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minerva
core
Commits
b53f6fa8
Commit
b53f6fa8
authored
Mar 25, 2019
by
Piotr Gawron
Browse files
changelog
parent
ad58b81d
Pipeline
#9463
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in 27 minutes and 33 seconds
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CHANGELOG
View file @
b53f6fa8
minerva
(
12.2.0
~
beta
.3
)
unstable
;
urgency
=
medium
*
Bug
fix
:
Icons
are
still
not
properly
loaded
on
Safari
(#
661
)
*
Bug
fix
:
fetching
information
about
publication
with
invalid
(
non
numeric
)
pubmed
id
triggered
exception
(#
737
)
*
Bug
fix
:
proper
id
is
used
in
list
of
publications
when
publication
id
is
invalid
(#
735
)
*
Bug
fix
:
closing
Add
Project
window
was
taking
infinity
(#
734
)
*
Bug
fix
:
align
of
checkboxes
in
top
right
corner
fixed
(#
733
)
*
Bug
fix
:
uploading
SBML
file
without
layout
resulted
in
overlapping
compartments
(#
736
)
*
Bug
fix
:
migration
scripts
are
compatibile
with
postgres
9.3
version
that
is
default
on
Ubuntu
14
(#
762
)
*
Bug
fix
:
after
project
was
modified
it
could
happen
that
user
was
unable
to
upload
data
overlay
(#
752
)
*
Bug
fix
:
update
/
remove
button
is
disabled
when
user
has
no
privileges
for
managing
overlays
(#
742
)
*
Bug
fix
:
when
user
cannot
manage
users
information
in
overlays
and
users
tab
in
edit
project
dialog
is
provided
instead
of
hiding
tabs
(#
756
)
--
Piotr
Gawron
<
piotr
.
gawron
@
uni
.
lu
>
Wed
,
25
Mar
2019
10
:
00
:
00
+
0200
minerva
(
12.2.0
~
beta
.2
)
unstable
;
urgency
=
medium
*
Bug
fix
:
order
of
the
overlays
is
defined
explicitly
also
for
general
overlays
(#
684
)
*
Bug
fix
:
files
are
saved
in
proper
folder
(#
694
,
#
670
)
*
Bug
fix
:
removing
comments
in
a
project
asked
for
confirmation
twice
after
edit
project
dialog
for
specific
project
was
opened
;
closed
and
opened
again
(#
697
)
*
Bug
fix
:
clicking
on
compartment
border
inside
pathway
should
return
compartment
,
not
a
pathway
(#
324
)
*
Bug
fix
:
clicking
outside
of
the
element
sometimes
resulted
with
the
invalid
element
highlighted
(#
324
)
*
Bug
fix
:
parent
compartment
/
pathway
use
proper
type
name
in
left
panel
(#
324
)
*
Bug
fix
:
editing
/
removing
project
requires
Map
Management
privilege
(#
681
)
*
Bug
fix
:
when
removeAllListeners
is
called
list
of
registered
listeners
is
cleaned
(#
687
)
*
Bug
fix
:
when
plugin
is
removed
the
html
elements
associated
with
it
are
removed
as
well
(#
686
)
*
Bug
fix
:
when
creating
new
user
default
privileges
are
set
properly
(#
692
)
*
Bug
fix
:
import
from
SBML
issue
-
reaction
with
product
and
modifier
being
the
same
element
caused
exception
(#
703
)
*
Bug
fix
:
plugin
can
be
added
after
plugin
has
been
removed
in
admin
plugin
panel
(#
686
)
*
Bug
fix
:
too
many
annotations
(>=
100
)
caused
misaligning
in
the
left
panel
(#
708
)
*
Bug
fix
:
text
was
outside
the
popup
window
(#
711
)
*
Bug
fix
:
custom
semantic
zooming
contains
multiple
overlays
checkbox
was
disabled
(#
715
)
*
Bug
fix
:
export
to
svg
contains
viewBox
info
(#
716
)
*
Bug
fix
:
import
from
sbml
with
layout
could
crash
when
two
elements
occupied
the
exact
same
position
(#
717
)
*
Bug
fix
:
overlays
added
via
API
couldn
't be visualized after refresh (#718)
* Bug fix: Safari sometimes cached server responses and used wrong data, for
example in admin panel configuration tab (#719)
* Bug fix: description of transcription site is centered (#720)
* Bug fix: selecting too few parameters in export doesn'
t
throw
reportable
error
(#
721
)
*
Bug
fix
:
changes
in
selected
checkbox
in
add
project
dialog
block
UI
(#
722
)
*
Bug
fix
:
providing
invalid
overlay
id
in
url
could
break
minerva
(#
726
)
*
Bug
fix
:
removing
project
that
doesn
't exist doesn'
t
cause
500
error
(#
723
)
*
Bug
fix
:
Editing
project
with
images
and
submaps
could
cause
a
problem
(#
725
)
*
Bug
fix
:
opening
map
with
invalid
id
shows
proper
error
message
(#
724
)
*
Bug
fix
:
Fixing
an
issue
where
search
panel
was
not
properly
resized
on
expansion
(#
682
)
*
Small
improvement
:
highlighting
table
rows
in
admin
panel
uses
better
contrast
color
(#
706
)
--
Piotr
Gawron
<
piotr
.
