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Commit d77743c1 authored by Piotr Gawron's avatar Piotr Gawron
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Merge branch '172-session-expiry-notification' into 'master' 

Resolve "Session expiry notification"

Closes #172

See merge request !421
parents 1bdd52fc 5204e860
Pipeline #6565 failed with stage
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commons/src/main/java/lcsb/mapviewer/common/Configuration.java
View file @ d77743c1
......@@ -100,6 +100,11 @@ public final class Configuration {
*/
public static final String ANONYMOUS_LOGIN = "anonymous";
/**
* Max session length in seconds.
*/
private static int sessionLength = 60 * 120;
/**
* Should the application cache be turned on.
*/
......@@ -425,4 +430,12 @@ public final class Configuration {
return result;
}
public static int getSessionLength() {
return sessionLength;
}
public static void setSessionLength(int sessionLength) {
Configuration.sessionLength = sessionLength;
}
}
frontend-js/src/main/css/global.css
View file @ d77743c1
......@@ -20,6 +20,17 @@
padding-left: 15px;
}
.minerva-header-right-menu {
height: 36px;
line-height: 35px;
font-size: 13px;
font-weight: 900;
color: #ffffff;
display: inline;
width: auto;
float: right
}
.minerva-header a:hover {
background-color: #000000;
transition: background-color 0.4s ease-in-out 0s;
......@@ -97,14 +108,14 @@
to(#13ACE0));
}
.headerHideDivButton {
.minerva-header-hide-div-button {
display: inline;
width: auto;
height: 36px;
float: left
}
.headerHideButton {
.minerva-header-hide-button {
color: #FFFFFF;
height: 36px;
line-height: 36px;
......@@ -118,12 +129,12 @@
transition: background-color 0.4s ease-in-out 0s;
}
.headerHideButton:hover {
.minerva-header-hide-button:hover {
background-color: #01536D;
transition: background-color 0.4s ease-in-out 0s;
}
.headerTextBold {
.minerva-version-div {
display: inline;
width: auto;
height: 36px;
......@@ -137,6 +148,32 @@
border-right: 1px solid #9DE1F8;
}
.minerva-session-expire {
background: #EE0000;
display: inline;
width: auto;
height: 36px;
float: left;
line-height: 34px;
padding: 0 0 0 17px;
color: #FFFFFF;
font-weight: 900;
font-size: 13px;
text-align: center;
border-right: 1px solid #9DE1F8;
}
.minerva-extend-session-button {
background-color: #CC0000;
margin-left: 10px;
border: 0px;
}
.minerva-extend-session-button:hover {
background-color: #880000;
transition: background-color 0.4s ease-in-out 0s;
}
.minerva-legend {
position: absolute;
bottom: 10px;
......
frontend-js/src/main/js/ConfigurationType.js
View file @ d77743c1
......@@ -15,6 +15,7 @@ var ConfigurationType = {
REQUEST_ACCOUNT_EMAIL: "REQUEST_ACCOUNT_EMAIL",
REQUEST_ACCOUNT_DEFAULT_CONTENT: "REQUEST_ACCOUNT_DEFAULT_CONTENT",
SIMPLE_COLOR_VAL: "SIMPLE_COLOR_VAL",
SESSION_LENGTH: "SESSION_LENGTH",
SHOW_ELEMENT_ABBREVIATION: "SHOW_ELEMENT_ABBREVIATION",
SHOW_ELEMENT_ANNOTATIONS: "SHOW_ELEMENT_ANNOTATIONS",
SHOW_ELEMENT_CHARGE: "SHOW_ELEMENT_CHARGE",
......
frontend-js/src/main/js/ServerConnector.js
View file @ d77743c1
......@@ -933,6 +933,14 @@ ServerConnector.getConfiguration = function () {
}
};
/**
*
* @returns {Promise}
*/
ServerConnector.extendSession = function () {
return this.sendGetRequest(this.getConfigurationUrl())
};
ServerConnector.getConfigurationParam = function (paramId) {
if (paramId === undefined) {
return Promise.reject(new Error("Unknown param type"));
......
