diff --git a/converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/annotation/RestAnnotationParser.java b/converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/annotation/RestAnnotationParser.java
index 71357a911e75b274d81f18d5ec3762930216f72c..fdb539dc60edc3c3c4e016229128e1999e860f9c 100644
--- a/converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/annotation/RestAnnotationParser.java
+++ b/converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/annotation/RestAnnotationParser.java
@@ -351,7 +351,6 @@ public class RestAnnotationParser extends XmlParser {
}
if (notes.indexOf("</head>") >= 0) {
- logger.debug("Y");
notes = notes.substring(notes.indexOf("</head>") + "</head>".length());
}
notes = notes.replace("xmlns=\"http://www.w3.org/1999/xhtml\"", "");
diff --git a/converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlConverter.java b/converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlConverter.java
index 3618c14e952754629536e081d84f625e037a5c64..ee8b701a4e731ca7fdf5eb785acd43fe049ef506 100644
--- a/converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlConverter.java
+++ b/converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlConverter.java
@@ -3,13 +3,25 @@
*/
package lcsb.mapviewer.converter.model.sbgnml;
+import java.io.ByteArrayInputStream;
import java.io.File;
import java.io.FileInputStream;
+import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
+import java.io.OutputStream;
+import java.nio.charset.StandardCharsets;
import javax.xml.bind.JAXBException;
+import org.apache.commons.io.IOUtils;
+import org.apache.commons.lang3.StringEscapeUtils;
+import org.apache.log4j.Logger;
+import org.apache.log4j.spi.LoggingEvent;
+import org.sbgn.SbgnUtil;
+import org.sbgn.bindings.Sbgn;
+
+import lcsb.mapviewer.common.EventStorageLoggerAppender;
import lcsb.mapviewer.common.MimeType;
import lcsb.mapviewer.converter.ConverterException;
import lcsb.mapviewer.converter.ConverterParams;
@@ -18,67 +30,95 @@ import lcsb.mapviewer.converter.InvalidInputDataExecption;
import lcsb.mapviewer.model.map.InconsistentModelException;
import lcsb.mapviewer.model.map.model.Model;
-import org.sbgn.SbgnUtil;
-import org.sbgn.bindings.Sbgn;
-
/**
* @author Michał Kuźma
*
*/
public class SbgnmlXmlConverter implements IConverter {
+ Logger logger = Logger.getLogger(SbgnmlXmlConverter.class);
+
+ @Override
+ public Model createModel(ConverterParams params) throws InvalidInputDataExecption {
+ SbgnmlXmlParser parser = new SbgnmlXmlParser();
+ return parser.createModel(params);
+ }
+
+ @Override
+ public InputStream exportModelToInputStream(Model model) throws InconsistentModelException, ConverterException {
+ EventStorageLoggerAppender appender = new EventStorageLoggerAppender();
+ Sbgn exportedData;
+ StringBuilder notes = new StringBuilder("");
+ try {
+ Logger.getRootLogger().addAppender(appender);
+ SbgnmlXmlExporter exporter = new SbgnmlXmlExporter();
+ exportedData = exporter.toSbgnml(model);
+ if (!appender.getWarnings().isEmpty()) {
+ for (LoggingEvent event : appender.getWarnings()) {
+ if (event.getMessage() instanceof String) {
+ notes.append("\n" + ((String) event.getMessage()));
+ }
+ }
+ }
+ } finally {
+ Logger.getRootLogger().removeAppender(appender);
+ }
+ try {
+ File tempFile = File.createTempFile("sbgnmlExportTempFile", ".tmp");
+ InputStream result;
+ SbgnUtil.writeToFile(exportedData, tempFile);
+ try (FileInputStream inputStream = new FileInputStream(tempFile)) {
+ String xml = IOUtils.toString(inputStream, "UTF-8");
+ if (notes.length() > 0) {
+ int position = xml.indexOf("<map language");
+ if (position < 0) {
+ throw new ConverterException("problematic output sbgn. Cannot find map tag");
+ }
+ String notesNode = "<notes><html:body xmlns:html=\"http://www.w3.org/1999/xhtml\">" +
+ StringEscapeUtils.escapeXml(notes.toString()) + "\n</html:body></notes> ";
+ xml = xml.substring(0, position) + notesNode + xml.substring(position, xml.length());
+ }
+ result = new ByteArrayInputStream(xml.getBytes(StandardCharsets.UTF_8));
+ }
+ return result;
+ } catch (IOException e) {
+ throw new ConverterException(e);
+ } catch (JAXBException e) {
+ throw new ConverterException(e);
+ }
+ }
- @Override
- public Model createModel(ConverterParams params) throws InvalidInputDataExecption {
- SbgnmlXmlParser parser = new SbgnmlXmlParser();
- return parser.createModel(params);
- }
+ @Override
+ public File exportModelToFile(Model model, String filePath) throws InconsistentModelException, ConverterException {
+ InputStream inputStream = exportModelToInputStream(model);
- @Override
- public InputStream exportModelToInputStream(Model model) throws InconsistentModelException, ConverterException {
- SbgnmlXmlExporter exporter = new SbgnmlXmlExporter();
- Sbgn exportedData = exporter.toSbgnml(model);
- File tempFile;
- try {
- tempFile = File.createTempFile("sbgnmlExportTempFile", ".tmp");
- SbgnUtil.writeToFile(exportedData, tempFile);
- InputStream result = new FileInputStream(tempFile);
- return result;
- } catch (IOException e) {
- throw new ConverterException(e);
- } catch (JAXBException e) {
- throw new ConverterException(e);
- }
- }
+ try {
+ File exportedFile = new File(filePath);
+ if (exportedFile.getParentFile() != null) {
+ exportedFile.getParentFile().mkdirs();
+ }
+ OutputStream outputStream = new FileOutputStream(exportedFile);
+ IOUtils.copy(inputStream, outputStream);
+ outputStream.close();
- @Override
- public File exportModelToFile(Model model, String filePath) throws InconsistentModelException, ConverterException {
- SbgnmlXmlExporter exporter = new SbgnmlXmlExporter();
- Sbgn exportedData = exporter.toSbgnml(model);
- File exportedFile = new File(filePath);
- if (exportedFile.getParentFile() != null) {
- exportedFile.getParentFile().mkdirs();
- }
- try {
- SbgnUtil.writeToFile(exportedData, exportedFile);
- } catch (JAXBException e) {
- throw new ConverterException(e);
- }
- return exportedFile;
- }
+ return exportedFile;
+ } catch (IOException e) {
+ throw new ConverterException(e);
+ }
+ }
- @Override
- public String getCommonName() {
- return "SBGN-ML";
- }
+ @Override
+ public String getCommonName() {
+ return "SBGN-ML";
+ }
- @Override
- public MimeType getMimeType() {
- return MimeType.TEXT;
- }
+ @Override
+ public MimeType getMimeType() {
+ return MimeType.TEXT;
+ }
- @Override
- public String getFileExtension() {
- return "sbgn";
- }
+ @Override
+ public String getFileExtension() {
+ return "sbgn";
+ }
}
diff --git a/converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlExporter.java b/converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlExporter.java
index 39b313a2589585494b053bd25fd6f23cf36cb1b6..1b536d4ee9b56c9bcd04995456abea94c3786bcb 100644
--- a/converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlExporter.java
+++ b/converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlExporter.java
@@ -46,6 +46,7 @@ import lcsb.mapviewer.model.map.reaction.OrOperator;
import lcsb.mapviewer.model.map.reaction.Product;
import lcsb.mapviewer.model.map.reaction.Reactant;
import lcsb.mapviewer.model.map.reaction.Reaction;
+import lcsb.mapviewer.model.map.reaction.ReactionNode;
import lcsb.mapviewer.model.map.reaction.SplitOperator;
import lcsb.mapviewer.model.map.reaction.type.DissociationReaction;
import lcsb.mapviewer.model.map.reaction.type.HeterodimerAssociationReaction;
@@ -160,11 +161,14 @@ public class SbgnmlXmlExporter {
map.setLanguage(Language.PD.getName());
Sbgn sbgnData = new Sbgn();
- List<Species> aliases = model.getSpeciesList();
-
- for (Species a : aliases) {
- if (a.getComplex() == null) {
- Glyph newGlyph = aliasToGlyph(a);
+ for (Element element : model.getElements()) {
+ if (element instanceof Species) {
+ if (((Species) element).getComplex() == null) {
+ Glyph newGlyph = aliasToGlyph(element);
+ map.getGlyph().add(newGlyph);
+ }
+ } else if (element instanceof Compartment) {
+ Glyph newGlyph = aliasToGlyph(element);
map.getGlyph().add(newGlyph);
}
}
@@ -177,9 +181,8 @@ public class SbgnmlXmlExporter {
try {
map.getArc().add(getArcFromReducedReaction(reaction));
} catch (InvalidArgumentException e) {
- logger.warn("Invalid arc type."
- + " Reduced notation reaction found of type that is not compliant with SBGN-ML format." + " Reaction: "
- + reaction.getIdReaction());
+ logger.warn(eu.getElementTag(reaction) + "Invalid arc type."
