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minerva
core
Commits
bd5424a0
Commit
bd5424a0
authored
Mar 19, 2021
by
Piotr Gawron
Browse files
fix test compilation issues
parent
a144a489
Pipeline
#38616
passed with stage
in 20 minutes and 8 seconds
Changes
3
Pipelines
1
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Side-by-side
converter-sbml/src/test/java/lcsb/mapviewer/converter/model/sbml/species/SbmlSpeciesExporterRenderShapeTest.java
View file @
bd5424a0
...
...
@@ -15,7 +15,6 @@ import org.junit.runners.Parameterized;
import
org.junit.runners.Parameterized.Parameters
;
import
org.sbml.jsbml.ext.render.LocalStyle
;
import
lcsb.mapviewer.converter.model.sbml.SbmlBioEntityExporter
;
import
lcsb.mapviewer.converter.model.sbml.SbmlTestFunctions
;
import
lcsb.mapviewer.model.map.model.Model
;
import
lcsb.mapviewer.model.map.model.ModelFullIndexed
;
...
...
@@ -61,7 +60,7 @@ public class SbmlSpeciesExporterRenderShapeTest extends SbmlTestFunctions {
Model
model
=
new
ModelFullIndexed
(
null
);
model
.
addElement
(
species
);
Sbml
BioEntityExporter
<
Species
,
org
.
sbml
.
jsbml
.
Species
>
exporter
=
helper
.
createExporter
(
model
);
Sbml
SpeciesExporter
exporter
=
helper
.
createExporter
(
model
);
LocalStyle
style
=
exporter
.
createStyle
(
species
);
assertNotNull
(
style
);
...
...
converter-sbml/src/test/java/lcsb/mapviewer/converter/model/sbml/species/SbmlSpeciesExporterTest.java
View file @
bd5424a0
...
...
@@ -75,7 +75,7 @@ public class SbmlSpeciesExporterTest extends SbmlTestFunctions {
model
.
addElement
(
protein1
);
model
.
addElement
(
protein2
);
Sbml
BioEntityExporter
<
Species
,
org
.
sbml
.
jsbml
.
Species
>
exporter
=
helper
.
createExporter
(
model
,
Arrays
.
asList
(
SbmlExtension
.
values
()));
Sbml
SpeciesExporter
exporter
=
helper
.
createExporter
(
model
,
Arrays
.
asList
(
SbmlExtension
.
values
()));
assertFalse
(
exporter
.
getSbmlIdKey
(
protein1
).
equals
(
exporter
.
getSbmlIdKey
(
protein2
)));
}
...
...
converter-sbml/src/test/java/lcsb/mapviewer/converter/model/sbml/species/SbmlSpeciesExporterTestHelper.java
View file @
bd5424a0
...
...
@@ -14,7 +14,7 @@ import lcsb.mapviewer.model.map.species.Species;
public
class
SbmlSpeciesExporterTestHelper
{
org
.
sbml
.
jsbml
.
Model
sbmlModel
;
public
Sbml
BioEntityExporter
<
Species
,
org
.
sbml
.
jsbml
.
Species
>
createExporter
(
Model
model
,
Collection
<
SbmlExtension
>
sbmlExtensions
)
public
Sbml
SpeciesExporter
createExporter
(
Model
model
,
Collection
<
SbmlExtension
>
sbmlExtensions
)
throws
InconsistentModelException
{
SBMLDocument
doc
=
new
SBMLDocument
(
3
,
1
);
sbmlModel
=
doc
.
createModel
(
model
.
getIdModel
());
...
...
@@ -26,11 +26,11 @@ public class SbmlSpeciesExporterTestHelper {
Arrays
.
asList
(
SbmlExtension
.
values
()));
compartmentExporter
.
exportElements
();
Sbml
BioEntityExporter
<
Species
,
org
.
sbml
.
jsbml
.
Species
>
result
=
new
SbmlSpeciesExporter
(
sbmlModel
,
model
,
sbmlExtensions
,
compartmentExporter
);
Sbml
SpeciesExporter
result
=
new
SbmlSpeciesExporter
(
sbmlModel
,
model
,
sbmlExtensions
,
compartmentExporter
);
return
result
;
}
public
Sbml
BioEntityExporter
<
Species
,
org
.
sbml
.
jsbml
.
Species
>
createExporter
(
Model
model
)
throws
InconsistentModelException
{
public
Sbml
SpeciesExporter
createExporter
(
Model
model
)
throws
InconsistentModelException
{
return
createExporter
(
model
,
Arrays
.
asList
(
new
SbmlExtension
[]
{
SbmlExtension
.
RENDER
,
SbmlExtension
.
LAYOUT
}));
}
...
...
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