From 838749dc7f7d35741944a796641400bc7fd0cedc Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Mon, 18 Dec 2017 17:14:06 +0100
Subject: [PATCH] unit tests simplified
---
.../types/ModifierTypeUtilsTest.java | 415 +++++++++---------
.../model/map/modifier/CatalysisTest.java | 127 +++---
.../model/map/modifier/InhibitionTest.java | 127 +++---
.../model/map/modifier/ModulationTest.java | 127 +++---
.../map/modifier/PhysicalStimulationTest.java | 127 +++---
.../model/map/modifier/TriggerTest.java | 127 +++---
.../map/modifier/UnknownCatalysisTest.java | 127 +++---
.../map/modifier/UnknownInhibitionTest.java | 127 +++---
.../model/map/reaction/ModifierTest.java | 107 +++--
9 files changed, 685 insertions(+), 726 deletions(-)
diff --git a/converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/types/ModifierTypeUtilsTest.java b/converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/types/ModifierTypeUtilsTest.java
index 91176fc9f1..8d1cc6df9c 100644
--- a/converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/types/ModifierTypeUtilsTest.java
+++ b/converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/types/ModifierTypeUtilsTest.java
@@ -12,6 +12,7 @@ import org.junit.After;
import org.junit.AfterClass;
import org.junit.Before;
import org.junit.Test;
+import org.mockito.Mockito;
import lcsb.mapviewer.common.exception.InvalidArgumentException;
import lcsb.mapviewer.common.exception.InvalidStateException;
@@ -29,236 +30,234 @@ import lcsb.mapviewer.model.map.species.Species;
public class ModifierTypeUtilsTest {
- ModifierTypeUtils utils = new ModifierTypeUtils();
+ ModifierTypeUtils utils = new ModifierTypeUtils();
- Modifier invalidModifier = new Modifier() {
- private static final long serialVersionUID = 1L;
- };
+ Modifier invalidModifier = Mockito.mock(Modifier.class, Mockito.CALLS_REAL_METHODS);
- @AfterClass
- public static void tearDownAfterClass() throws Exception {
- }
+ @AfterClass
+ public static void tearDownAfterClass() throws Exception {
+ }
- @Before
- public void setUp() throws Exception {
- }
+ @Before
+ public void setUp() throws Exception {
+ }
- @After
- public void tearDown() throws Exception {
- }
+ @After
+ public void tearDown() throws Exception {
+ }
- @Test
- public void testGetInvalidModifierTypeForClazz() {
- ModifierType type = utils.getModifierTypeForClazz(invalidModifier.getClass());
- assertNull(type);
- }
+ @Test
+ public void testGetInvalidModifierTypeForClazz() {
+ ModifierType type = utils.getModifierTypeForClazz(invalidModifier.getClass());
+ assertNull(type);
+ }
- @Test
- public void testGetInvalidStringTypeByModifier() {
- String type = utils.getStringTypeByModifier(invalidModifier);
- assertNull(type);
- }
+ @Test
+ public void testGetInvalidStringTypeByModifier() {
+ String type = utils.getStringTypeByModifier(invalidModifier);
+ assertNull(type);
+ }
- @Test
- public void testGetTargetLineIndexByInvalidModifier() {
- try {
- utils.getTargetLineIndexByModifier(invalidModifier);
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- assertTrue(e.getMessage().contains("Unknown modifier class"));
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
+ @Test
+ public void testGetTargetLineIndexByInvalidModifier() {
+ try {
+ utils.getTargetLineIndexByModifier(invalidModifier);
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ assertTrue(e.getMessage().contains("Unknown modifier class"));
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
- }
+ }
- @Test
- public void testGetTargetLineIndexByInvalidModifier2() {
- try {
- NodeOperator operator = new AndOperator();
- operator.addInput(new Reactant());
- utils.getTargetLineIndexByModifier(operator);
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- assertTrue(e.getMessage().contains("Invalid NodeOperator"));
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testGetTargetLineIndexByInvalidModifier2() {
+ try {
+ NodeOperator operator = new AndOperator();
+ operator.addInput(new Reactant());
+ utils.getTargetLineIndexByModifier(operator);
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ assertTrue(e.getMessage().contains("Invalid NodeOperator"));
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testGetTargetLineIndexByInvalidModifier3() {
- try {
- NodeOperator operator = new AndOperator();
- operator.addInput(invalidModifier);
- utils.getTargetLineIndexByModifier(operator);