frontend-js/src/main/js/SessionData.js
View file @ d77743c1
......@@ -15,12 +15,33 @@ var logger = require('./logger');
* @constructor
*/
function SessionData(project) {
var self = this;
if (project === undefined) {
throw new Error("Project must be passed as an argument");
}
this.setProject(project);
self.setProject(project);
ServerConnector.addListener("onDataLoadStart", function () {
self.setLastRequestTimeStamp(Math.floor(Date.now() / 1000));
});
}
/**
*
* @param {number} timestamp time stamp in seconds
*/
SessionData.prototype.setLastRequestTimeStamp = function (timestamp) {
this._lastRequestTimeStamp = timestamp;
};
/**
*
* @returns {number} time stamp in seconds
*/
SessionData.prototype.getLastRequestTimeStamp = function () {
return this._lastRequestTimeStamp;
};
/**
*
* @param {Project} project
......
frontend-js/src/main/js/gui/OverviewDialog.js
View file @ d77743c1
......@@ -36,7 +36,7 @@ OverviewDialog.prototype.constructor = OverviewDialog;
/**
*
* @param {number} overviewImageId
* @param {number} [overviewImageId]
*/
OverviewDialog.prototype.showOverview = function (overviewImageId) {
var self = this;
......
frontend-js/src/main/js/gui/topMenu/TopMenu.js
View file @ d77743c1
......@@ -5,11 +5,13 @@ var Promise = require("bluebird");
/* exported logger */
var AbstractGuiElement = require('../AbstractGuiElement');
var ConfigurationType = require('../../ConfigurationType');
var GuiConnector = require('../../GuiConnector');
var OverviewDialog = require('../OverviewDialog');
var PanelControlElementType = require('../PanelControlElementType');
var Functions = require('../../Functions');
// noinspection JSUnusedLocalSymbols
var logger = require('../../logger');
/**
......@@ -30,6 +32,12 @@ function TopMenu(params) {
var self = this;
self._createGui();
self._cronFunction = function () {
return self.checkIfSessionIsGoingToExpire();
};
setInterval(self._cronFunction, 1000);
}
TopMenu.prototype = Object.create(AbstractGuiElement.prototype);
......@@ -42,43 +50,43 @@ TopMenu.prototype.constructor = TopMenu;
TopMenu.prototype._createGui = function () {
var self = this;
var overviewDialogDiv = Functions.createElement({
type: "div",
name: "overviewDialog"
});
var overviewDialogDiv = Functions.createElement({type: "div"});
self.getElement().appendChild(overviewDialogDiv);
self.setControlElement(PanelControlElementType.OVERVIEW_DIALOG_DIV, overviewDialogDiv);
var hideButtonDiv = Functions.createElement({
type: "div",
className: "headerHideDivButton"
className: "minerva-header-hide-div-button"
});
self.getElement().appendChild(hideButtonDiv);
var hideButton = Functions.createElement({
type: "button",
className: "headerHideButton",
name: "hideButton"
className: "minerva-header-hide-button"
});
hideButtonDiv.appendChild(hideButton);
self.setControlElement(PanelControlElementType.MENU_HIDE_LEFT_PANEL_BUTTON, hideButton);
var hideButtonIcon = Functions.createElement({
type: "i",
className: "fa fa-chevron-left",
name: "hideButtonIcon"
className: "fa fa-chevron-left"
});
hideButton.appendChild(hideButtonIcon);
self.setControlElement(PanelControlElementType.MENU_HIDE_LEFT_PANEL_BUTTON_ICON, hideButtonIcon);
var versionDiv = Functions.createElement({
type: "div",
className: "headerTextBold",
name: "versionDiv"
className: "minerva-version-div"
});
self.getElement().appendChild(versionDiv);
self.setControlElement(PanelControlElementType.MENU_VERSION_DIV, versionDiv);
self.getElement().appendChild(Functions.createElement({
type: "div",
className: "minerva-session-expire",
style: "display:none;"
}));
var showOverviewDiv = Functions.createElement({
type: "div",
style: "float: left;"