+ + " Reduced notation reaction found of type that is not compliant with SBGN-ML format.");
}
continue;
}
@@ -187,7 +190,6 @@ public class SbgnmlXmlExporter {
}
sbgnData.setMap(map);
-
return sbgnData;
}
@@ -707,7 +709,8 @@ public class SbgnmlXmlExporter {
}
if (reaction.getProducts().get(0).getElement() instanceof Phenotype) {
- logger.warn("Found Phenotype being a reactant in process. That is discouraged");
+ logger.warn(eu.getElementTag(reaction.getProducts().get(0).getElement())
+ + "Found Phenotype being a reactant in process. That is discouraged");
}
arc.setSource(sourceTargetMap.get(reaction.getReactants().get(0).getElement().getElementId()));
@@ -801,13 +804,12 @@ public class SbgnmlXmlExporter {
List<Arc> arcList = new ArrayList<>();
// Parse all nodes except NodeOperators
- for (AbstractNode node : reaction.getNodes().stream().filter(n -> !(n instanceof NodeOperator))
- .collect(Collectors.toList())) {
+ for (ReactionNode node : reaction.getReactionNodes()) {
try {
arcList.add(getArcFromNode(node, glyphList));
} catch (InvalidArgumentException ex) {
- logger.warn("Node skipped in export process, since it is not compliant with SBGN-ML format: "
- + node.getClass().getName());
+ logger.warn(
+ eu.getElementTag(node) + "Node skipped in export process, since it is not compliant with SBGN-ML format.");
continue;
}
}
diff --git a/converter-SBGNML/src/test/java/lcsb/mapviewer/converter/model/sbgnml/CellDesignerToSbgnTest.java b/converter-SBGNML/src/test/java/lcsb/mapviewer/converter/model/sbgnml/CellDesignerToSbgnTest.java
index bc4b09114b81e6379c318af7a8c5825ae9f9574e..05fca1f6c7d59c5ad2d8092ced751872bb0ab45e 100644
--- a/converter-SBGNML/src/test/java/lcsb/mapviewer/converter/model/sbgnml/CellDesignerToSbgnTest.java
+++ b/converter-SBGNML/src/test/java/lcsb/mapviewer/converter/model/sbgnml/CellDesignerToSbgnTest.java
@@ -1,7 +1,11 @@
package lcsb.mapviewer.converter.model.sbgnml;
+import static org.junit.Assert.assertTrue;
+
import java.io.File;
+import java.io.FileInputStream;
+import org.apache.commons.io.IOUtils;
import org.apache.log4j.Logger;
import org.junit.After;
import org.junit.Before;
@@ -10,53 +14,97 @@ import org.junit.Test;
import lcsb.mapviewer.converter.ConverterParams;
import lcsb.mapviewer.converter.IConverter;
import lcsb.mapviewer.converter.model.celldesigner.CellDesignerXmlParser;
+import lcsb.mapviewer.model.map.compartment.Compartment;
import lcsb.mapviewer.model.map.model.Model;
+import lcsb.mapviewer.model.map.species.Element;
+import lcsb.mapviewer.modelutils.map.ElementUtils;
public class CellDesignerToSbgnTest {
- Logger logger = Logger.getLogger(CellDesignerToSbgnTest.class);
-
- @Before
- public void setUp() throws Exception {
- }
-
- @After
- public void tearDown() throws Exception {
- }
-
- @Test
- public void testSample() throws Exception {
- try {
- IConverter converter = new CellDesignerXmlParser();
- IConverter converter2 = new SbgnmlXmlConverter();
-
- Model model;
- model = converter.createModel(new ConverterParams().filename("testFiles/cellDesigner/sample.xml"));
-
- String output = File.createTempFile("temp-sbgn-output", ".sbgn").getAbsolutePath();
- converter2.exportModelToFile(model, output);
- new File(output).delete();
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
-
- @Test
- public void testSample2() throws Exception {
- try {
- IConverter converter = new CellDesignerXmlParser();
- IConverter converter2 = new SbgnmlXmlConverter();
-
- Model model;
- model = converter.createModel(new ConverterParams().filename("testFiles/cellDesigner/bubbles.xml"));
-
- String output = File.createTempFile("temp-sbgn-output", ".sbgn").getAbsolutePath();
- converter2.exportModelToFile(model, output);
- new File(output).delete();
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ Logger logger = Logger.getLogger(CellDesignerToSbgnTest.class);
+ ElementUtils eu = new ElementUtils();
+
+ @Before
+ public void setUp() throws Exception {
+ }
+
+ @After
+ public void tearDown() throws Exception {
+ }
+
+ @Test
+ public void testSample() throws Exception {
+ try {
+ IConverter converter = new CellDesignerXmlParser();
+ IConverter converter2 = new SbgnmlXmlConverter();
+
+ Model model = converter.createModel(new ConverterParams().filename("testFiles/cellDesigner/sample.xml"));
+
+ String output = File.createTempFile("temp-sbgn-output", ".sbgn").getAbsolutePath();
+ converter2.exportModelToFile(model, output);
+
+ try (FileInputStream inputStream = new FileInputStream(output)) {
+ String everything = IOUtils.toString(inputStream, "UTF-8");
+ assertTrue("Warnings are not exported into sbgn", everything.contains("Element type is not supported"));
+ }
+ converter2.createModel(new ConverterParams().filename(output));
+
+ new File(output).delete();
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+
+ }
+
+ @Test
+ public void testSample2() throws Exception {
+ try {
+ IConverter converter = new CellDesignerXmlParser();
+ IConverter converter2 = new SbgnmlXmlConverter();
+
+ Model model;
+ model = converter.createModel(new ConverterParams().filename("testFiles/cellDesigner/bubbles.xml"));
+
+ String output = File.createTempFile("temp-sbgn-output", ".sbgn").getAbsolutePath();
+ converter2.exportModelToFile(model, output);
+ new File(output).delete();
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
+
+ @Test
+ public void testCompartmentsExport() throws Exception {
+ try {
+ IConverter converter = new CellDesignerXmlParser();
+ IConverter converter2 = new SbgnmlXmlConverter();
+
+ Model model = converter.createModel(new ConverterParams().filename("testFiles/cellDesigner/neuron.xml"));
+
+ String output = File.createTempFile("temp-sbgn-output", ".sbgn").getAbsolutePath();
+ converter2.exportModelToFile(model, output);
+
+ converter2.createModel(new ConverterParams().filename(output));
+
+ String fileContent;
+ try (FileInputStream inputStream = new FileInputStream(output)) {
+ fileContent = IOUtils.toString(inputStream, "UTF-8");
+ }
+
+ for (Element element : model.getElements()) {
+ if (element instanceof Compartment) {
+ assertTrue(eu.getElementTag(element) + " comparmtent is not exported",
+ fileContent.contains(element.getElementId()));
+ }
+ }
+
+ new File(output).delete();
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+
+ }
}
diff --git a/converter-SBGNML/testFiles/cellDesigner/neuron.xml b/converter-SBGNML/testFiles/cellDesigner/neuron.xml
new file mode 100644
index 0000000000000000000000000000000000000000..895c90cd888a87114626134c6224f4dbaf4b97f6
--- /dev/null
+++ b/converter-SBGNML/testFiles/cellDesigner/neuron.xml
@@ -0,0 +1,16980 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml xmlns="http://www.sbml.org/sbml/level2/version4" xmlns:celldesigner="http://www.sbml.org/2001/ns/celldesigner" level="2" version="4">
+<model metaid="A_comprehensive_Parkinsons_disease_map" id="A_comprehensive_Parkinsons_disease_map">
+<listOfUnitDefinitions>
+<unitDefinition id="substance" name="substance" >
+<listOfUnits>
+<unit kind="mole" scale="0" exponent="1" multiplier="1.0" />
+</listOfUnits>
+</unitDefinition><unitDefinition id="volume" name="volume" >
+<listOfUnits>
+<unit kind="litre" scale="0" exponent="1" multiplier="1.0" />
+</listOfUnits>
+</unitDefinition><unitDefinition id="area" name="area" >
+<listOfUnits>
+<unit kind="metre" scale="0" exponent="2" multiplier="1.0" />
+</listOfUnits>
+</unitDefinition><unitDefinition id="length" name="length" >
+<listOfUnits>
+<unit kind="metre" scale="0" exponent="1" multiplier="1.0" />
+</listOfUnits>
+</unitDefinition><unitDefinition id="time" name="time" >
+<listOfUnits>
+<unit kind="second" scale="0" exponent="1" multiplier="1.0" />
+</listOfUnits>
+</unitDefinition></listOfUnitDefinitions>
+<listOfFunctionDefinitions>
+</listOfFunctionDefinitions>
+<annotation>
+<celldesigner:extension>
+<celldesigner:modelVersion>4.0</celldesigner:modelVersion>
+<celldesigner:modelDisplay sizeX="28928" sizeY="13893"/>
+<celldesigner:listOfIncludedSpecies>
+<celldesigner:species id="s_id_sa11936" name="PP2B"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1914</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11936</celldesigner:proteinReference>
+<celldesigner:name>PP2B</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11929" name="MAPK3"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1910</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11929</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+<celldesigner:modification residue="rs2" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>MAPK3</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11930" name="MAPK1"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1910</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11930</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+<celldesigner:modification residue="rs2" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>MAPK1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11961" name="PP2B"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>SemanticZoomLevelVisibility: 5
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1935</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11961</celldesigner:proteinReference>
+<celldesigner:name>PP2B</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11937" name="CALM1"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
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+<celldesigner:complexSpecies>s_id_csa1900</celldesigner:complexSpecies>
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+</celldesigner:species>
+<celldesigner:species id="s_id_sa11909" name="GRIA1"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: GRIA1
+Name: glutamate ionotropic receptor AMPA type subunit 1
+Previous Symbols: GLUR1
+Synonyms: GLURA, GluA1
+HGNC_ID: 4571
+EntrezGene_ID: 2890
+RefSeq_ID: NM_000827
+SemanticZoomLevelVisibility: 4
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+</celldesigner:species>
+<celldesigner:species id="s_id_sa11910" name="GRIA2"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: GRIA2
+Name: glutamate ionotropic receptor AMPA type subunit 2
+Previous Symbols: GLUR2
+Synonyms: GLURB, GluA2
+HGNC_ID: 4572
+EntrezGene_ID: 2891
+RefSeq_ID: NM_000826
+SemanticZoomLevelVisibility: 4
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+<celldesigner:species id="s_id_sa11889" name="CASP8_space_(p18)"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: CASP8
+Name: caspase 8
+Synonyms: Casp-8, FLICE, MACH, MCH5
+HGNC_ID: 1509
+EntrezGene_ID: 841
+RefSeq_ID: NM_001228
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+</rdf:Bag>
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+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11890" name="CASP8_space_(p10)"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: CASP8
+Name: caspase 8
+Synonyms: Casp-8, FLICE, MACH, MCH5
+HGNC_ID: 1509
+EntrezGene_ID: 841
+RefSeq_ID: NM_001228
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
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+</rdf:Bag>
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+</rdf:Description>
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+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1890</celldesigner:complexSpecies>
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+<celldesigner:name>CASP8_space_(p10)</celldesigner:name>
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+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11903" name="HTT"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: HTT
+Name: huntingtin
+Previous Symbols: HD
+Synonyms: IT15
+HGNC_ID: 4851
+EntrezGene_ID: 3064
+RefSeq_ID: NM_002111
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+
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+<rdf:Description rdf:about="#">
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+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:HTT"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1897</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11903</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfStructuralStates>
+<celldesigner:structuralState structuralState="mutated polyQ">mutated polyQ</celldesigner:structuralState></celldesigner:listOfStructuralStates>
+</celldesigner:state>
+<celldesigner:name>HTT</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11904" name="CTNNB1"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: CTNNB1
+Name: catenin beta 1
+Previous Symbols: CTNNB
+Synonyms: armadillo, beta-catenin
+HGNC_ID: 2514
+EntrezGene_ID: 1499
+RefSeq_ID: NM_001098210
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
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+<rdf:Description rdf:about="#">
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+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:CTNNB1"/>
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+<rdf:Bag>
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+</rdf:Bag>
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+<rdf:li rdf:resource="urn:miriam:ncbigene:1499"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1897</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11904</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>CTNNB1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11884" name="PRKACA"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: PRKACA
+Name: protein kinase cAMP-activated catalytic subunit alpha
+Synonyms: PKACa
+HGNC_ID: 9380
+EntrezGene_ID: 5566
+RefSeq_ID: NM_002730
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
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+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_002730"/>
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+</rdf:Bag>
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+<rdf:li rdf:resource="urn:miriam:ncbigene:5566"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1945</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11884</celldesigner:proteinReference>
+<celldesigner:name>PRKACA</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11885" name="PRKACB"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: PRKACB