gawron
@
uni
.
lu
>
Wed
,
20
Feb
2019
14
:
00
:
00
+
0200
minerva
(
12.2.0
~
beta
.1
)
unstable
;
urgency
=
medium
*
Small
improvement
:
list
of
publication
can
be
filtered
by
submap
(#
614
)
*
Small
improvement
:
report
bug
utility
shows
confirmation
dialog
on
success
(#
648
)
*
Small
improvement
:
size
of
add
overlay
window
adjusted
to
show
more
data
without
scrollbars
(#
657
)
*
Small
improvement
:
all
popup
dialogs
in
the
app
have
dialog
specific
css
class
names
(#
665
)
*
Bug
fix
:
loading
icon
is
not
overlapping
input
in
the
search
panel
(#
404
)
*
Bug
fix
:
position
of
transcription
sites
in
genes
are
computed
properly
(#
553
)
*
Bug
fix
:
REQUEST
AN
ACCOUNT
was
enabled
when
associated
email
was
invalid
(#
626
)
*
Bug
fix
:
layout
exported
to
SBML
can
be
properly
visualized
by
COPASI
(#
654
)
*
Bug
fix
:
working
with
too
many
maps
within
the
single
session
could
crash
connection
to
server
(#
651
)
*
Bug
fix
:
invalid
pubmed
id
could
crash
listing
/
downloading
publications
(#
656
)
*
Bug
fix
:
icons
in
safari
sometimes
disappear
(#
661
)
*
Bug
fix
:
downloading
reference
genome
for
the
second
time
resulted
in
an
error
(#
670
)
*
Bug
fix
:
plugin
validation
in
admin
panel
improved
to
catch
more
problems
(#
672
)
*
Bug
fix
:
drawing
corrupted
heterodimer
association
in
CellDesigner
could
crash
map
upload
(#
673
)
*
Bug
fix
:
custom
semantic
zooming
didn
't work with pathways imported from
CellDesigner layers (#678)
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 7 Feb 2019 14:00:00 +0200
minerva (12.2.0~beta.0) unstable; urgency=medium
minerva
(
12.2.0
)
stable
;
urgency
=
medium
*
Feature
:
bug
report
utility
* Small improvement: JS plugin can create listener that is triggered on
search results focus change
-- Piotr Gawron <piotr.gawron@uni.lu> Wed, 23 Jan 2019 15:00:00 +0200
minerva (12.2.0~alpha.1) unstable; urgency=medium
* Bug fix: problems with SBML-CellDesigner translation fixed
* Bug fix: gitlab CI tests fixed
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 17 Jan 2019 15:00:00 +0200
minerva (12.2.0~alpha.0) unstable; urgency=medium
*
Feature
:
url
GET
parameters
support
all
kind
of
search
and
selected
overlays
highlight
*
Feature
:
user
can
create
custom
logging
configuration
in
file
...
...
@@ -125,6 +11,15 @@ minerva (12.2.0~alpha.0) unstable; urgency=medium
file
formats
*
Feature
:
current
state
of
the
browsed
map
is
reflected
in
the
url
(
position
,
zoom
,
overlays
,
search
queries
,
etc
.)
*
Small
improvement
:
highlighting
table
rows
in
admin
panel
uses
better
contrast
color
(#
706
)
*
Small
improvement
:
list
of
publication
can
be
filtered
by
submap
(#
614
)
*
Small
improvement
:
size
of
add
overlay
window
adjusted
to
show
more
data
without
scrollbars
(#
657
)
*
Small
improvement
:
all
popup
dialogs
in
the
application
have
dialog
specific
css
class
names
(#
665
)
*
Small
improvement
:
JS
plugin
can
create
listener
that
is
triggered
on
search
results
focus
change
*
Small
improvement
:
export
to
SBML
includes
unit
factors
*
Small
improvement
:
mesh
identifiers
are
resolved
to
meshb
.
nlm
.
nih
.
gov
urls
*
Small
improvement
:
genetics
information
allows
to
provide
information
about
...