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- assertTrue(e.getMessage().contains("Unknown modifier class"));
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testGetTargetLineIndexByInvalidModifier3() {
+ try {
+ NodeOperator operator = new AndOperator();
+ operator.addInput(invalidModifier);
+ utils.getTargetLineIndexByModifier(operator);
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ assertTrue(e.getMessage().contains("Unknown modifier class"));
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testGetAnchorPointOnReactionRectByInvalidType() {
- try {
- Reaction reaction = new Reaction();
- Reactant reactant = new Reactant();
- Product product = new Product();
- reactant.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
- product.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
- reaction.addReactant(reactant);
- reaction.addProduct(product);
- Point2D point = utils.getAnchorPointOnReactionRect(reaction, "0,0");
- assertNotNull(point);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testGetAnchorPointOnReactionRectByInvalidType() {
+ try {
+ Reaction reaction = new Reaction();
+ Reactant reactant = new Reactant();
+ Product product = new Product();
+ reactant.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
+ product.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
+ reaction.addReactant(reactant);
+ reaction.addProduct(product);
+ Point2D point = utils.getAnchorPointOnReactionRect(reaction, "0,0");
+ assertNotNull(point);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testGetAnchorPointOnReactionRectByInvalidType2() {
- try {
- Reaction reaction = new Reaction();
- Reactant reactant = new Reactant();
- Product product = new Product();
- reactant.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
- product.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
- reaction.addReactant(reactant);
- reaction.addProduct(product);
- utils.getAnchorPointOnReactionRect(reaction, "0");
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- assertTrue(e.getMessage().contains("Invalid targetLineIndex"));
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testGetAnchorPointOnReactionRectByInvalidType2() {
+ try {
+ Reaction reaction = new Reaction();
+ Reactant reactant = new Reactant();
+ Product product = new Product();
+ reactant.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
+ product.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
+ reaction.addReactant(reactant);
+ reaction.addProduct(product);
+ utils.getAnchorPointOnReactionRect(reaction, "0");
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ assertTrue(e.getMessage().contains("Invalid targetLineIndex"));
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testGetAnchorPointOnReactionRectByInvalidType3() {
- try {
- Reaction reaction = new Reaction();
- Reactant reactant = new Reactant();
- Product product = new Product();
- reactant.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
- product.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
- reaction.addReactant(reactant);
- reaction.addProduct(product);
- utils.getAnchorPointOnReactionRect(reaction, "10,10");
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- assertTrue(e.getMessage().contains("Unknown targetLineIndex"));
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testGetAnchorPointOnReactionRectByInvalidType3() {
+ try {
+ Reaction reaction = new Reaction();
+ Reactant reactant = new Reactant();
+ Product product = new Product();
+ reactant.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
+ product.setLine(new PolylineData(new Point2D.Double(), new Point2D.Double()));
+ reaction.addReactant(reactant);
+ reaction.addProduct(product);
+ utils.getAnchorPointOnReactionRect(reaction, "10,10");
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ assertTrue(e.getMessage().contains("Unknown targetLineIndex"));
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testUpdateLineEndPointForInvalidModifier() {
- try {
- utils.updateLineEndPoint(invalidModifier);
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- assertTrue(e.getMessage().contains("Unknown modifier class"));
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testUpdateLineEndPointForInvalidModifier() {
+ try {
+ utils.updateLineEndPoint(invalidModifier);
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ assertTrue(e.getMessage().contains("Unknown modifier class"));