+Name: protein kinase cAMP-activated catalytic subunit beta
+Synonyms: PKACb
+HGNC_ID: 9381
+EntrezGene_ID: 5567
+RefSeq_ID: NM_182948
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
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+<rdf:Description rdf:about="#">
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+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000142875"/>
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+<celldesigner:name>PRKACB</celldesigner:name>
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+</celldesigner:species>
+<celldesigner:species id="s_id_sa11886" name="PRKACG"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: PRKACG
+Name: protein kinase cAMP-activated catalytic subunit gamma
+Synonyms: PKACg
+HGNC_ID: 9382
+EntrezGene_ID: 5568
+RefSeq_ID: NM_002732
+SemanticZoomLevelVisibility: 4
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+<celldesigner:name>PRKACG</celldesigner:name>
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+<celldesigner:species id="s_id_csa1947" name="catalytic_BR_subunit"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 4
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
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+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1904</celldesigner:complexSpecies>
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+<celldesigner:name>catalytic_BR_subunit</celldesigner:name>
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+TransparencyZoomLevelVisibility: 4
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
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+</celldesigner:species>
+<celldesigner:species id="s_id_sa11887" name="AHCYL1"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: AHCYL1
+Name: adenosylhomocysteinase like 1
+Synonyms: IRBIT, PPP1R78, XPVKONA
+HGNC_ID: 344
+EntrezGene_ID: 10768
+RefSeq_ID: NM_001242673
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
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+</rdf:Bag>
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+<celldesigner:name>AHCYL1</celldesigner:name>
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+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11888" name="VIM"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: VIM
+Name: vimentin
+HGNC_ID: 12692
+EntrezGene_ID: 7431
+RefSeq_ID: NM_003380
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
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+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
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+<celldesigner:state>
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+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+<celldesigner:modification residue="rs2" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
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+<celldesigner:name>VIM</celldesigner:name>
+</celldesigner:speciesIdentity>
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+</celldesigner:species>
+<celldesigner:species id="s_id_sa11905" name="CFL1"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: CFL1
+Name: cofilin 1
+Previous Symbols: CFL
+HGNC_ID: 1874
+EntrezGene_ID: 1072
+RefSeq_ID: NM_005507
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
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+</rdf:Bag>
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+<celldesigner:state>
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+<celldesigner:name>CFL1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11906" name="CFL2"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: CFL2
+Name: cofilin 2
+Synonyms: NEM7
+HGNC_ID: 1875
+EntrezGene_ID: 1073
+RefSeq_ID: NM_138638
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
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+<celldesigner:proteinReference>p_s_id_sa11906</celldesigner:proteinReference>
+<celldesigner:state>
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+</celldesigner:state>
+<celldesigner:name>CFL2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11898" name="AHCYL1"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: AHCYL1
+Name: adenosylhomocysteinase like 1
+Synonyms: IRBIT, PPP1R78, XPVKONA
+HGNC_ID: 344
+EntrezGene_ID: 10768
+RefSeq_ID: NM_001242673
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+
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+<rdf:Description rdf:about="#">
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+<rdf:Bag>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:AHCYL1"/>
+</rdf:Bag>
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+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:344"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
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+<celldesigner:complexSpecies>s_id_csa1895</celldesigner:complexSpecies>
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+<celldesigner:proteinReference>p_s_id_sa11898</celldesigner:proteinReference>
+<celldesigner:name>AHCYL1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11899" name="ITPR3"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: ITPR3
+Name: inositol 1,4,5-trisphosphate receptor type 3
+Synonyms: IP3R3
+HGNC_ID: 6182
+EntrezGene_ID: 3710
+RefSeq_ID: NM_002224
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
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+<rdf:Description rdf:about="#">
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+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
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+<celldesigner:complexSpecies>s_id_csa1895</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11899</celldesigner:proteinReference>
+<celldesigner:name>ITPR3</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11925" name="GRIA1"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: GRIA1
+Name: glutamate ionotropic receptor AMPA type subunit 1
+Previous Symbols: GLUR1
+Synonyms: GLURA, GluA1
+HGNC_ID: 4571
+EntrezGene_ID: 2890
+RefSeq_ID: NM_000827
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
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+<rdf:Description rdf:about="#">
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+<rdf:li rdf:resource="urn:miriam:uniprot:P42261"/>
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+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:GRIA1"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_000827"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000155511"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:2890"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:4571"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1907</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11925</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>GRIA1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11926" name="GRIA2"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: GRIA2
+Name: glutamate ionotropic receptor AMPA type subunit 2
+Previous Symbols: GLUR2
+Synonyms: GLURB, GluA2
+HGNC_ID: 4572
+EntrezGene_ID: 2891
+RefSeq_ID: NM_000826
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+
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+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
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+<rdf:li rdf:resource="urn:miriam:uniprot:P42262"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
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+</bqbiol:isDescribedBy>
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+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:GRIA2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
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+<rdf:Bag>
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+<rdf:Bag>
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+</rdf:Bag>
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+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:2891"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1907</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11926</celldesigner:proteinReference>
+<celldesigner:name>GRIA2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11927" name="GRIA4"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: GRIA4
+Name: glutamate ionotropic receptor AMPA type subunit 4
+Previous Symbols: GLUR4
+Synonyms: GLURD, GluA4
+HGNC_ID: 4574
+EntrezGene_ID: 2893
+RefSeq_ID: NM_000829
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:4574"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
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+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:GRIA4"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
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+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_000829"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P48058"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:2893"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1907</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11927</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>GRIA4</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11928" name="GRIA3"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: GRIA3
+Name: glutamate ionotropic receptor AMPA type subunit 3
+Previous Symbols: GLUR3
+Synonyms: GLURC, GluA3, MRX94
+HGNC_ID: 4573
+EntrezGene_ID: 2892
+RefSeq_ID: NM_000828
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:4573"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:GRIA3"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000125675"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_000828"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:2892"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P42263"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1907</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11928</celldesigner:proteinReference>
+<celldesigner:name>GRIA3</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11911" name="HTT"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: HTT
+Name: huntingtin
+Previous Symbols: HD
+Synonyms: IT15
+HGNC_ID: 4851
+EntrezGene_ID: 3064
+RefSeq_ID: NM_002111
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P42858"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:4851"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:3064"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_002111"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000197386"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:HTT"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1902</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11911</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfStructuralStates>
+<celldesigner:structuralState structuralState="mutated polyQ">mutated polyQ</celldesigner:structuralState></celldesigner:listOfStructuralStates>
+</celldesigner:state>
+<celldesigner:name>HTT</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11938" name="RAP1GAP2"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: RAP1GAP2
+Name: RAP1 GTPase activating protein 2
+Previous Symbols: GARNL4
+Synonyms: KIAA1039
+HGNC_ID: 29176
+EntrezGene_ID: 23108
+RefSeq_ID: NM_015085
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000132359"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:RAP1GAP2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q684P5"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:23108"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_015085"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:29176"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1917</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11938</celldesigner:proteinReference>
+<celldesigner:name>RAP1GAP2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11939" name="RAP1GAP"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: RAP1GAP
+Name: RAP1 GTPase activating protein
+Previous Symbols: RAP1GA1
+Synonyms: KIAA0474, RAP1GAP1, RAP1GAPII
+HGNC_ID: 9858
+EntrezGene_ID: 5909
+RefSeq_ID: NM_002885
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_002885"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:RAP1GAP"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P47736"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:9858"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000076864"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:5909"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1917</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11939</celldesigner:proteinReference>
+<celldesigner:name>RAP1GAP</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11931" name="PPP2CA"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1911</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11931</celldesigner:proteinReference>
+<celldesigner:name>PPP2CA</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11932" name="PPP2CB"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1911</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11932</celldesigner:proteinReference>
+<celldesigner:name>PPP2CB</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:annotation>
+</celldesigner:species>
+<celldesigner:species id="s_id_sa11945" name="KCNN2"><celldesigner:notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: KCNN2
+Name: potassium calcium-activated channel subfamily N member 2
+Synonyms: KCa2.2, hSK2
+HGNC_ID: 6291
+EntrezGene_ID: 3781
+RefSeq_ID: NM_021614
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000080709"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:3781"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:6291"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q9H2S1"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:KCNN2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_021614"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</body></html></celldesigner:notes>
+<celldesigner:annotation>
