diff --git a/CHANGELOG b/CHANGELOG index f767a1902c7377c07627888a149c361482646e7a..8fee89e75aaab5b5997c20c8ae2fe396bca0b536 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,18 +1,73 @@ minerva (12.2.0~alpha.0) stable; urgency=medium + * Feature: url GET parameters support all kind of search and selected overlays + highlight + * Feature: user can create custom logging configuration in file + /etc/minerva/log4j.properties + * Feature: plugin panel in admin allows to configure set of available plugins + * Feature: import export from SBML supports RENDER package + * Feature: import export from SBML supports MULTI package + * Feature: API tool providing possibility to transform different types of + file formats + * Feature: current state of the browsed map is reflected in the url (position, + zoom, overlays, search queries, etc.) + * Small improvement: export to SBML includes unit factors + * Small improvement: mesh identifiers are resolved to meshb.nlm.nih.gov urls + * Small improvement: genetics information allows to provide information about + modification on peptide level that could be visualized in MolArt + * Small improvement: allow to control the background and font color of areas + drawn from text areas in CellDesigner "layers" + * Small improvement: config logo location is relative to the root minerva + deployment directory + * Small improvement: there is branding minerva logo in the left panel + * Small improvement: there is possibility to download part of the map limited + to set of reactions/elements + * Small improvement: allow admin to configure parameters displayed in the + left panel + * Small improvement: arrows for Transcription Starting Sites looks more like + in CellDesigner + * Small improvement: popup window appear with info about exceeding max number + of search results when necessary + * Small improvement: plugins can define default width of the container tab + * Small improvement: new miriam type is handled: ClinicalTrials.gov + * Small improvement: click on the border of compartment select the + compartment + * Small improvement: there is max size of the map in configuration panel that + disables upload of too big files + * Small improvement: hitting enter on login page logs in the user (no need to + click on the login button) + * Small improvement: refresh button in overlays panel (useful when data + overlays are uploaded separately in using API calls) + * Small improvement: list of publications is downloadable + * Small improvement: export of reactions support filtering by reaction type + * Small improvement: 'BACK TO MAP' link is available only when guest account + has proper access level + * Small improvement: 'REQUEST AN ACCOUNT' link is available only the contact + email account is provided + * Small improvement: Plugin API allows to show/hide data overlays * Bug fix: export to CellDesigner align inhibition reaction properly * Bug fix: export/import to/from SBML handles Heterodimer Association reaction properly - * Small improvement: export to SBML includes unit factors - * Feature: url GET parameters support all kind of search and selected overlays - highligh - + * Bug fix: logo doesn't need to be square + * Bug fix: when clicking on a search link (in overview window), input in the + left tab was not modified + * Bug fix: in admin panel changing of genome version is blocking interface + until data about url is retrieved + * Bug fix: export of species inside complex into CellDesigner was causing + problems when reading the file in CellDesigner + * Bug fix: export to SBGN did not export compartments + * Bug fix: export of complex states to SBGN did not work + * Bug fix: type of the data overlay can be defined in the file content + (useful when uploading genetic variants) + * Bug fix: CLEAR button clears comment checkbox if necessary + +-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 11 Jan 2019 12:00:00 +0200 minerva (12.1.5) stable; urgency=medium * Bug fix: Drugbank changed output format which crashed drug connector * Bug fix: word wrapping fixed in overlay table for long overlay names in Firefox browser - -- Piotr Gawron <piotr.gawron@uni.lu> Fri, 10 Janc 2019 14:00:00 +0200 + -- Piotr Gawron <piotr.gawron@uni.lu> Thu, 10 Jan 2019 14:00:00 +0200 minerva (12.1.4) stable; urgency=medium * Bug fix: no check for limit on custom data overlays fixed