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testUpdateLineEndPointForInvalidModifier2() {
- try {
- NodeOperator operator = new AndOperator();
- operator.addInput(new Product());
- operator.addInput(invalidModifier);
- utils.updateLineEndPoint(operator);
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- assertTrue(e.getMessage().contains("Unknown modifier class"));
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testUpdateLineEndPointForInvalidModifier2() {
+ try {
+ NodeOperator operator = new AndOperator();
+ operator.addInput(new Product());
+ operator.addInput(invalidModifier);
+ utils.updateLineEndPoint(operator);
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ assertTrue(e.getMessage().contains("Unknown modifier class"));
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testUpdateLineEndPointForInvalidModifier3() {
- try {
- NodeOperator operator = new AndOperator();
- operator.addInput(new Product());
- operator.addInput(new Product());
- utils.updateLineEndPoint(operator);
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- assertTrue(e.getMessage().contains("Operator contains invalid input"));
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testUpdateLineEndPointForInvalidModifier3() {
+ try {
+ NodeOperator operator = new AndOperator();
+ operator.addInput(new Product());
+ operator.addInput(new Product());
+ utils.updateLineEndPoint(operator);
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ assertTrue(e.getMessage().contains("Operator contains invalid input"));
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCreateInvalidModifierForStringType2() throws Exception {
- // artificial implementation of Modifier that is invalid
- class InvalidModifier extends Modifier {
- private static final long serialVersionUID = 1L;
+ @Test
+ public void testCreateInvalidModifierForStringType2() throws Exception {
+ // artificial implementation of Modifier that is invalid
+ class InvalidModifier extends Modifier {
+ private static final long serialVersionUID = 1L;
- @SuppressWarnings("unused")
- public InvalidModifier() {
- throw new NotImplementedException();
- }
+ @SuppressWarnings("unused")
+ public InvalidModifier() {
+ throw new NotImplementedException();
+ }
- @SuppressWarnings("unused")
- public InvalidModifier(Species alias, CellDesignerElement<?> element) {
- throw new NotImplementedException();
- }
- }
+ @SuppressWarnings("unused")
+ public InvalidModifier(Species alias, CellDesignerElement<?> element) {
+ throw new NotImplementedException();
+ }
+ }
- // mopdify one of the elements of OperatorType so it will have invalid
- // implementation
- ModifierType typeToModify = ModifierType.CATALYSIS;
- Class<? extends Modifier> clazz = typeToModify.getClazz();
+ // mopdify one of the elements of OperatorType so it will have invalid
+ // implementation
+ ModifierType typeToModify = ModifierType.CATALYSIS;
+ Class<? extends Modifier> clazz = typeToModify.getClazz();
- try {
- Field field = typeToModify.getClass().getDeclaredField("clazz");
- field.setAccessible(true);
- field.set(typeToModify, InvalidModifier.class);
+ try {
+ Field field = typeToModify.getClass().getDeclaredField("clazz");
+ field.setAccessible(true);
+ field.set(typeToModify, InvalidModifier.class);
- // and check if we catch properly information about problematic
- // implementation
- utils.createModifierForStringType(typeToModify.getStringName(), new GenericProtein("id"));
- fail("Exceptione expected");
- } catch (InvalidStateException e) {
- assertTrue(e.getMessage().contains("Problem with instantiation of Modifier class"));
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- } finally {
- // restore correct values for the modified type (if not then other test
- // might fail...)
- Field field = typeToModify.getClass().getDeclaredField("clazz");
- field.setAccessible(true);
- field.set(typeToModify, clazz);
- }
- }
+ // and check if we catch properly information about problematic
+ // implementation
+ utils.createModifierForStringType(typeToModify.getStringName(), new GenericProtein("id"));
+ fail("Exceptione expected");
+ } catch (InvalidStateException e) {
+ assertTrue(e.getMessage().contains("Problem with instantiation of Modifier class"));
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ } finally {
+ // restore correct values for the modified type (if not then other test
+ // might fail...)
