From eaecc1df9600e7e12f99e86f1869963d9b316411 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Wed, 7 Nov 2018 14:20:31 +0100
Subject: [PATCH] unit test checking if model is the same after translation:
CellDesigner->Sbml->CellDesigner
---
.../sbml/SbmlExporterFromCellDesignerTest.java | 15 +++++++++------
1 file changed, 9 insertions(+), 6 deletions(-)
diff --git a/converter-sbml/src/test/java/lcsb/mapviewer/converter/model/sbml/SbmlExporterFromCellDesignerTest.java b/converter-sbml/src/test/java/lcsb/mapviewer/converter/model/sbml/SbmlExporterFromCellDesignerTest.java
index 50d616057f..db0bfcba14 100644
--- a/converter-sbml/src/test/java/lcsb/mapviewer/converter/model/sbml/SbmlExporterFromCellDesignerTest.java
+++ b/converter-sbml/src/test/java/lcsb/mapviewer/converter/model/sbml/SbmlExporterFromCellDesignerTest.java
@@ -33,20 +33,22 @@ public class SbmlExporterFromCellDesignerTest {
try {
Model originalModel = cellDesignerXmlParser
.createModel(new ConverterParams().filename("testFiles/cell_designer_problems/heterodimer_association.xml"));
- Reaction r1 = originalModel.getReactions().iterator().next();
Model model = getModelAfterSerializing(originalModel);
- Reaction r2 = model.getReactions().iterator().next();
+ Reaction reaction1 = originalModel.getReactions().iterator().next();
+ Reaction reaction2 = model.getReactions().iterator().next();
+ //change reaction id - due to some issues it cannot be persisted properly in sbml format
+ reaction2.setIdReaction(reaction1.getIdReaction());
+
+ model.setName(originalModel.getName());
- logger.debug(r1.getOperators().iterator().next().getClass());
- logger.debug(r2.getOperators().iterator().next().getClass());
- logger.debug(r1.getReactants().get(1).getLine().getPoints());
- logger.debug(r2.getReactants().get(1).getLine().getPoints());
String cellDesignerXml = cellDesignerXmlParser.toXml(model);
ByteArrayInputStream stream = new ByteArrayInputStream(cellDesignerXml.getBytes("UTF-8"));
assertEquals(0, comparator.compare(model, originalModel));
Model cdModel = cellDesignerXmlParser.createModel(new ConverterParams().inputStream(stream));
+ cdModel.setName(originalModel.getName());
+
assertEquals(0, comparator.compare(model, cdModel));
} catch (Exception e) {
e.printStackTrace();
@@ -56,6 +58,7 @@ public class SbmlExporterFromCellDesignerTest {
private Model getModelAfterSerializing(Model originalModel) throws Exception {
String xml = exporter.toXml(originalModel);
+// logger.debug(xml);
ByteArrayInputStream stream = new ByteArrayInputStream(xml.getBytes("UTF-8"));
Model result = parser.createModel(new ConverterParams().inputStream(stream));
// showImage(originalModel);
--
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