...
@@ -158,7 +53,48 @@ minerva (12.2.0~alpha.0) unstable; urgency=medium
has
proper
access
level
*
Small
improvement
:
'REQUEST AN ACCOUNT'
link
is
available
only
the
contact
email
account
is
provided
* Small improvement: Plugin API allows to show/hide data overlays
*
Small
improvement
:
Plugin
API
allows
to
show
/
hide
data
overlays
*
Bug
fix
:
Icons
were
sometimes
not
properly
loaded
on
Safari
(#
661
)
*
Bug
fix
:
migration
scripts
are
compatibile
with
postgres
9.3
version
that
is
default
on
Ubuntu
14
(#
762
)
*
Bug
fix
:
update
/
remove
button
is
disabled
when
user
has
no
privileges
for
managing
overlays
(#
742
)
*
Bug
fix
:
when
user
cannot
manage
users
information
in
overlays
and
users
tab
in
edit
project
dialog
is
provided
instead
of
hiding
tabs
(#
756
)
*
Bug
fix
:
removing
comments
in
a
project
asked
for
confirmation
twice
after
edit
project
dialog
for
specific
project
was
opened
;
closed
and
opened
again
(#
697
)
*
Bug
fix
:
editing
/
removing
project
requires
Map
Management
privilege
(#
681
)
*
Bug
fix
:
when
removeAllListeners
is
called
list
of
registered
listeners
is
cleaned
(#
687
)
*
Bug
fix
:
when
plugin
is
removed
the
html
elements
associated
with
it
are
removed
as
well
(#
686
)
*
Bug
fix
:
when
creating
new
user
default
privileges
are
set
properly
(#
692
)
*
Bug
fix
:
plugin
can
be
added
after
plugin
has
been
removed
in
admin
plugin
panel
(#
686
)
*
Bug
fix
:
too
many
annotations
(>=
100
)
caused
misaligning
in
the
left
panel
(#
708
)
*
Bug
fix
:
export
to
svg
contains
viewBox
info
(#
716
)
*
Bug
fix
:
overlays
added
via
API
couldn
't be visualized after refresh (#718)
* Bug fix: Safari sometimes cached server responses and used wrong data, for
example in admin panel configuration tab (#719)
* Bug fix: description of transcription site is centered (#720)
* Bug fix: selecting too few parameters in export doesn'
t
throw
reportable
error
(#
721
)
*
Bug
fix
:
providing
invalid
overlay
id
in
url
could
break
minerva
(#
726
)
*
Bug
fix
:
removing
project
that
doesn
't exist doesn'
t
cause
500
error
(#
723
)
*
Bug
fix
:
opening
map
with
invalid
id
shows
proper
error
message
(#
724
)
*
Bug
fix
:
Fixing
an
issue
where
search
panel
was
not
properly
resized
on
expansion
(#
682
)
*
Bug
fix
:
loading
icon
is
not
overlapping
input
in
the
search
panel
(#
404
)
*
Bug
fix
:
position
of
transcription
sites
in
genes
are
computed
properly
(#
553
)
*
Bug
fix
:
REQUEST
AN
ACCOUNT
was
enabled
when
associated
email
was
invalid
(#
626
)
*
Bug
fix
:
working
with
too
many
maps
within
the
single
session
could
crash
connection
to
server
(#
651
)
*
Bug
fix
:
drawing
corrupted
heterodimer
association
in
CellDesigner
could
crash
map
upload
(#
673
)
*
Bug
fix
:
export
to
CellDesigner
align
inhibition
reaction
properly
*
Bug
fix
:
export
/
import
to
/
from
SBML
handles
Heterodimer
Association
reaction
properly
...
...
@@ -174,9 +110,9 @@ minerva (12.2.0~alpha.0) unstable; urgency=medium
* Bug fix: type of the data overlay can be defined in the file content
(useful when uploading genetic variants)
* Bug fix: CLEAR button clears comment checkbox if necessary
*
Bug
fix
:
minerva
install
problem
on
ubuntu
1
6
fixed
* Bug fix: minerva install problem on ubuntu 1
8
fixed
--
Piotr
Gawron
<
piotr
.
gawron
@
uni
.
lu
>
Fri
,
11
Jan
2019
1
2
:
00
:
00
+
0200
-- Piotr Gawron <piotr.gawron@uni.lu>
Mon, 25 Mar
2019 1
7
:00:00 +0200
minerva (12.1.8) stable; urgency=medium
* Bug fix: add a project reset users custom overlays limit to default (#679)
...
...
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