+ Field field = typeToModify.getClass().getDeclaredField("clazz");
+ field.setAccessible(true);
+ field.set(typeToModify, clazz);
+ }
+ }
- @Test
- public void testCreateModifierForStringType2() throws Exception {
- try {
- utils.createModifierForStringType("unjkType", null);
- fail("Exceptione expected");
- } catch (InvalidArgumentException e) {
- assertTrue(e.getMessage().contains("Unknown modifier type"));
- }
- }
+ @Test
+ public void testCreateModifierForStringType2() throws Exception {
+ try {
+ utils.createModifierForStringType("unjkType", null);
+ fail("Exceptione expected");
+ } catch (InvalidArgumentException e) {
+ assertTrue(e.getMessage().contains("Unknown modifier type"));
+ }
+ }
}
diff --git a/model/src/test/java/lcsb/mapviewer/model/map/modifier/CatalysisTest.java b/model/src/test/java/lcsb/mapviewer/model/map/modifier/CatalysisTest.java
index ba1b40daf9..661fa42125 100644
--- a/model/src/test/java/lcsb/mapviewer/model/map/modifier/CatalysisTest.java
+++ b/model/src/test/java/lcsb/mapviewer/model/map/modifier/CatalysisTest.java
@@ -7,6 +7,7 @@ import org.apache.commons.lang3.SerializationUtils;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
+import org.mockito.Mockito;
import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.model.graphics.PolylineData;
@@ -14,76 +15,70 @@ import lcsb.mapviewer.model.map.species.AntisenseRna;
public class CatalysisTest {
- @Before
- public void setUp() throws Exception {
- }
+ @Before
+ public void setUp() throws Exception {
+ }
- @After
- public void tearDown() throws Exception {
- }
+ @After
+ public void tearDown() throws Exception {
+ }
- @Test
- public void testSerialization() {
- try {
- SerializationUtils.serialize(new Catalysis());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testSerialization() {
+ try {
+ SerializationUtils.serialize(new Catalysis());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor() {
- try {
- Catalysis modifier = new Catalysis(new AntisenseRna("unk_id"));
- assertNotNull(modifier);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor() {
+ try {
+ Catalysis modifier = new Catalysis(new AntisenseRna("unk_id"));
+ assertNotNull(modifier);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor2() {
- try {
- Catalysis modifier = new Catalysis(new AntisenseRna("unk_id"));
- modifier.setLine(new PolylineData());
- Catalysis modifier2 = new Catalysis(modifier);
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor2() {
+ try {
+ Catalysis modifier = new Catalysis(new AntisenseRna("unk_id"));
+ modifier.setLine(new PolylineData());
+ Catalysis modifier2 = new Catalysis(modifier);
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopy() {
- try {
- Catalysis modifier = new Catalysis(new AntisenseRna("unk_id"));
- modifier.setLine(new PolylineData());
- Catalysis modifier2 = modifier.copy();
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopy() {
+ try {
+ Catalysis modifier = new Catalysis(new AntisenseRna("unk_id"));
+ modifier.setLine(new PolylineData());
+ Catalysis modifier2 = modifier.copy();
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopyInvalid() {
- try {
- new Catalysis() {
-
- /**
- *
- */
- private static final long serialVersionUID = 1L;
- }.copy();
- fail("Exception expected");
- } catch (NotImplementedException e) {
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopyInvalid() {
+ try {
+ Mockito.mock(Catalysis.class, Mockito.CALLS_REAL_METHODS).copy();
+ fail("Exception expected");
+ } catch (NotImplementedException e) {
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
}
diff --git a/model/src/test/java/lcsb/mapviewer/model/map/modifier/InhibitionTest.java b/model/src/test/java/lcsb/mapviewer/model/map/modifier/InhibitionTest.java
index 3f8af64c8d..b33292c49c 100644
--- a/model/src/test/java/lcsb/mapviewer/model/map/modifier/InhibitionTest.java
+++ b/model/src/test/java/lcsb/mapviewer/model/map/modifier/InhibitionTest.java
@@ -7,6 +7,7 @@ import org.apache.commons.lang3.SerializationUtils;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
+import org.mockito.Mockito;
import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.model.graphics.PolylineData;
@@ -14,77 +15,71 @@ import lcsb.mapviewer.model.map.species.GenericProtein;
public class InhibitionTest {
- @Before
- public void setUp() throws Exception {
- }
+ @Before
+ public void setUp() throws Exception {
+ }
- @After
- public void tearDown() throws Exception {
- }
+ @After
+ public void tearDown() throws Exception {
+ }
- @Test
- public void testSerialization() {
- try {
- SerializationUtils.serialize(new Inhibition());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testSerialization() {
+ try {
+ SerializationUtils.serialize(new Inhibition());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor() {
