Commit 859dcef4 authored by Piotr Gawron's avatar Piotr Gawron
Browse files

remove empty javadoc tags

parent 09221ef7
......@@ -230,7 +230,6 @@ public class BigFileCache {
* @return new {@link BigFileEntry} for given url
* @throws URISyntaxException
* thrown when url is invalid
* @throws IOException
*/
private BigFileEntry createEntryForBigFile(final String url) throws URISyntaxException, IOException {
String localPath = configurationDao.getValueByType(ConfigurationElementType.BIG_FILE_STORAGE_DIR);
......
......@@ -89,9 +89,7 @@ public class PermanentDatabaseLevelCache implements PermanentDatabaseLevelCacheI
/**
* http://forum.spring.io/forum/spring-projects/aop/52011-need-to-unwrap-a-proxy-to-get-the-object-being-proxied
*
* @param bean
* @return
* @throws Exception
*/
private final Object unwrapProxy(final Object bean) throws Exception {
......
......@@ -24,8 +24,6 @@ public interface PermanentDatabaseLevelCacheInterface extends QueryCacheInterfac
/**
* Waits for all tasks in the cache to finish (refresh/get/etc).
*
* @throws ExecutionException
* @throws InterruptedException
*/
void waitToFinishTasks() throws InterruptedException, ExecutionException;
......
......@@ -224,7 +224,6 @@ public class KeggAnnotator extends ElementAnnotator implements IExternalService
* organisms names. If the value has not been set by the user, null
* will be passed.
* @return {@link MiriamType#PUBMED}s found on the page
* @throws UniprotSearchException
*/
private Collection<MiriamData> parseKegg(final String pageContent, final AnnotatorData params) throws UniprotSearchException {
......
......@@ -331,7 +331,6 @@ public abstract class AbstractReferenceGenomeConnector extends CachableInterface
* {@link #referenceGenome}
* @param name
* {@link #name}
* @throws ReferenceGenomeConnectorException
*/
private DownloadGeneMappingGenomeVersionTask(final ReferenceGenome referenceGenome, final String name, final String url,
final IProgressUpdater updater) throws ReferenceGenomeConnectorException {
......
......@@ -126,9 +126,6 @@ public class MeSHParserTest extends AnnotationTestFunctions {
parserUnderTest.getMeSH(meshID);
}
/**
* @throws Exception
*/
@Test
public void testExternalDBStatus() throws Exception {
ExternalServiceStatus status = meshParser.getServiceStatus();
......
......@@ -104,8 +104,6 @@ public class PubmedParserTest extends AnnotationTestFunctions {
/**
* This case was problematic with old API used to retrieve data from pubmed
*
* @throws PubmedSearchException
*/
@Test
public void testProblematicCase() throws PubmedSearchException {
......
......@@ -247,7 +247,7 @@
value="BAND, BOR, BSR, BXOR, DIV, EQUAL, GE, GT, LAND, LE, LITERAL_INSTANCEOF, LOR,
LT, MINUS, MOD, NOT_EQUAL, PLUS, QUESTION, SL, SR, STAR, METHOD_REF "/>
</module>
<!-- <module name="AnnotationLocation">
<module name="AnnotationLocation">
<property name="id" value="AnnotationLocationMostCases"/>
<property name="tokens"
value="CLASS_DEF, INTERFACE_DEF, ENUM_DEF, METHOD_DEF, CTOR_DEF"/>
......@@ -258,7 +258,7 @@
<property name="allowSamelineMultipleAnnotations" value="true"/>
</module>
<module name="NonEmptyAtclauseDescription"/>
<module name="InvalidJavadocPosition"/>
<!-- <module name="InvalidJavadocPosition"/>
<module name="JavadocTagContinuationIndentation"/>
<module name="SummaryJavadoc">
<property name="forbiddenSummaryFragments"
......
......@@ -67,11 +67,6 @@ public class MinervaLoggerAppender extends AbstractAppender {
* Private constructor preventing instantiation. Appender should be created
* using factory method: {@link MinervaLoggerAppender#createAppender()}.
*
* @param name
* @param filter
* @param layout
* @param ignoreExceptions
* @param currentThreadLogOnly
*/
private MinervaLoggerAppender(final String name, final Filter filter, final Layout<? extends Serializable> layout,
final boolean ignoreExceptions, final boolean currentThreadLogOnly) {
......
......@@ -135,8 +135,6 @@ public class ColorParser {
/**
* Transforms {@link Color} into html RGB representation: #RRGGBB
*
* @param color
* @return
*/
public String colorToHtml(final Color color) {
......
......@@ -15,6 +15,7 @@ import lcsb.mapviewer.common.Configuration;
*
*/
public class PointTransformation {
/**
* Default class logger.
*/
......@@ -77,9 +78,6 @@ public class PointTransformation {
/**
* Returns a point on line.
*
* @param start
* @param end
* @param coef
* @return {@link Point2D} on line defined by input points
*/
public Point2D getPointOnLine(final Point2D start, final Point2D end, final double coef) {
......