+<celldesigner:complexSpecies>s_id_csa1924</celldesigner:complexSpecies>
+<celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11945</celldesigner:proteinReference>
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+</body></html></notes>
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+TransparencyZoomLevelVisibility: 5
+
+</body></html></notes>
+</compartment>
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+TransparencyZoomLevelVisibility: 6
+
+</body></html></notes>
+</compartment>
+<compartment metaid="s_id_ca187" id="s_id_ca187" name="ER" size="1" units="volume" outside="default" >
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+TransparencyZoomLevelVisibility: 7
+
+</body></html></notes>
+</compartment>
+<compartment metaid="default" id="default" name="" size="1" units="volume" >
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+</body></html></notes>
+</compartment>
+</listOfCompartments>
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+<celldesigner:name>Ca2_plus_</celldesigner:name>
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+<rdf:Description rdf:about="#">
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+</rdf:RDF>
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+Synonyms: 3', 5'-Cyclic AMP, adenosine 3', 5'-cyclic monophosphate, Adenosine 3', 5'-cyclic phosphate, Adenosine 3', 5'-phosphate, ADENOSINE-3', 5'-CYCLIC-MONOPHOSPHATE, cAMP, Cyclic adenylic acid, Cyclic AMP, Recon metabolite: camp
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+VMH database: <a href="http://vmh.uni.lu/#metabolite/camp">camp</a></body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
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+Name: beta-transducin repeat containing E3 ubiquitin protein ligase
+Synonyms: FBXW1A, Fwd1, bTrCP, bTrCP1, beta-TrCP1, betaTrCP
+HGNC_ID: 1144
+EntrezGene_ID: 8945
+RefSeq_ID: NM_033637
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
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+<celldesigner:proteinReference>p_s_id_sa11843</celldesigner:proteinReference>
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+<rdf:Description rdf:about="#">
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+<celldesigner:proteinReference>p_s_id_sa11790</celldesigner:proteinReference>
+<celldesigner:name>HTR6</celldesigner:name>
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+<rdf:Description rdf:about="#">
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+<species name="PP1" id="s_id_csa1941" metaid="s_id_csa1941" initialAmount="0.0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>PP1</celldesigner:name>
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+<rdf:Description rdf:about="#">
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+<celldesigner:proteinReference>p_s_id_sa11772</celldesigner:proteinReference>
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+<rdf:Description rdf:about="#">
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+</annotation>
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+<species name="GABA" id="s_id_sa11776" metaid="s_id_sa11776" initialAmount="0.0" charge="0" compartment="s_id_ca183"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>GABA</celldesigner:name>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
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+<rdf:Bag>
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+</rdf:RDF>
+</annotation>
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+<species name="Phospholipase_space_C" id="s_id_sa11734" metaid="s_id_sa11734" initialAmount="0.0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11734</celldesigner:proteinReference>
+<celldesigner:name>Phospholipase_space_C</celldesigner:name>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:hasPart>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR001192"/>
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+</rdf:RDF>
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+<celldesigner:proteinReference>p_s_id_sa11783</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
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+<celldesigner:name>PTPN5</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Calcineurin" id="s_id_csa1914" metaid="s_id_csa1914" initialAmount="0.0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>Calcineurin</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0004723"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:mesh:D019703"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="cAMP" id="s_id_sa11703" metaid="s_id_sa11703" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: 3',5'-cyclic AMP
+Synonyms: 3', 5'-Cyclic AMP, adenosine 3', 5'-cyclic monophosphate, Adenosine 3', 5'-cyclic phosphate, Adenosine 3', 5'-phosphate, ADENOSINE-3', 5'-CYCLIC-MONOPHOSPHATE, cAMP, Cyclic adenylic acid, Cyclic AMP, Recon metabolite: camp
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+VMH database: <a href="http://vmh.uni.lu/#metabolite/camp">camp</a></body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>cAMP</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A17489"/>
+</rdf:Bag>
+</bqbiol:is>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="ERK1_slash_2" id="s_id_csa1910" metaid="s_id_csa1910" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>ERK1_slash_2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR008349"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="cellular_space_calcium" id="s_id_sa11770" metaid="s_id_sa11770" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>cellular_space_calcium</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0006874"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Calcineurin" id="s_id_csa1935" metaid="s_id_csa1935" initialAmount="0.0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>Calcineurin</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0004723"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:mesh:D019703"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="RANBP9" id="s_id_sa11754" metaid="s_id_sa11754" initialAmount="0.0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: RANBP9
+Name: RAN binding protein 9
+Synonyms: RanBPM
+HGNC_ID: 13727
+EntrezGene_ID: 10048
+RefSeq_ID: NM_005493
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11754</celldesigner:proteinReference>
+<celldesigner:name>RANBP9</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:13727"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000010017"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q96S59"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_005493"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:RANBP9"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:10048"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Ca2_plus_" id="s_id_sa11769" metaid="s_id_sa11769" initialAmount="0.0" compartment="default"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>ION</celldesigner:class>
+<celldesigner:name>Ca2_plus_</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="synaptic_space_plasticity" id="s_id_sa11810" metaid="s_id_sa11810" initialAmount="0.0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>synaptic_space_plasticity</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0031915"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="chromatin_space_organization" id="s_id_sa11799" metaid="s_id_sa11799" initialAmount="0.0" charge="0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>chromatin_space_organization</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0006325"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="EEF2K" id="s_id_sa11711" metaid="s_id_sa11711" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: EEF2K
+Name: eukaryotic elongation factor 2 kinase
+Synonyms: eEF-2K
+HGNC_ID: 24615
+EntrezGene_ID: 29904
+RefSeq_ID: NM_013302
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11711</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>EEF2K</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:24615"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_013302"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:EEF2K"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:O00418"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000103319"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:29904"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PRKAR2B" id="s_id_sa11730" metaid="s_id_sa11730" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: PRKAR2B
+Name: protein kinase cAMP-dependent type II regulatory subunit beta
+Previous Symbols: PRKAR2
+HGNC_ID: 9392
+EntrezGene_ID: 5577
+RefSeq_ID: NM_002736
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11730</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>PRKAR2B</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:9392"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P31323"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000005249"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:PRKAR2B"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_002736"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:5577"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="RASGRP2" id="s_id_sa11760" metaid="s_id_sa11760" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: RASGRP2
+Name: RAS guanyl releasing protein 2
+Synonyms: CALDAG-GEFI
+HGNC_ID: 9879
+EntrezGene_ID: 10235
+RefSeq_ID: NM_153819
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11760</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>RASGRP2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_153819"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:RASGRP2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:9879"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q7LDG7"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000068831"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:10235"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="acetylcholine" id="s_id_sa11832" metaid="s_id_sa11832" initialAmount="0.0" compartment="default"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>acetylcholine</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Calmodulin" id="s_id_csa1916" metaid="s_id_csa1916" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>Calmodulin</celldesigner:name>
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+<rdf:Description rdf:about="#">
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+<rdf:li rdf:resource="urn:miriam:mesh:D002147"/>
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+<species name="PPP1R1B" id="s_id_sa11811" metaid="s_id_sa11811" initialAmount="0.0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11811</celldesigner:proteinReference>
+<celldesigner:state>
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+<celldesigner:name>PPP1R1B</celldesigner:name>
+</celldesigner:speciesIdentity>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
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+<species name="adenylyl_space_cyclase" id="s_id_csa1903" metaid="s_id_csa1903" initialAmount="0.0" charge="0" compartment="s_id_ca169"><annotation><celldesigner:extension><celldesigner:positionToCompartment>innerSurface</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>adenylyl_space_cyclase</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
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+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ec-code:4.6.1.1"/>
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+</rdf:RDF>
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+<species name="PP1" id="s_id_csa1928" metaid="s_id_csa1928" initialAmount="0.0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>PP1</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:mesh:D054645"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PP1" id="s_id_csa1913" metaid="s_id_csa1913" initialAmount="0.0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>PP1</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:mesh:D054645"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="postsynaptic_space_response" id="s_id_sa11717" metaid="s_id_sa11717" initialAmount="0.0" charge="0" compartment="s_id_ca168"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: excitatory postsynaptic potential
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+A process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>postsynaptic_space_response</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0060079"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PPP1R1B" id="s_id_sa11786" metaid="s_id_sa11786" initialAmount="0.0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11786</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs2" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>PPP1R1B</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="TF_space_EGR1" id="s_id_csa1944" metaid="s_id_csa1944" initialAmount="0.0" charge="0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>TF_space_EGR1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="RANBP9" id="s_id_sa11764" metaid="s_id_sa11764" initialAmount="0.0" charge="0" compartment="s_id_ca169"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: RANBP9
+Name: RAN binding protein 9
+Synonyms: RanBPM
+HGNC_ID: 13727
+EntrezGene_ID: 10048
+RefSeq_ID: NM_005493
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11764</celldesigner:proteinReference>
+<celldesigner:name>RANBP9</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:13727"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000010017"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q96S59"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_005493"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:RANBP9"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:10048"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PTPN5" id="s_id_sa11784" metaid="s_id_sa11784" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11784</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>PTPN5</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="EEF2K" id="s_id_sa11708" metaid="s_id_sa11708" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: EEF2K
