arrows handling in SBML fixed

CHANGELOG

@@ -9,6 +9,7 @@ minerva (14.0.5) stable; urgency=medium
     produce empty screen for several seconds/minutes - now the loading icon is
     present (#1025)
   * Bug fix: search for NADH drug resulted in drug with empty name (#1018)
+  * Bug fix: export to SBML didn't handle properly arrows (#1015)
 
  -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 02 Dec 2019 16:00:00 +0200
 

converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlBioEntityExporter.java

@@ -292,7 +292,7 @@ public abstract class SbmlBioEntityExporter<T extends BioEntity, S extends org.s
   }
 
   private void createCircleLineEnding(LineEnding result) {
-    BoundingBox boundingBox = createBoundingBox(-2, 0, 4, 4, 0);
+    BoundingBox boundingBox = createBoundingBox(-2, 0, 0, 4, 4);
     result.getGroup().setFill(getColorDefinition(Color.WHITE).getId());
     result.setBoundingBox(boundingBox);
     Ellipse ellipse = new Ellipse();
@@ -308,7 +308,7 @@ public abstract class SbmlBioEntityExporter<T extends BioEntity, S extends org.s
   }
 
   private void createOpenLineEnding(LineEnding result) {
-    BoundingBox boundingBox = createBoundingBox(-12, -6, 12, 12, 0);
+    BoundingBox boundingBox = createBoundingBox(-12, -6, 0, 12, 12);
     result.setBoundingBox(boundingBox);
     Polygon polygon = new Polygon();
     polygon.addElement(createRenderPoint(0, 0));
@@ -319,7 +319,7 @@ public abstract class SbmlBioEntityExporter<T extends BioEntity, S extends org.s
   }
 
   private void createDiamondLineEnding(LineEnding result) {
-    BoundingBox boundingBox = createBoundingBox(-18, -6, 18, 12, 0);
+    BoundingBox boundingBox = createBoundingBox(-18, -6, 0, 18, 12);
     result.setBoundingBox(boundingBox);
     result.getGroup().setFill(getColorDefinition(Color.WHITE).getId());
     Polygon polygon = new Polygon();
@@ -332,7 +332,7 @@ public abstract class SbmlBioEntityExporter<T extends BioEntity, S extends org.s
   }
 
   private void createCrossBarLineEnding(LineEnding result) {
-    BoundingBox boundingBox = createBoundingBox(0, -6, 1, 12, 0);
+    BoundingBox boundingBox = createBoundingBox(0, -6, 0, 1, 12);
     result.setBoundingBox(boundingBox);
     Polygon crossBar = new Polygon();
     crossBar.addElement(createRenderPoint(0, 0));
@@ -346,7 +346,7 @@ public abstract class SbmlBioEntityExporter<T extends BioEntity, S extends org.s
   }
 
   private void createFullLineEnding(LineEnding result) {
-    BoundingBox boundingBox = createBoundingBox(-12, -6, 12, 12, 0);
+    BoundingBox boundingBox = createBoundingBox(-12, -6, 0, 12, 12);
     result.setBoundingBox(boundingBox);
     result.getGroup().setFill(getColorDefinition(Color.BLACK).getId());
     Polygon polygon = new Polygon();
@@ -358,7 +358,7 @@ public abstract class SbmlBioEntityExporter<T extends BioEntity, S extends org.s
   }
 
   private void createBlankCrossBarLineEnding(LineEnding result) {
-    BoundingBox boundingBox = createBoundingBox(-18, -6, 18, 12, 0);
+    BoundingBox boundingBox = createBoundingBox(-18, -6, 0, 18, 12);
     result.setBoundingBox(boundingBox);
     result.getGroup().setFill(getColorDefinition(Color.WHITE).getId());
     Polygon polygon = new Polygon();