diff --git a/CHANGELOG b/CHANGELOG
index 6a5feaa4ff85e0e8b997a8beb6dba28d91b64c8f..ef1639edd0e6af1815ffb29ed9c7f6be315fc237 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -1,3 +1,9 @@
+minerva (17.0.0~beta.6) unstable; urgency=medium
+ * Bug fix (regression): when caching data on project upload annotation links
+ were not present (#2012)
+
+ -- Piotr Gawron <piotr.gawron@uni.lu> Thu, 14 Mar 2024 10:00:00 +0200
+
minerva (17.0.0~beta.5) unstable; urgency=medium
* Small improvement (regression): additional info about archive/revive
project action (#1971)
diff --git a/CellDesigner-plugin/pom.xml b/CellDesigner-plugin/pom.xml
index 4af37e4b5cc93d4784b667448bb8a5ba7c88dd37..05f57537deb87ddffd6be743c60152c07e2e24ce 100644
--- a/CellDesigner-plugin/pom.xml
+++ b/CellDesigner-plugin/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>CellDesigner-plugin</artifactId>
<!-- dependency from the MapViewer model -->
@@ -50,19 +50,19 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>commons</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
diff --git a/annotation/pom.xml b/annotation/pom.xml
index dd5846141d187761a169aee42e6db5db04ca791d..05f358520aab6ae468f5a50dca5c435e7e53dcd4 100644
--- a/annotation/pom.xml
+++ b/annotation/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>annotation</artifactId>
<name>Annotation module</name>
@@ -19,7 +19,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- dependency from the MapViewer dao -->
@@ -27,7 +27,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>persist</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- dependency from the MapViewer cell designer parser (we need access
@@ -35,13 +35,13 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- Log4J2 -->
diff --git a/commons/pom.xml b/commons/pom.xml
index 6a7a76f72426adb7c60576526cdc7030ed6ebd11..d7c3aa904d0b623f66de4fd903b650f1dc846e94 100644
--- a/commons/pom.xml
+++ b/commons/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>commons</artifactId>
<name>Mapviewer commons</name>
diff --git a/converter-CellDesigner/pom.xml b/converter-CellDesigner/pom.xml
index 42146cad941ca86f3667be6afb80a2eb359b3a3e..a7ec50143ffe829c0ce90f83326654dbcbd7a7d4 100644
--- a/converter-CellDesigner/pom.xml
+++ b/converter-CellDesigner/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>converter-CellDesigner</artifactId>
<name>CellDesigner converter</name>
@@ -17,13 +17,13 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- Log4J2 -->
diff --git a/converter-SBGNML/pom.xml b/converter-SBGNML/pom.xml
index 745e3e33102b419bed6ae00417f0fdd53c90c04c..084fbab2223538e0696e74c57aeb5f2a7a827235 100644
--- a/converter-SBGNML/pom.xml
+++ b/converter-SBGNML/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>converter-SBGNML</artifactId>
@@ -20,26 +20,26 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>persist</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-graphics</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
diff --git a/converter-graphics/pom.xml b/converter-graphics/pom.xml
index 5e2c828080d42bc967ba5eb57d374cfc8d0aa499..d62cb10b5250ce825141f9ce55cb99d214a00f15 100644
--- a/converter-graphics/pom.xml
+++ b/converter-graphics/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>converter-graphics</artifactId>
<name>MapViewer graphics converter</name>
@@ -18,13 +18,13 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model-command</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- Log4J2 -->
diff --git a/converter-sbml/pom.xml b/converter-sbml/pom.xml
index d4134d7a8bc09ccb7887a94594f250d2522f6234..f3159fe05f921a58fc818dc0817408fc33dcf762 100644
--- a/converter-sbml/pom.xml
+++ b/converter-sbml/pom.xml
@@ -7,7 +7,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>converter-sbml</artifactId>
<name>converter-sbml</name>
@@ -40,22 +40,22 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model-command</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- Log4J2 -->
@@ -167,7 +167,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-graphics</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
<scope>test</scope>
</dependency>
diff --git a/converter/pom.xml b/converter/pom.xml
index 1461e781c80b78298dbc1b49f6eda2c05e2344fc..c208389009ab0545d8f1928a65735606f9b510b3 100644
--- a/converter/pom.xml
+++ b/converter/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>converter</artifactId>
@@ -15,7 +15,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>xerces</groupId>