- try {
- Inhibition modifier = new Inhibition(new GenericProtein("unk_id"));
- assertNotNull(modifier);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor() {
+ try {
+ Inhibition modifier = new Inhibition(new GenericProtein("unk_id"));
+ assertNotNull(modifier);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor2() {
- try {
- Inhibition modifier = new Inhibition(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- Inhibition modifier2 = new Inhibition(modifier);
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor2() {
+ try {
+ Inhibition modifier = new Inhibition(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ Inhibition modifier2 = new Inhibition(modifier);
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopy() {
- try {
- Inhibition modifier = new Inhibition(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- Inhibition modifier2 = modifier.copy();
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopy() {
+ try {
+ Inhibition modifier = new Inhibition(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ Inhibition modifier2 = modifier.copy();
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopyInvalid() {
- try {
- new Inhibition() {
-
- /**
- *
- */
- private static final long serialVersionUID = 1L;
- }.copy();
- fail("Exception expected");
- } catch (NotImplementedException e) {
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopyInvalid() {
+ try {
+ Mockito.mock(Inhibition.class, Mockito.CALLS_REAL_METHODS).copy();
+ fail("Exception expected");
+ } catch (NotImplementedException e) {
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
}
diff --git a/model/src/test/java/lcsb/mapviewer/model/map/modifier/ModulationTest.java b/model/src/test/java/lcsb/mapviewer/model/map/modifier/ModulationTest.java
index d465085a0e..626ae7b4a6 100644
--- a/model/src/test/java/lcsb/mapviewer/model/map/modifier/ModulationTest.java
+++ b/model/src/test/java/lcsb/mapviewer/model/map/modifier/ModulationTest.java
@@ -7,6 +7,7 @@ import org.apache.commons.lang3.SerializationUtils;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
+import org.mockito.Mockito;
import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.model.graphics.PolylineData;
@@ -14,77 +15,71 @@ import lcsb.mapviewer.model.map.species.GenericProtein;
public class ModulationTest {
- @Before
- public void setUp() throws Exception {
- }
+ @Before
+ public void setUp() throws Exception {
+ }
- @After
- public void tearDown() throws Exception {
- }
+ @After
+ public void tearDown() throws Exception {
+ }
- @Test
- public void testSerialization() {
- try {
- SerializationUtils.serialize(new Modulation());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testSerialization() {
+ try {
+ SerializationUtils.serialize(new Modulation());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor() {
- try {
- Modulation modifier = new Modulation(new GenericProtein("unk_id"));
- assertNotNull(modifier);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor() {
+ try {
+ Modulation modifier = new Modulation(new GenericProtein("unk_id"));
+ assertNotNull(modifier);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor2() {
- try {
- Modulation modifier = new Modulation(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- Modulation modifier2 = new Modulation(modifier);
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor2() {
+ try {
+ Modulation modifier = new Modulation(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ Modulation modifier2 = new Modulation(modifier);
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopyInvalid() {
- try {
- new Modulation() {
+ @Test
+ public void testCopyInvalid() {
+ try {
+ Mockito.mock(Modulation.class, Mockito.CALLS_REAL_METHODS).copy();
+ fail("Exception expected");
+ } catch (NotImplementedException e) {
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- /**
- *
- */
- private static final long serialVersionUID = 1L;
- }.copy();
- fail("Exception expected");
- } catch (NotImplementedException e) {
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
-
- @Test
- public void testCopy() {
- try {
- Modulation modifier = new Modulation(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- Modulation modifier2 = modifier.copy();
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopy() {
+ try {
+ Modulation modifier = new Modulation(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ Modulation modifier2 = modifier.copy();
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
}
diff --git a/model/src/test/java/lcsb/mapviewer/model/map/modifier/PhysicalStimulationTest.java b/model/src/test/java/lcsb/mapviewer/model/map/modifier/PhysicalStimulationTest.java
index 106238c323..29821f55d0 100644