......@@ -88,7 +96,6 @@ TopMenu.prototype._createGui = function () {
var showOverviewButton = Functions.createElement({
type: "button",
className: "minerva-overview-button",
name: "showOverviewButton",
content: "<i class='fa fa-sitemap' style='font-size:18px; font-weight:400; padding-right:10px;'></i><span >SHOW OVERVIEW</span>",
style: "display:none",
xss: false
......@@ -98,7 +105,7 @@ TopMenu.prototype._createGui = function () {
var rightHeaderMenuDiv = Functions.createElement({
type: "div",
className: "rightHeaderMenu"
className: "minerva-header-right-menu"
});
self.getElement().appendChild(rightHeaderMenuDiv);
......@@ -110,8 +117,7 @@ TopMenu.prototype._createGui = function () {
var legendCheckbox = Functions.createElement({
type: "input",
inputType: "checkbox",
name: "legendCheckbox"
inputType: "checkbox"
});
div4checkboxes.appendChild(legendCheckbox);
self.setControlElement(PanelControlElementType.MENU_LEGEND_CHECKBOX, legendCheckbox);
......@@ -137,7 +143,6 @@ TopMenu.prototype._createGui = function () {
var refreshCommentButton = Functions.createElement({
type: "button",
className: "minerva-overview-button",
name: "refreshCommentButton",
content: "<i class='fa fa-refresh' style='font-size:21px; font-weight:400;'></i>",
style: "display:none",
xss: false
......@@ -148,7 +153,6 @@ TopMenu.prototype._createGui = function () {
var clearButton = Functions.createElement({
type: "button",
className: "minerva-overview-button",
name: "clearButton",
content: "<i class='fa fa-times' style='font-size:18px; font-weight:300; padding-right:10px;'></i>CLEAR",
xss: false
});
......@@ -187,16 +191,15 @@ TopMenu.prototype.init = function () {
commentCheckbox.onclick = function () {
ServerConnector.getSessionData(project).setShowComments(commentCheckbox.checked);
if (commentCheckbox.checked) {
$(refreshCommentButton).css("display","inline");
$(refreshCommentButton).css("display", "inline");
} else {
$(refreshCommentButton).css("display","none");
$(refreshCommentButton).css("display", "none");
}
return self.getMap().refreshComments().then(null, GuiConnector.alert);
};
refreshCommentButton.onclick = (function () {
return function () {
self.getMap().refreshComments();
return false;
return self.getMap().refreshComments();
};
})();
......@@ -207,16 +210,18 @@ TopMenu.prototype.init = function () {
};
})();
if (project.getTopOverviewImage() !== undefined && project.getTopOverviewImage() !== null) {
if (project.getTopOverviewImage() !== undefined) {
self._overviewDialog = new OverviewDialog({
customMap: self.getMap(),
configuration: self.getConfiguration(),
project: self.getProject(),
element: self.getControlElement(PanelControlElementType.OVERVIEW_DIALOG_DIV)
});
var showOverviewButton = self.getControlElement(PanelControlElementType.MENU_SHOW_OVERVIEW_BUTTON);
showOverviewButton.onclick = function () {
return self._overviewDialog.showOverview();
};
$(showOverviewButton).css("display","inline-block");
$(showOverviewButton).css("display", "inline-block");
}
if (ServerConnector.getSessionData().getShowComments()) {
......@@ -268,6 +273,7 @@ TopMenu.prototype.destroy = function () {
if (self._overviewDialog !== undefined) {
self._overviewDialog.destroy();
}
clearInterval(self._cronFunction);
return Promise.resolve();
};
......@@ -284,4 +290,57 @@ TopMenu.prototype.toggleLegend = function () {
}
};
/**
*
* @returns {Promise}
*/
TopMenu.prototype.checkIfSessionIsGoingToExpire = function () {
var self = this;
var lastAccessTimestamp = self.getServerConnector().getSessionData().getLastRequestTimeStamp();
var sessionInactivityOption = self.getConfiguration().getOption(ConfigurationType.SESSION_LENGTH);
