From 9dbcc830be2f277728268c979c8d5205e8174812 Mon Sep 17 00:00:00 2001 From: Piotr Gawron <piotr.gawron@uni.lu> Date: Tue, 16 Oct 2018 13:10:57 +0200 Subject: [PATCH] homo sapiens was changed into homo sapien in ncbi database --- .../annotation/services/TaxonomyBackendTest.java | 16 ++++++++++------ 1 file changed, 10 insertions(+), 6 deletions(-) diff --git a/annotation/src/test/java/lcsb/mapviewer/annotation/services/TaxonomyBackendTest.java b/annotation/src/test/java/lcsb/mapviewer/annotation/services/TaxonomyBackendTest.java index 0342dce184..bd53dfb138 100644 --- a/annotation/src/test/java/lcsb/mapviewer/annotation/services/TaxonomyBackendTest.java +++ b/annotation/src/test/java/lcsb/mapviewer/annotation/services/TaxonomyBackendTest.java @@ -30,7 +30,7 @@ public class TaxonomyBackendTest extends AnnotationTestFunctions { @Autowired TaxonomyBackend taxonomyBackend; @Autowired - private GeneralCacheInterface cache; + private GeneralCacheInterface cache; @Test public void testByName() throws Exception { @@ -92,7 +92,8 @@ public class TaxonomyBackendTest extends AnnotationTestFunctions { public void testGetName() throws Exception { try { String name = taxonomyBackend.getNameForTaxonomy(new MiriamData(MiriamType.TAXONOMY, "9606")); - assertTrue(name.contains("Homo sapiens")); + logger.debug(name); + assertTrue("Taxonomy id should refer to homo sapien, but this found: " + name, name.contains("Homo sapien")); assertNotNull(taxonomyBackend.getNameForTaxonomy(new MiriamData(MiriamType.TAXONOMY, "9605"))); } catch (Exception e) { e.printStackTrace(); @@ -105,7 +106,8 @@ public class TaxonomyBackendTest extends AnnotationTestFunctions { WebPageDownloader downloader = taxonomyBackend.getWebPageDownloader(); try { WebPageDownloader mockDownloader = Mockito.mock(WebPageDownloader.class); - when(mockDownloader.getFromNetwork(anyString(), anyString(), nullable(String.class))).thenThrow(new IOException()); + when(mockDownloader.getFromNetwork(anyString(), anyString(), nullable(String.class))) + .thenThrow(new IOException()); taxonomyBackend.setWebPageDownloader(mockDownloader); taxonomyBackend.setCache(null); taxonomyBackend.getNameForTaxonomy(new MiriamData(MiriamType.TAXONOMY, "9606")); @@ -249,10 +251,11 @@ public class TaxonomyBackendTest extends AnnotationTestFunctions { WebPageDownloader downloader = taxonomyBackend.getWebPageDownloader(); try { WebPageDownloader mockDownloader = Mockito.mock(WebPageDownloader.class); - when(mockDownloader.getFromNetwork(anyString(), anyString(), nullable(String.class))).thenThrow(new IOException()); + when(mockDownloader.getFromNetwork(anyString(), anyString(), nullable(String.class))) + .thenThrow(new IOException()); taxonomyBackend.setWebPageDownloader(mockDownloader); taxonomyBackend.setCache(null); - + taxonomyBackend.refreshCacheQuery("http://google.pl/"); fail("Exception expected"); } catch (SourceNotAvailable e) { @@ -280,7 +283,8 @@ public class TaxonomyBackendTest extends AnnotationTestFunctions { WebPageDownloader downloader = taxonomyBackend.getWebPageDownloader(); try { WebPageDownloader mockDownloader = Mockito.mock(WebPageDownloader.class); - when(mockDownloader.getFromNetwork(anyString(), anyString(), nullable(String.class))).thenThrow(new IOException()); + when(mockDownloader.getFromNetwork(anyString(), anyString(), nullable(String.class))) + .thenThrow(new IOException()); taxonomyBackend.setWebPageDownloader(mockDownloader); assertEquals(ExternalServiceStatusType.DOWN, taxonomyBackend.getServiceStatus().getStatus()); } catch (Exception e) { -- GitLab