+Name: eukaryotic elongation factor 2 kinase
+Synonyms: eEF-2K
+HGNC_ID: 24615
+EntrezGene_ID: 29904
+RefSeq_ID: NM_013302
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11708</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>EEF2K</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:24615"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_013302"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:EEF2K"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:O00418"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000103319"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:29904"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="ARPP21" id="s_id_sa11842" metaid="s_id_sa11842" initialAmount="0.0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11842</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>ARPP21</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PPP1R1B" id="s_id_sa11771" metaid="s_id_sa11771" initialAmount="0.0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11771</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>PPP1R1B</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="HTT" id="s_id_sa11738" metaid="s_id_sa11738" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: HTT
+Name: huntingtin
+Previous Symbols: HD
+Synonyms: IT15
+HGNC_ID: 4851
+EntrezGene_ID: 3064
+RefSeq_ID: NM_002111
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11738</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfStructuralStates>
+<celldesigner:structuralState structuralState="mutated polyQ">mutated polyQ</celldesigner:structuralState></celldesigner:listOfStructuralStates>
+</celldesigner:state>
+<celldesigner:name>HTT</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P42858"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:4851"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:3064"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_002111"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000197386"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:HTT"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="DRD1" id="s_id_sa11750" metaid="s_id_sa11750" initialAmount="0.0" charge="0" compartment="s_id_ca169"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: DRD1
+Name: dopamine receptor D1
+HGNC_ID: 3020
+EntrezGene_ID: 1812
+RefSeq_ID: NM_000794
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11750</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>DRD1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:DRD1"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_000794"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:1812"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000184845"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:3020"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P21728"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="ITGB1" id="s_id_sa11707" metaid="s_id_sa11707" initialAmount="0.0" charge="0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: ITGB1
+Name: integrin subunit beta 1
+Previous Symbols: FNRB, MSK12, MDF2
+Synonyms: CD29, GPIIA
+HGNC_ID: 6153
+EntrezGene_ID: 3688
+RefSeq_ID: NM_002211
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11707</celldesigner:proteinReference>
+<celldesigner:name>ITGB1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_002211"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P05556"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ITGB1"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:3688"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:6153"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000150093"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="ROCK" id="s_id_csa1906" metaid="s_id_csa1906" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>ROCK</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isPartOf>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR020684"/>
+</rdf:Bag>
+</bqbiol:isPartOf>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="AHCYL1" id="s_id_sa11757" metaid="s_id_sa11757" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: AHCYL1
+Name: adenosylhomocysteinase like 1
+Synonyms: IRBIT, PPP1R78, XPVKONA
+HGNC_ID: 344
+EntrezGene_ID: 10768
+RefSeq_ID: NM_001242673
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11757</celldesigner:proteinReference>
+<celldesigner:name>AHCYL1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000168710"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:O43865"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_001242673"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:10768"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:AHCYL1"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:344"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="TF_space_CREB" id="s_id_csa1920" metaid="s_id_csa1920" initialAmount="0.0" charge="0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>TF_space_CREB</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PKA" id="s_id_csa1931" metaid="s_id_csa1931" initialAmount="0.0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: cAMP-dependent protein kinase complex
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 7
+
+An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>PKA</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0005952"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="VIM" id="s_id_sa11745" metaid="s_id_sa11745" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: VIM
+Name: vimentin
+HGNC_ID: 12692
+EntrezGene_ID: 7431
+RefSeq_ID: NM_003380
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11745</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+<celldesigner:modification residue="rs2" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>VIM</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:7431"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_003380"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000026025"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P08670"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:12692"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:VIM"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="CaMKII" id="s_id_csa1937" metaid="s_id_csa1937" initialAmount="0.0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:state>
+<celldesigner:listOfStructuralStates>
+<celldesigner:structuralState structuralState="phosphorylated">phosphorylated</celldesigner:structuralState></celldesigner:listOfStructuralStates>
+</celldesigner:state>
+<celldesigner:name>CaMKII</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Ca2_plus_" id="s_id_sa11724" metaid="s_id_sa11724" initialAmount="0.0" compartment="s_id_ca187"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>ION</celldesigner:class>
+<celldesigner:name>Ca2_plus_</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="AMPA_space_receptor" id="s_id_csa1900" metaid="s_id_csa1900" initialAmount="0.0" charge="0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: AMPA glutamate receptor complex
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 4
+Charge: 0
+
+An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. The AMPA receptors mediate fast synaptic transmission in the CNS and are composed of subunits GluR1-4, products from separate genes. These subunits have an extracellular N-terminus and an intracellular C-terminus.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>AMPA_space_receptor</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0032281"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Ca2_plus_" id="s_id_sa11706" metaid="s_id_sa11706" initialAmount="0.0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>ION</celldesigner:class>
+<celldesigner:name>Ca2_plus_</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="RASGRF1" id="s_id_sa11821" metaid="s_id_sa11821" initialAmount="0.0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11821</celldesigner:proteinReference>
+<celldesigner:name>RASGRF1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:pubmed:16467520"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PINK1" id="s_id_sa11712" metaid="s_id_sa11712" initialAmount="0.0" charge="0" compartment="s_id_ca168"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: PINK1
+Name: PTEN induced putative kinase 1
+Previous Symbols: PARK6
+HGNC_ID: 14581
+EntrezGene_ID: 65018
+RefSeq_ID: NM_032409
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11712</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>PINK1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:65018"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q9BXM7"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:PINK1"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000158828"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_032409"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:14581"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="ITPR1" id="s_id_sa11713" metaid="s_id_sa11713" initialAmount="0.0" charge="0" compartment="s_id_ca187"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: ITPR1
+Name: inositol 1,4,5-trisphosphate receptor type 1
+Previous Symbols: SCA15, SCA16, SCA29
+Synonyms: ACV, IP3R1, Insp3r1, PPP1R94
+HGNC_ID: 6180
+EntrezGene_ID: 3708
+RefSeq_ID: NM_002222
+SemanticZoomLevelVisibility: 7
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11713</celldesigner:proteinReference>
+<celldesigner:name>ITPR1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_002222"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ITPR1"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:6180"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:3708"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000150995"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q14643"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="EGR1" id="s_id_sa11826" metaid="s_id_sa11826" initialAmount="0.0" charge="0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>RNA</celldesigner:class>
+<celldesigner:rnaReference>r_s_id_sa11826</celldesigner:rnaReference>
+<celldesigner:name>EGR1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Caspase_minus_8" id="s_id_csa1890" metaid="s_id_csa1890" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>Caspase_minus_8</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="cAMP" id="s_id_sa11795" metaid="s_id_sa11795" initialAmount="0.0" charge="0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: 3',5'-cyclic AMP
+Synonyms: 3', 5'-Cyclic AMP, adenosine 3', 5'-cyclic monophosphate, Adenosine 3', 5'-cyclic phosphate, Adenosine 3', 5'-phosphate, ADENOSINE-3', 5'-CYCLIC-MONOPHOSPHATE, cAMP, Cyclic adenylic acid, Cyclic AMP, Recon metabolite: camp
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+VMH database: <a href="http://vmh.uni.lu/#metabolite/camp">camp</a></body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>cAMP</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A17489"/>
+</rdf:Bag>
+</bqbiol:is>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="K_plus_" id="s_id_sa11761" metaid="s_id_sa11761" initialAmount="0.0" compartment="default"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>ION</celldesigner:class>
+<celldesigner:name>K_plus_</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PPP1R1B" id="s_id_sa11836" metaid="s_id_sa11836" initialAmount="0.0" charge="0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>RNA</celldesigner:class>
+<celldesigner:rnaReference>r_s_id_sa11836</celldesigner:rnaReference>
+<celldesigner:name>PPP1R1B</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="cannabinoid" id="s_id_sa11847" metaid="s_id_sa11847" initialAmount="0.0" compartment="default"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>cannabinoid</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="IP3_space_" id="s_id_sa11736" metaid="s_id_sa11736" initialAmount="0.0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: 1D-myo-inositol 1,4,5-trisphosphate
+Synonyms: 1, 4, 5-Insp3, 1D-myo-Inositol 1, 4, 5-trisphosphate, D-myo-Inositol 1, 4, 5-trisphosphate, D-MYO-INOSITOL-1, 4, 5-TRIPHOSPHATE, Inositol 1, 4, 5-trisphosphate, Ins(1, 4, 5)P3, InsP3, IP3, Recon metabolite: mi145p
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 0
+
+VMH database: <a href="http://vmh.uni.lu/#metabolite/mi145p">mi145p</a></body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>IP3_space_</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A16595"/>
+</rdf:Bag>
+</bqbiol:is>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PRKAR2B" id="s_id_sa11751" metaid="s_id_sa11751" initialAmount="0.0" charge="0" compartment="s_id_ca168"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: PRKAR2B
+Name: protein kinase cAMP-dependent type II regulatory subunit beta
+Previous Symbols: PRKAR2
+HGNC_ID: 9392
+EntrezGene_ID: 5577
+RefSeq_ID: NM_002736
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11751</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>PRKAR2B</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:9392"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P31323"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000005249"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:PRKAR2B"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_002736"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:5577"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="CTNNB1:HTT" id="s_id_csa1897" metaid="s_id_csa1897" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>CTNNB1:HTT</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="TRPV1" id="s_id_sa11794" metaid="s_id_sa11794" initialAmount="0.0" charge="0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11794</celldesigner:proteinReference>
+<celldesigner:name>TRPV1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="diglyceride" id="s_id_sa11733" metaid="s_id_sa11733" initialAmount="0.0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: diglyceride