var sessionInactivityLength = parseInt(sessionInactivityOption.getValue());
var sessionExpireTimestamp = lastAccessTimestamp + sessionInactivityLength;
var currentTimestamp = Math.floor(Date.now() / 1000);
//if session is going to expire in 10 minutes show information
if (sessionExpireTimestamp - currentTimestamp < 10 * 60) {
self.showSessionExpire(sessionExpireTimestamp - currentTimestamp);
} else {
self.hideSessionExpire();
}
//if session expired
if (sessionExpireTimestamp < currentTimestamp) {
return self.getServerConnector().logout();
}
return Promise.resolve();
};
/**
*
* @param {number} timeInSeconds
*/
TopMenu.prototype.showSessionExpire = function (timeInSeconds) {
var self = this;
var minutes = Math.floor(timeInSeconds / 60);
var seconds = Math.floor(timeInSeconds - minutes * 60);
var message = "Session expires in " + minutes + " minutes " + seconds + " seconds";
var button = Functions.createElement({
type: "button",
content: "EXTEND",
className: "minerva-extend-session-button",
onclick: function () {
return self.getServerConnector().extendSession();
}
});
$(".minerva-session-expire", self.getElement()).empty().append("<span>" + message + "</span>").append(button).show();
};
/**
*
*/
TopMenu.prototype.hideSessionExpire = function () {
$(".minerva-session-expire", this.getElement()).empty().hide();
};
module.exports = TopMenu;
\ No newline at end of file
frontend-js/src/main/js/map/data/Project.js
View file @ d77743c1
......@@ -298,7 +298,11 @@ Project.prototype.getTopOverviewImage = function () {
* @param {OverviewImage} topOverviewImage
*/
Project.prototype.setTopOverviewImage = function (topOverviewImage) {
if (topOverviewImage === null) {
this._topOverviewImage = undefined;
} else {
this._topOverviewImage = topOverviewImage;
}
};
/**
......
frontend-js/src/main/js/minerva.js
View file @ d77743c1
......@@ -389,7 +389,9 @@ function create(params) {
topMenu = new TopMenu({
element: functions.getElementByClassName(element, "minerva-top-menu"),
customMap: customMap
customMap: customMap,
configuration: params.getConfiguration(),
project: params.getProject()
});
legend = new Legend({
......
frontend-js/src/test/js/gui/topMenu/TopMenu-test.js
View file @ d77743c1
......@@ -18,7 +18,8 @@ describe('TopMenu', function () {
new TopMenu({
element: testDiv,
customMap: map
customMap: map,
configuration: helper.getConfiguration()
});
assert.equal(logger.getWarnings().length, 0);
......@@ -30,7 +31,8 @@ describe('TopMenu', function () {
var topMenu = new TopMenu({
element: testDiv,
customMap: map
customMap: map,
configuration: helper.getConfiguration()
});
return topMenu.init();
......@@ -42,9 +44,14 @@ describe('TopMenu', function () {
var topMenu = new TopMenu({
element: testDiv,
customMap: map
customMap: map,
configuration: helper.getConfiguration()
});
var legend = new Legend({
element: document.createElement("div"), customMap: map,
configuration: helper.getConfiguration(),
project: map.getProject()
});
var legend = new Legend({element: document.createElement("div"), customMap: map});
topMenu.setLegend(legend);
return topMenu.init().then(function () {
$("input", testDiv).prop('checked', true);
......
frontend-js/src/test/js/minerva-test.js
View file @ d77743c1
......@@ -58,7 +58,7 @@ describe('minerva global', function () {
customMap = result;
assert.ok(result);
assert.equal(logger.getWarnings().length, 0);
var showOverviewButton = document.getElementsByName("showOverviewButton")[0];
var showOverviewButton = $(".minerva-overview-button")[0];
return showOverviewButton.onclick();
}).then(function () {
return customMap.destroy();
......