--- a/model/src/test/java/lcsb/mapviewer/model/map/modifier/PhysicalStimulationTest.java
+++ b/model/src/test/java/lcsb/mapviewer/model/map/modifier/PhysicalStimulationTest.java
@@ -7,6 +7,7 @@ import org.apache.commons.lang3.SerializationUtils;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
+import org.mockito.Mockito;
import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.model.graphics.PolylineData;
@@ -14,77 +15,71 @@ import lcsb.mapviewer.model.map.species.GenericProtein;
public class PhysicalStimulationTest {
- @Before
- public void setUp() throws Exception {
- }
+ @Before
+ public void setUp() throws Exception {
+ }
- @After
- public void tearDown() throws Exception {
- }
+ @After
+ public void tearDown() throws Exception {
+ }
- @Test
- public void testSerialization() {
- try {
- SerializationUtils.serialize(new PhysicalStimulation());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testSerialization() {
+ try {
+ SerializationUtils.serialize(new PhysicalStimulation());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor() {
- try {
- PhysicalStimulation modifier = new PhysicalStimulation(new GenericProtein("unk_id"));
- assertNotNull(modifier);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor() {
+ try {
+ PhysicalStimulation modifier = new PhysicalStimulation(new GenericProtein("unk_id"));
+ assertNotNull(modifier);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor2() {
- try {
- PhysicalStimulation modifier = new PhysicalStimulation(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- PhysicalStimulation modifier2 = new PhysicalStimulation(modifier);
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor2() {
+ try {
+ PhysicalStimulation modifier = new PhysicalStimulation(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ PhysicalStimulation modifier2 = new PhysicalStimulation(modifier);
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopyInvalid() {
- try {
- new PhysicalStimulation() {
+ @Test
+ public void testCopyInvalid() {
+ try {
+ Mockito.mock(PhysicalStimulation.class, Mockito.CALLS_REAL_METHODS).copy();
+ fail("Exception expected");
+ } catch (NotImplementedException e) {
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- /**
- *
- */
- private static final long serialVersionUID = 1L;
- }.copy();
- fail("Exception expected");
- } catch (NotImplementedException e) {
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
-
- @Test
- public void testCopy() {
- try {
- PhysicalStimulation modifier = new PhysicalStimulation(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- PhysicalStimulation modifier2 = modifier.copy();
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopy() {
+ try {
+ PhysicalStimulation modifier = new PhysicalStimulation(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ PhysicalStimulation modifier2 = modifier.copy();
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
}
diff --git a/model/src/test/java/lcsb/mapviewer/model/map/modifier/TriggerTest.java b/model/src/test/java/lcsb/mapviewer/model/map/modifier/TriggerTest.java
index f0d3ebb23b..d6b71b5fda 100644
--- a/model/src/test/java/lcsb/mapviewer/model/map/modifier/TriggerTest.java
+++ b/model/src/test/java/lcsb/mapviewer/model/map/modifier/TriggerTest.java
@@ -7,6 +7,7 @@ import org.apache.commons.lang3.SerializationUtils;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
+import org.mockito.Mockito;
import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.model.graphics.PolylineData;
@@ -14,77 +15,71 @@ import lcsb.mapviewer.model.map.species.GenericProtein;
public class TriggerTest {
- @Before
- public void setUp() throws Exception {
- }
+ @Before
+ public void setUp() throws Exception {
+ }
- @After
- public void tearDown() throws Exception {
- }
+ @After
+ public void tearDown() throws Exception {
+ }
- @Test
- public void testSerialization() {
- try {
- SerializationUtils.serialize(new Trigger());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testSerialization() {
+ try {
+ SerializationUtils.serialize(new Trigger());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor() {
- try {
- Trigger modifier = new Trigger(new GenericProtein("unk_id"));
- assertNotNull(modifier);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor() {
+ try {
+ Trigger modifier = new Trigger(new GenericProtein("unk_id"));
+ assertNotNull(modifier);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor2() {
- try {
- Trigger modifier = new Trigger(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- Trigger modifier2 = new Trigger(modifier);
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor2() {
+ try {
+ Trigger modifier = new Trigger(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ Trigger modifier2 = new Trigger(modifier);
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopy() {
- try {
- Trigger modifier = new Trigger(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- Trigger modifier2 = modifier.copy();
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopy() {
+ try {
+ Trigger modifier = new Trigger(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ Trigger modifier2 = modifier.copy();
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopyInvalid() {
- try {
- new Trigger() {
-
- /**
- *
- */
- private static final long serialVersionUID = 1L;
- }.copy();
- fail("Exception expected");
- } catch (NotImplementedException e) {
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopyInvalid() {
+ try {
+ Mockito.mock(Trigger.class, Mockito.CALLS_REAL_METHODS).copy();
+ fail("Exception expected");
+ } catch (NotImplementedException e) {
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
}
diff --git a/model/src/test/java/lcsb/mapviewer/model/map/modifier/UnknownCatalysisTest.java b/model/src/test/java/lcsb/mapviewer/model/map/modifier/UnknownCatalysisTest.java
index dcf4d289ae..31c679e2bf 100644
--- a/model/src/test/java/lcsb/mapviewer/model/map/modifier/UnknownCatalysisTest.java
+++ b/model/src/test/java/lcsb/mapviewer/model/map/modifier/UnknownCatalysisTest.java
@@ -7,6 +7,7 @@ import org.apache.commons.lang3.SerializationUtils;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
+import org.mockito.Mockito;
import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.model.graphics.PolylineData;
@@ -14,77 +15,71 @@ import lcsb.mapviewer.model.map.species.GenericProtein;
public class UnknownCatalysisTest {
- @Before
- public void setUp() throws Exception {
- }
+ @Before
+ public void setUp() throws Exception {
+ }
- @After
- public void tearDown() throws Exception {
- }
+ @After
+ public void tearDown() throws Exception {
+ }
- @Test
- public void testSerialization() {
- try {
- SerializationUtils.serialize(new UnknownCatalysis());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testSerialization() {
+ try {
+ SerializationUtils.serialize(new UnknownCatalysis());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor() {
- try {
- UnknownCatalysis modifier = new UnknownCatalysis(new GenericProtein("unk_id"));
- assertNotNull(modifier);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor() {
+ try {
+ UnknownCatalysis modifier = new UnknownCatalysis(new GenericProtein("unk_id"));
+ assertNotNull(modifier);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor2() {
- try {
- UnknownCatalysis modifier = new UnknownCatalysis(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- UnknownCatalysis modifier2 = new UnknownCatalysis(modifier);
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor2() {
+ try {
+ UnknownCatalysis modifier = new UnknownCatalysis(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ UnknownCatalysis modifier2 = new UnknownCatalysis(modifier);
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopy() {
- try {
- UnknownCatalysis modifier = new UnknownCatalysis(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- UnknownCatalysis modifier2 = modifier.copy();
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopy() {
+ try {
+ UnknownCatalysis modifier = new UnknownCatalysis(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ UnknownCatalysis modifier2 = modifier.copy();
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopyInvalid() {
- try {
- new UnknownCatalysis() {
-
- /**
- *
- */
- private static final long serialVersionUID = 1L;
- }.copy();
- fail("Exception expected");
- } catch (NotImplementedException e) {
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopyInvalid() {
+ try {
+ Mockito.mock(UnknownCatalysis.class, Mockito.CALLS_REAL_METHODS).copy();
+ fail("Exception expected");
+ } catch (NotImplementedException e) {
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
}
diff --git a/model/src/test/java/lcsb/mapviewer/model/map/modifier/UnknownInhibitionTest.java b/model/src/test/java/lcsb/mapviewer/model/map/modifier/UnknownInhibitionTest.java
index c50a4c87e2..33de793ebd 100644
--- a/model/src/test/java/lcsb/mapviewer/model/map/modifier/UnknownInhibitionTest.java
+++ b/model/src/test/java/lcsb/mapviewer/model/map/modifier/UnknownInhibitionTest.java
@@ -7,6 +7,7 @@ import org.apache.commons.lang3.SerializationUtils;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
+import org.mockito.Mockito;
import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.model.graphics.PolylineData;
@@ -14,77 +15,71 @@ import lcsb.mapviewer.model.map.species.GenericProtein;
public class UnknownInhibitionTest {
- @Before
- public void setUp() throws Exception {
- }
+ @Before
+ public void setUp() throws Exception {
+ }
- @After
- public void tearDown() throws Exception {
- }
+ @After