+Synonyms: a diacylglycerol, di-O-acylglycerols, Diacylglycerol, diacylglycerols, Diglyceride, diglycerides
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>innerSurface</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>diglyceride</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A18035"/>
+</rdf:Bag>
+</bqbiol:is>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="CAMK4" id="s_id_sa11857" metaid="s_id_sa11857" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11857</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>CAMK4</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="RAP1A" id="s_id_sa11808" metaid="s_id_sa11808" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11808</celldesigner:proteinReference>
+<celldesigner:name>RAP1A</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="DRD1" id="s_id_sa11696" metaid="s_id_sa11696" initialAmount="0.0" charge="0" compartment="s_id_ca169"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: DRD1
+Name: dopamine receptor D1
+HGNC_ID: 3020
+EntrezGene_ID: 1812
+RefSeq_ID: NM_000794
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11696</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>DRD1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:DRD1"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_000794"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:1812"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000184845"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:3020"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P21728"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="degraded_space_CTNNB1" id="s_id_sa11740" metaid="s_id_sa11740" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>DEGRADED</celldesigner:class>
+<celldesigner:name>degraded_space_CTNNB1</celldesigner:name>
+</celldesigner:speciesIdentity>
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+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Calcineurin" id="s_id_csa1904" metaid="s_id_csa1904" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>Calcineurin</celldesigner:name>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
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+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0004723"/>
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+<celldesigner:name>AHCYL:ITPR3</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="UPS" id="s_id_sa11719" metaid="s_id_sa11719" initialAmount="0.0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: proteasome complex
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>UPS</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqmodel:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0000502"/>
+</rdf:Bag>
+</bqmodel:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="cofilin" id="s_id_csa1899" metaid="s_id_csa1899" initialAmount="0.0" charge="0" compartment="s_id_ca169"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>cofilin</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="AMP" id="s_id_sa11844" metaid="s_id_sa11844" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>AMP</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="UPS" id="s_id_sa11732" metaid="s_id_sa11732" initialAmount="0.0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: proteasome complex
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+
+A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>UPS</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqmodel:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0000502"/>
+</rdf:Bag>
+</bqmodel:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PKA" id="s_id_csa1901" metaid="s_id_csa1901" initialAmount="0.0" compartment="s_id_ca168"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: cAMP-dependent protein kinase complex
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 7
+
+An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>PKA</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0005952"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="RASGRF1" id="s_id_sa11822" metaid="s_id_sa11822" initialAmount="0.0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11822</celldesigner:proteinReference>
+<celldesigner:name>RASGRF1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="AHCYL1:ITPR3" id="s_id_csa1895" metaid="s_id_csa1895" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>AHCYL1:ITPR3</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PENK" id="s_id_sa11858" metaid="s_id_sa11858" initialAmount="0.0" compartment="default"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11858</celldesigner:proteinReference>
+<celldesigner:name>PENK</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="LRRK2" id="s_id_sa11718" metaid="s_id_sa11718" initialAmount="0.0" compartment="s_id_ca168"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: LRRK2
+Name: leucine rich repeat kinase 2
+Previous Symbols: PARK8
+Synonyms: DKFZp434H2111, FLJ45829, RIPK7, ROCO2
+HGNC_ID: 18618
+EntrezGene_ID: 120892
+RefSeq_ID: XM_058513
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11718</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>LRRK2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:120892"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q5S007"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:18618"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:XM_058513"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000188906"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:LRRK2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="AMPA_space_receptor" id="s_id_csa1907" metaid="s_id_csa1907" initialAmount="0.0" charge="0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: AMPA glutamate receptor complex
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 3
+Charge: 0
+
+An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. The AMPA receptors mediate fast synaptic transmission in the CNS and are composed of subunits GluR1-4, products from separate genes. These subunits have an extracellular N-terminus and an intracellular C-terminus.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>AMPA_space_receptor</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0032281"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="L_minus_glutamate" id="s_id_sa11872" metaid="s_id_sa11872" initialAmount="0.0" charge="0" compartment="default"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: L-glutamic acid
+Synonyms: (S)-2-aminopentanedioic acid, (S)-glutamic acid, acide glutamique, acido glutamico, acidum glutamicum, E, Glu, Glutamate, GLUTAMIC ACID, glutamic acid, L-Glu, L-Glutamic acid, L-Glutaminic acid, L-Glutaminsaeure, Recon metabolite: glu_L
+Reactome_ID: REACT_13119.1
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+VMH database: <a href="http://vmh.uni.lu/#metabolite/glu_L">glu_L</a></body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>L_minus_glutamate</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A16015"/>
+</rdf:Bag>
+</bqbiol:is>
+<bqbiol:hasVersion>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:reactome:REACT_13119.1"/>
+</rdf:Bag>
+</bqbiol:hasVersion>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="inclusion" id="s_id_csa1902" metaid="s_id_csa1902" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>inclusion</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="filamentous_space_actin" id="s_id_csa1898" metaid="s_id_csa1898" initialAmount="0.0" charge="0" compartment="s_id_ca169"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: filamentous actin
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 7
+Charge: 0
+
+A two-stranded helical polymer of the protein actin.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>filamentous_space_actin</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0031941"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="LRRK2" id="s_id_sa11726" metaid="s_id_sa11726" initialAmount="0.0" charge="0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: LRRK2
+Name: leucine rich repeat kinase 2
+Previous Symbols: PARK8
+Synonyms: DKFZp434H2111, FLJ45829, RIPK7, ROCO2
+HGNC_ID: 18618
+EntrezGene_ID: 120892
+RefSeq_ID: XM_058513
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11726</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>LRRK2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:120892"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q5S007"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:18618"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:XM_058513"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000188906"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:LRRK2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="protein_space_translation" id="s_id_sa11705" metaid="s_id_sa11705" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: regulation of cytoplasmic translational elongation
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+Any process that modulates the frequency, rate or extent of cytoplasmic translational elongation.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>protein_space_translation</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A1900247"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="K_plus_" id="s_id_sa11721" metaid="s_id_sa11721" initialAmount="0.0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>ION</celldesigner:class>
+<celldesigner:name>K_plus_</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="CTNNB1" id="s_id_sa11720" metaid="s_id_sa11720" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: CTNNB1
+Name: catenin beta 1
+Previous Symbols: CTNNB
+Synonyms: armadillo, beta-catenin
+HGNC_ID: 2514
+EntrezGene_ID: 1499
+RefSeq_ID: NM_001098210
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11720</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>CTNNB1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:CTNNB1"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:2514"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_001098210"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000168036"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P35222"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:1499"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="CHRM4" id="s_id_sa11831" metaid="s_id_sa11831" initialAmount="0.0" charge="0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11831</celldesigner:proteinReference>
+<celldesigner:name>CHRM4</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PKA_space_catalytic_space_subunit" id="s_id_csa1915" metaid="s_id_csa1915" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>PKA_space_catalytic_space_subunit</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ec-code:2.7.11.11"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="ARPP21" id="s_id_sa11841" metaid="s_id_sa11841" initialAmount="0.0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11841</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>ARPP21</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="dendritic_space_spine_space_development" id="s_id_sa11725" metaid="s_id_sa11725" initialAmount="0.0" charge="0" compartment="s_id_ca169"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: dendritic spine development
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+The process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>dendritic_space_spine_space_development</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0060996"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="BTRC" id="s_id_sa11697" metaid="s_id_sa11697" initialAmount="0.0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: BTRC
+Name: beta-transducin repeat containing E3 ubiquitin protein ligase
+Synonyms: FBXW1A, Fwd1, bTrCP, bTrCP1, beta-TrCP1, betaTrCP
+HGNC_ID: 1144
+EntrezGene_ID: 8945
+RefSeq_ID: NM_033637
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11697</celldesigner:proteinReference>
+<celldesigner:name>BTRC</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000166167"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q9Y297"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:1144"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:BTRC"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:8945"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_033637"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="VIM" id="s_id_sa11737" metaid="s_id_sa11737" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: VIM
+Name: vimentin
+HGNC_ID: 12692
+EntrezGene_ID: 7431
+RefSeq_ID: NM_003380
+SemanticZoomLevelVisibility: 3
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11737</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>VIM</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:7431"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_003380"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000026025"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P08670"/>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:12692"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:VIM"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PRKCD" id="s_id_sa11723" metaid="s_id_sa11723" initialAmount="0.0" charge="0" compartment="s_id_ca169"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: PRKCD
+Name: protein kinase C delta
+HGNC_ID: 9399
+EntrezGene_ID: 5580
+RefSeq_ID: NM_001316327
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11723</celldesigner:proteinReference>
+<celldesigner:name>PRKCD</celldesigner:name>
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+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:PRKCD"/>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q05655"/>
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+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000163932"/>
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+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:9399"/>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_001316327"/>