......@@ -631,7 +631,6 @@ public class CellDesignerXmlParser extends Converter {
* @return CellDesigner xml string for the model
* @throws InconsistentModelException
* thrown when then model is invalid
* @throws InconsistentModelException
*/
public String model2Xml(final Model model, final boolean appendWarnings) throws InconsistentModelException {
MinervaLoggerAppender appender = MinervaLoggerAppender.createAppender();
......
......@@ -27,8 +27,6 @@ import lcsb.mapviewer.model.map.species.field.ModificationResidue;
* from CellDesigner specific format into standard layout.
*
* @author Piotr Gawron
*
* @param <T>
*/
public abstract class AbstractCellDesignerAliasConverter<T extends Element> implements ICellDesignerAliasConverter<T> {
......
......@@ -12,10 +12,9 @@ import lcsb.mapviewer.model.map.species.field.ModificationResidue;
* from objects retrieved from CellDesigner xml into absolute values.
*
* @author Piotr Gawron
*
* @param <T>
*/
public interface ICellDesignerAliasConverter<T extends Element> {
/**
* This method computes which anchor is the most probable for describing the
* point on the border of alias. There are 16 possible anchors on the border of
......
......@@ -565,7 +565,6 @@ public class ReactionFromXml {
* @param result
* initial data
* @return reaction with a new type
* @throws ReactionParserException
*/
Reaction createProperTypeReaction(final String type, final Reaction result) throws ReactionParserException {
ReactionLineData rdl = ReactionLineData.getByCellDesignerString(type);
......@@ -585,7 +584,6 @@ public class ReactionFromXml {
* @throws InvalidXmlSchemaException
* thrown when xml node contains data that is not supported by xml
* schema
* @throws ReactionParserException
*/
private EditPoints gateMembersToPoints(final Reaction reaction, final Node gateMembers)
throws InvalidXmlSchemaException, ReactionParserException {
......@@ -643,7 +641,6 @@ public class ReactionFromXml {
*
* @param modifier
* modifier to update
* @throws ReactionParserException
*/
private void createLineForModifier(final Modifier modifier) throws ReactionParserException {
try {
......@@ -1125,7 +1122,6 @@ public class ReactionFromXml {
* information about points
* @param hasGateMemebers
* does the reaction has gate members
* @param rld
* @throws ReactionParserException
* thrown when data for reaction is invalid
*/
......
......@@ -387,7 +387,6 @@ public enum ReactionLineData {
* original data
* @return instance of {@link Reaction} represented by this enum and copies the
* data from result parameter
* @throws ReactionParserException
*/
public Reaction createReaction(final Reaction result) throws ReactionParserException {
try {
......
......@@ -115,7 +115,6 @@ public class ReactionToXml {
* @param reaction
* reaction to transform
* @return xml representation of reaction
* @throws ConverterException
*/
public String toXml(final Reaction reaction) throws InconsistentModelException {
if (reaction.getReactants().get(0).getElement().equals(reaction.getProducts().get(0).getElement())) {
......@@ -167,7 +166,6 @@ public class ReactionToXml {
* @param reaction
* reaction for which list is generated
* @return xml node with list of modification
* @throws InconsistentModelException
*/
private String getListOfModificationsXmlStringForReaction(final Reaction reaction) throws InconsistentModelException {
StringBuilder sb = new StringBuilder();
......@@ -327,7 +325,6 @@ public class ReactionToXml {
* @param gate
* operator to which modifier is connected (if any)
* @return xml node for given modifier
* @throws InconsistentModelException
*/
private String getModifierXmlString(final Modifier modifier, final NodeOperator gate) throws InconsistentModelException {
StringBuilder sb = new StringBuilder();
......@@ -499,7 +496,6 @@ public class ReactionToXml {
* @param reaction
* reaction to be processed
* @return xml node representing annotation part
* @throws InconsistentModelException
*/
private String getAnnotationXmlStringForReaction(final Reaction reaction) throws InconsistentModelException {
String reactionClassString = getCellDesignerReactionTypeString(reaction);
......
......@@ -67,7 +67,6 @@ public class ReactionXmlParser {
* @param reaction
* reaction to transform
* @return xml representation of reaction
* @throws ConverterException
*/
public String toXml(final Reaction reaction) throws InconsistentModelException {
return reactionToXml.toXml(reaction);
......
......@@ -122,7 +122,6 @@ public abstract class AbstractElementXmlParser<T extends CellDesignerElement<?>,
* {@link Pair#getRight()}.
* @throws InvalidXmlSchemaException
* thrown when xml is invalid
* @throws CompartmentParserException
*/
public abstract Pair<String, T> parseXmlElement(final Node node)
throws InvalidXmlSchemaException, CellDesignerParserException;
......@@ -139,7 +138,6 @@ public abstract class AbstractElementXmlParser<T extends CellDesignerElement<?>,
* {@link Pair#getRight()}.
* @throws InvalidXmlSchemaException
* thrown when xmlString is invalid
* @throws CellDesignerParserException
*/
public Pair<String, T> parseXmlElement(final String xmlString)
throws InvalidXmlSchemaException, CellDesignerParserException {
......
......@@ -40,8 +40,6 @@ public class LineProperties {
/**
* Create properties from {@link PolylineData}.
*
* @param line
*/
public LineProperties(final PolylineData line) {
width = line.getWidth();
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment