remove duplicate entries from line

converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlParser.java

@@ -1156,20 +1156,6 @@ public class SbgnmlXmlParser {
     }
   }
 
-  /**
-   * Returns center point for given process.
-   * 
-   * @param p
-   *          completely parsed process to compute center point from
-   * @return center point for given process
-   */
-  private Point2D getCenterPointFromProcess(Process p) {
-    Double centralPointX = new Double(p.getCentralPoint().getBbox().getX() + p.getCentralPoint().getBbox().getW() / 2);
-    Double centralPointY = new Double(p.getCentralPoint().getBbox().getY() + p.getCentralPoint().getBbox().getH() / 2);
-    Point2D centerOfReactionPoint = new Point2D.Double(centralPointX, centralPointY);
-    return centerOfReactionPoint;
-  }
-
   /**
    * Returns proper Reaction object based on given glyph clazz.
    * 
@@ -1255,11 +1241,6 @@ public class SbgnmlXmlParser {
       Glyph source = (Glyph) a.getSource();
       reactant.setElement(model.getElementByElementId(source.getId()));
       List<Point2D> pointList = getLinePoints(a);
-      if (p.getReagentArcs().size() == 1) {
-        pointList.add(getCenterPointFromProcess(p));
-      } else {
-        pointList.add(pointList.get(pointList.size() - 1));
-      }
       PolylineData line = parseLine(a, pointList);
       reactant.setLine(line);
       if (andOperator != null) {