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+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PPP1R1B" id="s_id_sa11779" metaid="s_id_sa11779" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11779</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs2" state="phosphorylated"> </celldesigner:modification>
+<celldesigner:modification residue="rs3" state="phosphorylated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>PPP1R1B</celldesigner:name>
+</celldesigner:speciesIdentity>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PP2C" id="s_id_sa11834" metaid="s_id_sa11834" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11834</celldesigner:proteinReference>
+<celldesigner:name>PP2C</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR015655"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="degraded_space_EEF2K" id="s_id_sa11756" metaid="s_id_sa11756" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>DEGRADED</celldesigner:class>
+<celldesigner:name>degraded_space_EEF2K</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Rap1_space_activating" id="s_id_csa1917" metaid="s_id_csa1917" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>Rap1_space_activating</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR000331"/>
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+</bqbiol:isEncodedBy>
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+</rdf:RDF>
+</annotation>
+</species>
+<species name="NTRK2" id="s_id_sa11700" metaid="s_id_sa11700" initialAmount="0.0" charge="0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: NTRK2
+Name: neurotrophic receptor tyrosine kinase 2
+Synonyms: TRKB
+HGNC_ID: 8032
+EntrezGene_ID: 4915
+RefSeq_ID: XM_005252001
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11700</celldesigner:proteinReference>
+<celldesigner:name>NTRK2</celldesigner:name>
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+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q16620"/>
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+<bqbiol:isDescribedBy>
+<rdf:Bag>
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+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:4915"/>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:8032"/>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:NTRK2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000148053"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="long_minus_term_space_memory" id="s_id_sa11809" metaid="s_id_sa11809" initialAmount="0.0" charge="0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>long_minus_term_space_memory</celldesigner:name>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0007616"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PP2A" id="s_id_csa1911" metaid="s_id_csa1911" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>PP2A</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:mesh:D054648"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="mitochondrial_space_motility" id="s_id_sa11729" metaid="s_id_sa11729" initialAmount="0.0" charge="0" compartment="s_id_ca168"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: mitochondrion transport along microtubule
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+The directed movement of a mitochondrion along a microtubule, mediated by motor proteins.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>mitochondrial_space_motility</celldesigner:name>
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+<rdf:Description rdf:about="#">
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+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0047497"/>
+</rdf:Bag>
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+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Ca2_plus_" id="s_id_sa11788" metaid="s_id_sa11788" initialAmount="0.0" compartment="s_id_ca169"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>ION</celldesigner:class>
+<celldesigner:name>Ca2_plus_</celldesigner:name>
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+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="synaptic_space_plasticity" id="s_id_sa11848" metaid="s_id_sa11848" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>synaptic_space_plasticity</celldesigner:name>
+</celldesigner:speciesIdentity>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0031915"/>
+</rdf:Bag>
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+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="small_minus_conductance_space_KCa_space_channels" id="s_id_csa1924" metaid="s_id_csa1924" initialAmount="0.0" charge="0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>small_minus_conductance_space_KCa_space_channels</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isPartOf>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR015449"/>
+</rdf:Bag>
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+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="ITPR2" id="s_id_sa11755" metaid="s_id_sa11755" initialAmount="0.0" charge="0" compartment="s_id_ca187"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: ITPR2
+Name: inositol 1,4,5-trisphosphate receptor type 2
+Synonyms: CFAP48, IP3R2
+HGNC_ID: 6181
+EntrezGene_ID: 3709
+RefSeq_ID: NM_002223
+SemanticZoomLevelVisibility: 7
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11755</celldesigner:proteinReference>
+<celldesigner:name>ITPR2</celldesigner:name>
+</celldesigner:speciesIdentity>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_002223"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q14571"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ITPR2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:3709"/>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:6181"/>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000123104"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PP2A" id="s_id_csa1943" metaid="s_id_csa1943" initialAmount="0.0" charge="0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>PP2A</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="RGS4" id="s_id_sa11702" metaid="s_id_sa11702" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: RGS4
+Name: regulator of G-protein signaling 4
+Previous Symbols: SCZD9
+HGNC_ID: 10000
+EntrezGene_ID: 5999
+RefSeq_ID: NM_005613
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11702</celldesigner:proteinReference>
+<celldesigner:name>RGS4</celldesigner:name>
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+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_005613"/>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:5999"/>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
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+<rdf:li rdf:resource="urn:miriam:uniprot:P49798"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000117152"/>
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+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:10000"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:RGS4"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PDYN" id="s_id_sa11827" metaid="s_id_sa11827" initialAmount="0.0" charge="0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>RNA</celldesigner:class>
+<celldesigner:rnaReference>r_s_id_sa11827</celldesigner:rnaReference>
+<celldesigner:name>PDYN</celldesigner:name>
+</celldesigner:speciesIdentity>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="GRM1" id="s_id_sa11766" metaid="s_id_sa11766" initialAmount="0.0" charge="0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11766</celldesigner:proteinReference>
+<celldesigner:name>GRM1</celldesigner:name>
+</celldesigner:speciesIdentity>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="FOS" id="s_id_sa11824" metaid="s_id_sa11824" initialAmount="0.0" charge="0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>RNA</celldesigner:class>
+<celldesigner:rnaReference>r_s_id_sa11824</celldesigner:rnaReference>
+<celldesigner:name>FOS</celldesigner:name>
+</celldesigner:speciesIdentity>
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+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PIP2" id="s_id_sa11759" metaid="s_id_sa11759" initialAmount="0.0" compartment="s_id_ca188"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate
+Synonyms: 1, 2-Diacyl-sn-glycero-3-phospho-(1'-myo-inositol-4', 5'-bisphosphate), 1-Phosphatidyl-1D-myo-inositol 4, 5-bisphosphate, 1-Phosphatidyl-1D-myo-inositol 4, 5-bisphosphate, 1-Phosphatidyl-D-myo-inositol 4, 5-bisphosphate, 1-Phosphatidyl-D-myo-inositol 4, 5-bisphosphate, Phosphatidyl-myo-inositol 4, 5-bisphosphate, Phosphatidyl-myo-inositol 4, 5-bisphosphate, Phosphatidylinositol-4, 5-bisphosphate, Phosphatidylinositol-4, 5-bisphosphate, PIP2, PIPP, PtsIns(4, 5)P2, PtsIns-4, 5-P2
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>innerSurface</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>PIP2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A18348"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PKA_space_catalytic_space_subunit" id="s_id_csa1892" metaid="s_id_csa1892" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>PKA_space_catalytic_space_subunit</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ec-code:2.7.11.11"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="CNR1" id="s_id_sa11793" metaid="s_id_sa11793" initialAmount="0.0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11793</celldesigner:proteinReference>
+<celldesigner:name>CNR1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="GNAQ" id="s_id_sa11767" metaid="s_id_sa11767" initialAmount="0.0" charge="0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11767</celldesigner:proteinReference>
+<celldesigner:name>GNAQ</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR000654"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="ATP" id="s_id_sa11839" metaid="s_id_sa11839" initialAmount="0.0" charge="0" compartment="s_id_ca169"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: ATP
+Synonyms: Adenosine 5'-triphosphate, Adenosine triphosphate, ADENOSINE-5'-TRIPHOSPHATE, Adephos, Adetol, Adynol, Atipi, ATP, Atriphos, Cardenosine, Fosfobion, Glucobasin, H4atp, Myotriphos, Triadenyl, Triphosphaden, Recon metabolite: atp
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+VMH database: <a href="http://vmh.uni.lu/#metabolite/atp">atp</a></body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>ATP</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15422"/>
+</rdf:Bag>
+</bqbiol:is>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="PDEs" id="s_id_sa11845" metaid="s_id_sa11845" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11845</celldesigner:proteinReference>
+<celldesigner:name>PDEs</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR023088"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="cofilin" id="s_id_csa1894" metaid="s_id_csa1894" initialAmount="0.0" charge="0" compartment="s_id_ca169"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>cofilin</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="TF_space_ELK1" id="s_id_csa1930" metaid="s_id_csa1930" initialAmount="0.0" charge="0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>TF_space_ELK1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="HTR4" id="s_id_sa11789" metaid="s_id_sa11789" initialAmount="0.0" charge="0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11789</celldesigner:proteinReference>
+<celldesigner:name>HTR4</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="GNAL" id="s_id_sa11741" metaid="s_id_sa11741" initialAmount="0.0" charge="0" compartment="s_id_ca169"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: GNAL
+Name: G protein subunit alpha L
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11741</celldesigner:proteinReference>
+<celldesigner:name>GNAL</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR000367"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="dendrite_space_extension" id="s_id_sa11699" metaid="s_id_sa11699" initialAmount="0.0" charge="0" compartment="s_id_ca168"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Name: dendrite extension
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+Long distance growth of a single dendrite involved in cellular development.</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>dendrite_space_extension</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0097484"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="CaMKII" id="s_id_csa1919" metaid="s_id_csa1919" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>CaMKII</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0005954"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="OPRM1" id="s_id_sa11792" metaid="s_id_sa11792" initialAmount="0.0" charge="0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11792</celldesigner:proteinReference>
+<celldesigner:name>OPRM1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="L_minus_type_space_calcium_space_channel_BR_Cav1.3_space_and_space_Cav1.2" id="s_id_csa1923" metaid="s_id_csa1923" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>outerSurface</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>L_minus_type_space_calcium_space_channel_BR_Cav1.3_space_and_space_Cav1.2</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR005446"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="GNAS" id="s_id_sa11763" metaid="s_id_sa11763" initialAmount="0.0" charge="0" compartment="s_id_ca169"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: GNAS
+Name: GNAS complex locus
+Previous Symbols: GNAS1
+Synonyms: GNASXL, GPSA, NESP, NESP55, SCG6, SgVI
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11763</celldesigner:proteinReference>
+<celldesigner:name>GNAS</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR000367"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="Calcineurin" id="s_id_csa1940" metaid="s_id_csa1940" initialAmount="0.0" charge="0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>Calcineurin</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0004723"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:mesh:D019703"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="EEF2K" id="s_id_sa11748" metaid="s_id_sa11748" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: EEF2K
