". FTP server refused connection.");
} else {
// ftp.enterLocalPassiveMode();
ftp.enterLocalPassiveMode();
ftp.login("anonymous", "");
ftp.setFileType(FTP.BINARY_FILE_TYPE);
......@@ -324,7 +324,7 @@ public class UcscReferenceGenomeConnector extends AbstractReferenceGenomeConnect
* @return local path on ftp server to folder with data about reference genome
*/
private String getGenomePath(MiriamData organism, String version) {
return "/goldenPath/" + version + "/bigZips/";
return "/apache/htdocs/goldenPath/" + version + "/bigZips/";
}
/**
......
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