frontend-js/testFiles/apiCalls/configuration/token=MOCK_TOKEN_ID&
View file @ d77743c1
{"annotators":[{"className":"lcsb.mapviewer.annotation.services.annotators.BrendaAnnotator","description":"","elementClassNames":["lcsb.mapviewer.model.map.species.Protein","lcsb.mapviewer.model.map.species.Gene","lcsb.mapviewer.model.map.species.Rna"],"name":"BRENDA","parametersDefinitions":[],"url":"http://www.brenda-enzymes.org"},{"className":"lcsb.mapviewer.annotation.services.annotators.BiocompendiumAnnotator","description":"","elementClassNames":["lcsb.mapviewer.model.map.species.Protein","lcsb.mapviewer.model.map.species.Gene","lcsb.mapviewer.model.map.species.Rna"],"name":"Biocompendium","parametersDefinitions":[],"url":"http://biocompendium.embl.de/"},{"className":"lcsb.mapviewer.annotation.services.annotators.CazyAnnotator","description":"","elementClassNames":["lcsb.mapviewer.model.map.species.Protein","lcsb.mapviewer.model.map.species.Gene","lcsb.mapviewer.model.map.species.Rna"],"name":"CAZy","parametersDefinitions":[],"url":"http://commonchemistry.org"},{"className":"lcsb.mapviewer.annotation.services.annotators.ChebiAnnotator","description":"","elementClassNames":["lcsb.mapviewer.model.map.species.Chemical"],"name":"Chebi","parametersDefinitions":[],"url":"http://www.ebi.ac.uk/chebi/"},{"className":"lcsb.mapviewer.annotation.services.annotators.UniprotAnnotator","description":"","elementClassNames":["lcsb.mapviewer.model.map.species.Protein","lcsb.mapviewer.model.map.species.Gene","lcsb.mapviewer.model.map.species.Rna"],"name":"Uniprot","parametersDefinitions":[],"url":"http://www.uniprot.org/"},{"className":"lcsb.mapviewer.annotation.services.annotators.GoAnnotator","description":"","elementClassNames":["lcsb.mapviewer.model.map.species.Phenotype","lcsb.mapviewer.model.map.compartment.Compartment","lcsb.mapviewer.model.map.species.Complex"],"name":"Gene Ontology","parametersDefinitions":[],"url":"http://amigo.geneontology.org/amigo"},{"className":"lcsb.mapviewer.annotation.services.annotators.HgncAnnotator","description":"","elementClassNames":["lcsb.mapviewer.model.map.species.Protein","lcsb.mapviewer.model.map.species.Rna","lcsb.mapviewer.model.map.species.Gene"],"name":"HGNC","parametersDefinitions":[],"url":"http://www.genenames.org"},{"className":"lcsb.mapviewer.annotation.services.annotators.KeggAnnotator","description":"Annotations extracted from KEGG ENZYME Database based on species EC numbers. Annotation include relevant publications and homologous genes for given EC numbers.","elementClassNames":["lcsb.mapviewer.model.map.species.Protein","lcsb.mapviewer.model.map.species.Gene","lcsb.mapviewer.model.map.species.Rna"],"name":"KEGG","parametersDefinitions":[{"name":"KEGG organism identifier","description":"Space-delimited list of organisms codes for which homologous genes (GENE section in the KEGG enzyme record) should be imported. Currently only ATH (Arabidopsis Thaliana) is supported.","type":"java.lang.String"}],"url":"http://www.genome.jp/kegg/"},{"className":"lcsb.mapviewer.annotation.services.annotators.PdbAnnotator","description":"","elementClassNames":["lcsb.mapviewer.model.map.species.Protein","lcsb.mapviewer.model.map.species.Rna","lcsb.mapviewer.model.map.species.Gene"],"name":"Protein Data Bank","parametersDefinitions":[],"url":"http://www.pdbe.org/"},{"className":"lcsb.mapviewer.annotation.services.annotators.ReconAnnotator","description":"","elementClassNames":["lcsb.mapviewer.model.map.species.Chemical","lcsb.mapviewer.model.map.reaction.Reaction"],"name":"Recon annotator","parametersDefinitions":[],"url":"http://humanmetabolism.org/"},{"className":"lcsb.mapviewer.annotation.services.annotators.EntrezAnnotator","description":"","elementClassNames":["lcsb.mapviewer.model.map.species.Protein","lcsb.mapviewer.model.map.species.Rna","lcsb.mapviewer.model.map.species.Gene"],"name":"Entrez 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frontend-js/testFiles/apiCalls/projects/complex_model_with_submaps/statistics/token=MOCK_TOKEN_ID&
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