+ public void tearDown() throws Exception {
+ }
- @Test
- public void testSerialization() {
- try {
- SerializationUtils.serialize(new UnknownInhibition());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testSerialization() {
+ try {
+ SerializationUtils.serialize(new UnknownInhibition());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor() {
- try {
- UnknownInhibition modifier = new UnknownInhibition(new GenericProtein("unk_id"));
- assertNotNull(modifier);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor() {
+ try {
+ UnknownInhibition modifier = new UnknownInhibition(new GenericProtein("unk_id"));
+ assertNotNull(modifier);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor2() {
- try {
- UnknownInhibition modifier = new UnknownInhibition(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- UnknownInhibition modifier2 = new UnknownInhibition(modifier);
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor2() {
+ try {
+ UnknownInhibition modifier = new UnknownInhibition(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ UnknownInhibition modifier2 = new UnknownInhibition(modifier);
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopy() {
- try {
- UnknownInhibition modifier = new UnknownInhibition(new GenericProtein("unk_id"));
- modifier.setLine(new PolylineData());
- UnknownInhibition modifier2 = modifier.copy();
- assertNotNull(modifier2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopy() {
+ try {
+ UnknownInhibition modifier = new UnknownInhibition(new GenericProtein("unk_id"));
+ modifier.setLine(new PolylineData());
+ UnknownInhibition modifier2 = modifier.copy();
+ assertNotNull(modifier2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopyInvalid() {
- try {
- new UnknownInhibition() {
-
- /**
- *
- */
- private static final long serialVersionUID = 1L;
- }.copy();
- fail("Exception expected");
- } catch (NotImplementedException e) {
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopyInvalid() {
+ try {
+ Mockito.mock(UnknownInhibition.class, Mockito.CALLS_REAL_METHODS).copy();
+ fail("Exception expected");
+ } catch (NotImplementedException e) {
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
}
diff --git a/model/src/test/java/lcsb/mapviewer/model/map/reaction/ModifierTest.java b/model/src/test/java/lcsb/mapviewer/model/map/reaction/ModifierTest.java
index 4730c68acd..bf8bfdeb93 100644
--- a/model/src/test/java/lcsb/mapviewer/model/map/reaction/ModifierTest.java
+++ b/model/src/test/java/lcsb/mapviewer/model/map/reaction/ModifierTest.java
@@ -7,72 +7,67 @@ import org.apache.commons.lang3.SerializationUtils;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
+import org.mockito.Mockito;
import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.model.graphics.PolylineData;
public class ModifierTest {
- @Before
- public void setUp() throws Exception {
- }
+ @Before
+ public void setUp() throws Exception {
+ }
- @After
- public void tearDown() throws Exception {
- }
+ @After
+ public void tearDown() throws Exception {
+ }
- @Test
- public void testSerialization() {
- try {
- SerializationUtils.serialize(new Modifier());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testSerialization() {
+ try {
+ SerializationUtils.serialize(new Modifier());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testConstructor() {
- try {
- Modifier original = new Modifier();
- original.setLine(new PolylineData());
- Modifier modifier = new Modifier(original);
- assertNotNull(modifier);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testConstructor() {
+ try {
+ Modifier original = new Modifier();
+ original.setLine(new PolylineData());
+ Modifier modifier = new Modifier(original);
+ assertNotNull(modifier);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testCopy() {
- try {
- Modifier original = new Modifier();
- original.setLine(new PolylineData());
- Modifier modifier = original.copy();
- assertNotNull(modifier);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testCopy() {
+ try {
+ Modifier original = new Modifier();
+ original.setLine(new PolylineData());
+ Modifier modifier = original.copy();
+ assertNotNull(modifier);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
- @Test
- public void testInvalidCopy() {
- try {
- new Modifier() {
-
- /**
- *
- */
- private static final long serialVersionUID = 1L;
- }.copy();
- fail("Exception expected");
- } catch (NotImplementedException e) {
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Test
+ public void testInvalidCopy() {
+ try {
+ Mockito.mock(Modifier.class, Mockito.CALLS_REAL_METHODS).copy();
+ fail("Exception expected");
+ } catch (NotImplementedException e) {
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
}
--
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