+Name: eukaryotic elongation factor 2 kinase
+Synonyms: eEF-2K
+HGNC_ID: 24615
+EntrezGene_ID: 29904
+RefSeq_ID: NM_013302
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11748</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+<celldesigner:modification residue="rs1" state="phosphorylated"> </celldesigner:modification>
+<celldesigner:modification residue="rs2" state="ubiquitinated"> </celldesigner:modification>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>EEF2K</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:24615"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_013302"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:EEF2K"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:O00418"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000103319"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:29904"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="CDK5" id="s_id_sa11774" metaid="s_id_sa11774" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11774</celldesigner:proteinReference>
+<celldesigner:name>CDK5</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="s3264" id="s_id_sa11758" metaid="s_id_sa11758" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>DEGRADED</celldesigner:class>
+<celldesigner:name>s3264</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="MAP2" id="s_id_sa11695" metaid="s_id_sa11695" initialAmount="0.0" charge="0" compartment="s_id_ca168"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: MAP2
+Name: microtubule associated protein 2
+Synonyms: MAP2A, MAP2B, MAP2C
+HGNC_ID: 6839
+EntrezGene_ID: 4133
+RefSeq_ID: NM_001039538
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11695</celldesigner:proteinReference>
+<celldesigner:name>MAP2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_001039538"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P11137"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000078018"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:MAP2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:4133"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:6839"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="NMDA_space_receptor" id="s_id_csa1905" metaid="s_id_csa1905" initialAmount="0.0" charge="0" compartment="s_id_ca188"><annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>NMDA_space_receptor</celldesigner:name>
+<celldesigner:hypothetical>true</celldesigner:hypothetical>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0017146"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="calpain_minus_1" id="s_id_csa1912" metaid="s_id_csa1912" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>calpain_minus_1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:interpro:IPR029643"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="MAPK_space_pathway" id="s_id_sa11785" metaid="s_id_sa11785" initialAmount="0.0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PHENOTYPE</celldesigner:class>
+<celldesigner:name>MAPK_space_pathway</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isEncodedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:obo.go:GO%3A0000165"/>
+</rdf:Bag>
+</bqbiol:isEncodedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="DUSP1" id="s_id_sa11825" metaid="s_id_sa11825" initialAmount="0.0" charge="0" compartment="s_id_ca182"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>RNA</celldesigner:class>
+<celldesigner:rnaReference>r_s_id_sa11825</celldesigner:rnaReference>
+<celldesigner:name>DUSP1</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="CaMKII" id="s_id_csa1936" metaid="s_id_csa1936" initialAmount="0.0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:state>
+<celldesigner:listOfStructuralStates>
+<celldesigner:structuralState structuralState="phosphorylated">phosphorylated</celldesigner:structuralState></celldesigner:listOfStructuralStates>
+</celldesigner:state>
+<celldesigner:name>CaMKII</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="RASGRP2" id="s_id_sa11787" metaid="s_id_sa11787" initialAmount="0.0" charge="0" compartment="s_id_ca173"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: RASGRP2
+Name: RAS guanyl releasing protein 2
+Synonyms: CALDAG-GEFI
+HGNC_ID: 9879
+EntrezGene_ID: 10235
+RefSeq_ID: NM_153819
+SemanticZoomLevelVisibility: 4
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11787</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>RASGRP2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_153819"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:RASGRP2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:9879"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q7LDG7"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000068831"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:10235"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="LRRK2" id="s_id_sa11710" metaid="s_id_sa11710" initialAmount="0.0" charge="0" compartment="s_id_ca168"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: LRRK2
+Name: leucine rich repeat kinase 2
+Previous Symbols: PARK8
+Synonyms: DKFZp434H2111, FLJ45829, RIPK7, ROCO2
+HGNC_ID: 18618
+EntrezGene_ID: 120892
+RefSeq_ID: XM_058513
+SemanticZoomLevelVisibility: 6
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11710</celldesigner:proteinReference>
+<celldesigner:state>
+<celldesigner:listOfStructuralStates>
+<celldesigner:structuralState structuralState="mutated R1441C">mutated R1441C</celldesigner:structuralState></celldesigner:listOfStructuralStates>
+<celldesigner:listOfModifications>
+</celldesigner:listOfModifications>
+</celldesigner:state>
+<celldesigner:name>LRRK2</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:120892"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q5S007"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:18618"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:XM_058513"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000188906"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:LRRK2"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="ITPR3" id="s_id_sa11716" metaid="s_id_sa11716" initialAmount="0.0" charge="0" compartment="s_id_ca187"><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title/></head><body>Symbol: ITPR3
+Name: inositol 1,4,5-trisphosphate receptor type 3
+Synonyms: IP3R3
+HGNC_ID: 6182
+EntrezGene_ID: 3710
+RefSeq_ID: NM_002224
+SemanticZoomLevelVisibility: 7
+TransparencyZoomLevelVisibility: 0
+Charge: 0
+
+</body></html></notes>
+<annotation><celldesigner:extension><celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>p_s_id_sa11716</celldesigner:proteinReference>
+<celldesigner:name>ITPR3</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:refseq:NM_002224"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ITPR3"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q14573"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:hgnc:6182"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ncbigene:3710"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000096433"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="s391" id="s_id_sa11775" metaid="s_id_sa11775" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>DEGRADED</celldesigner:class>
+<celldesigner:name>s391</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="serotonin" id="s_id_sa11791" metaid="s_id_sa11791" initialAmount="0.0" compartment="default"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
+<celldesigner:name>serotonin</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+<species name="LRRK2:PKAR2B:PKAC" id="s_id_csa1888" metaid="s_id_csa1888" initialAmount="0.0" charge="0" compartment="s_id_ca173"><annotation><celldesigner:extension><celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment><celldesigner:speciesIdentity><celldesigner:class>COMPLEX</celldesigner:class>
+<celldesigner:name>LRRK2:PKAR2B:PKAC</celldesigner:name>
+</celldesigner:speciesIdentity>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
+</listOfSpecies>
+<listOfReactions>
+<reaction metaid="re5811" id="re5811" name="" reversible="false" >
+<annotation>
+<celldesigner:extension>
+<celldesigner:reactionType>STATE_TRANSITION</celldesigner:reactionType><celldesigner:baseReactants>
+<celldesigner:baseReactant species="s_id_sa11737" alias="sa11737" >
+<celldesigner:linkAnchor position="N"/>
+</celldesigner:baseReactant>
+</celldesigner:baseReactants>
+<celldesigner:baseProducts>
+<celldesigner:baseProduct species="s_id_sa11758" alias="sa11758" >
+<celldesigner:linkAnchor position="S"/>
+</celldesigner:baseProduct>
+</celldesigner:baseProducts>
+<celldesigner:listOfReactantLinks>
+</celldesigner:listOfReactantLinks>
+<celldesigner:listOfProductLinks>
+</celldesigner:listOfProductLinks>
+<celldesigner:connectScheme connectPolicy="direct" rectangleIndex="0" >
+<celldesigner:listOfLineDirection>
+<celldesigner:lineDirection index="0" value="unknown"/>
+</celldesigner:listOfLineDirection>
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+</celldesigner:extension>
+</annotation>
+</speciesReference>
+</listOfProducts>
+</reaction>
+<reaction metaid="re5908" id="re5908" name="" reversible="false" >
+<annotation>
+<celldesigner:extension>
+<celldesigner:reactionType>POSITIVE_INFLUENCE</celldesigner:reactionType><celldesigner:baseReactants>
+<celldesigner:baseReactant species="s_id_csa1931" alias="csa1931" >
+<celldesigner:linkAnchor position="N"/>
+</celldesigner:baseReactant>
+</celldesigner:baseReactants>
+<celldesigner:baseProducts>
+<celldesigner:baseProduct species="s_id_csa1923" alias="csa1923" >
+<celldesigner:linkAnchor position="SSW"/>
+</celldesigner:baseProduct>
+</celldesigner:baseProducts>
+<celldesigner:listOfReactantLinks>
+</celldesigner:listOfReactantLinks>
+<celldesigner:listOfProductLinks>
+</celldesigner:listOfProductLinks>
+<celldesigner:connectScheme connectPolicy="direct" rectangleIndex="0" >
+<celldesigner:listOfLineDirection>
+<celldesigner:lineDirection index="0" value="unknown"/>
+</celldesigner:listOfLineDirection>
+</celldesigner:connectScheme>
+<celldesigner:listOfModification>
+</celldesigner:listOfModification>
+<celldesigner:line width="1.0" color="FF000000" type="Straight" />
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#">
+<bqbiol:isDescribedBy>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:pubmed:17408758"/>
+</rdf:Bag>
+</bqbiol:isDescribedBy>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+<listOfReactants>
+<speciesReference species="s_id_csa1931" >
+<annotation>
+<celldesigner:extension>
+<celldesigner:alias>csa1931</celldesigner:alias>
+</celldesigner:extension>
+</annotation>
+</speciesReference>
+</listOfReactants>
+<listOfProducts>
+<speciesReference species="s_id_csa1923" >
+<annotation>
+<celldesigner:extension>
+<celldesigner:alias>csa1923</celldesigner:alias>
+</celldesigner:extension>
+</annotation>
+</speciesReference>
+</listOfProducts>
+</reaction>
+</listOfReactions>
+<notes>For information on content, functionalities and referencing the Parkinson's disease map, click <a href="http://pdmap.uni.lu" target="_blank">here</a> .</notes></model></sbml>
\ No newline at end of file
diff --git a/converter-SBGNML/testFiles/cellDesigner/sample.xml b/converter-SBGNML/testFiles/cellDesigner/sample.xml
index 9bd01a8dbcb66032381ec959ff0ee965f319df67..fa7cea1a03a06e97df442b9d66a235398d14d097 100644
--- a/converter-SBGNML/testFiles/cellDesigner/sample.xml
+++ b/converter-SBGNML/testFiles/cellDesigner/sample.xml
@@ -834,64 +834,6 @@ Name: Carney complex, multiple neoplasia and lentiginosis
Description: RecName: Full=Sodium/calcium exchanger 1; AltName: Full=Na(+)/Ca(2+)-exchange protein 1; Flags: Precursor;
Previous Symbols:
Synonyms: CNC, NCX1
-<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-<rdf:Description rdf:about="#s15">
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:refseq:NP_066920.1"/></rdf:Bag>
-</bqbiol:hasVersion>
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:ncbigene:6546"/>
-</rdf:Bag>
-</bqbiol:hasVersion>
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:refseq:NP_001106273.1"/>
-</rdf:Bag>
-</bqbiol:hasVersion>
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:kegg.genes:hsa:6546"/>
-</rdf:Bag>
-</bqbiol:hasVersion>
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:reactome:REACT_20130"/>
-</rdf:Bag>
-</bqbiol:hasVersion>
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:pharmgkb.pathways:PA314"/>
-</rdf:Bag>
-</bqbiol:hasVersion>
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:refseq:NP_001106272.1"/>
-</rdf:Bag>
-</bqbiol:hasVersion>
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:kegg.genes:hsa%3A6546"/>
-</rdf:Bag>
-</bqbiol:hasVersion>
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:refseq:NP_001239553.1"/>
-</rdf:Bag>
-</bqbiol:hasVersion>
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:hgnc:2141"/>
-</rdf:Bag>
-</bqbiol:hasVersion>
-<bqbiol:hasVersion>
-<rdf:Bag>
-<rdf:li rdf:resource="urn:miriam:refseq:NP_001106271.1"/>
-</rdf:Bag>
-</bqbiol:hasVersion>
-</rdf:Description>
-</rdf:RDF>
</body>
</html>
</notes>
diff --git a/model/src/main/java/lcsb/mapviewer/modelutils/map/ElementUtils.java b/model/src/main/java/lcsb/mapviewer/modelutils/map/ElementUtils.java
index 91048a02161441ee19f5607695b93fa6cbcd83d9..8632b77cf002b32027853b22d7d99fd56f28c505 100644
--- a/model/src/main/java/lcsb/mapviewer/modelutils/map/ElementUtils.java
+++ b/model/src/main/java/lcsb/mapviewer/modelutils/map/ElementUtils.java
@@ -14,6 +14,7 @@ import org.reflections.Reflections;
import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.model.map.BioEntity;
import lcsb.mapviewer.model.map.reaction.Reaction;
+import lcsb.mapviewer.model.map.reaction.ReactionNode;
import lcsb.mapviewer.model.map.species.Element;
/**
@@ -257,4 +258,8 @@ public final class ElementUtils {
ElementUtils.reactionClasses = reactionClasses;
}
+ public String getElementTag(ReactionNode node) {
+ return "[" + node.getClass().getSimpleName() + "]" + getElementTag(node.getElement());
+ }
+
}