diff --git a/frontend-js/pom.xml b/frontend-js/pom.xml
index a321af8e8a4658378d6dc6d6c31e3ebb7ae63694..93019aa996d26c2d1f549be76558635f7124e331 100644
--- a/frontend-js/pom.xml
+++ b/frontend-js/pom.xml
@@ -7,7 +7,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>frontend-js</artifactId>
<name>frontend-js</name>
diff --git a/model-command/pom.xml b/model-command/pom.xml
index 111638e5499161898f0f56c2f665155a6c28223f..14cab75758645387d89ff2d54a5612d230112891 100644
--- a/model-command/pom.xml
+++ b/model-command/pom.xml
@@ -3,7 +3,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>model-command</artifactId>
<name>Model commands</name>
@@ -16,7 +16,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
@@ -24,7 +24,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- Log4J2-->
diff --git a/model/pom.xml b/model/pom.xml
index 9f98485334dc45cc1149a6605dbc8ad4c2b89030..1692eb32df4c903cb477b8495b6b090bc9a39466 100644
--- a/model/pom.xml
+++ b/model/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>model</artifactId>
<name>model MapViewer</name>
@@ -15,7 +15,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>commons</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- Java xml serialization -->
diff --git a/pathvisio/pom.xml b/pathvisio/pom.xml
index 1a86ce03bdd451b2e65bfe082dcfe6db8e41e7c8..74d4dffc930075de9d3db3fda4d5b48887b25932 100644
--- a/pathvisio/pom.xml
+++ b/pathvisio/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>pathvisio</artifactId>
<name>Pathvisio plugin</name>
@@ -77,26 +77,26 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-graphics</artifactId>
<scope>test</scope>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model-command</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- Log4J2 -->
diff --git a/persist/pom.xml b/persist/pom.xml
index 1a7672fe2a9285689a5f42992f1b7b0af985e36e..317c5dc02386f1a85e17dd05fb69fcd178c3c839 100644
--- a/persist/pom.xml
+++ b/persist/pom.xml
@@ -6,7 +6,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>persist</artifactId>
@@ -26,7 +26,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- Hibernate -->
diff --git a/pom.xml b/pom.xml
index 30e2f5f5990a70ee236322630cf3763de74514bd..6deebb69dbb6589d76bbecf0e99de84efcc53365 100644
--- a/pom.xml
+++ b/pom.xml
@@ -6,7 +6,7 @@
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
<packaging>pom</packaging>
<name>parent MapViewer</name>
diff --git a/rest-api/pom.xml b/rest-api/pom.xml
index f31b282757d091df58ed6faba5192d061c79caba..4adae49b7dd7af63df9103b777ed9424f11e06ce 100644
--- a/rest-api/pom.xml
+++ b/rest-api/pom.xml
@@ -7,7 +7,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>rest-api</artifactId>
<name>rest-api</name>
@@ -19,19 +19,19 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>service</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>pathvisio</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
diff --git a/service/pom.xml b/service/pom.xml
index 0c1f1a12ebc1789eaefa39aab291fb20004f5374..0c2f4e033a8ed12f53528ad14169b3db896328c8 100644
--- a/service/pom.xml
+++ b/service/pom.xml
@@ -6,7 +6,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>service</artifactId>
@@ -19,7 +19,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- dependency from the MapViewer dao -->
@@ -27,47 +27,47 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>persist</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model-command</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>annotation</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- dependency from the MapViewer cell designer parser -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- dependency from the MapViewer SBGN-ML parser -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-SBGNML</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- dependency from the MapViewer graphics converter -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-graphics</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- dependency from the SBML parser -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-sbml</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<!-- Log4J2 -->
diff --git a/service/src/main/java/lcsb/mapviewer/services/impl/ProjectService.java b/service/src/main/java/lcsb/mapviewer/services/impl/ProjectService.java
index bb4178cd833b3b4565893e8d4492688bbba48865..92c1309a8db64f9d4102067b5fa42a36e68fbc4a 100644
--- a/service/src/main/java/lcsb/mapviewer/services/impl/ProjectService.java
+++ b/service/src/main/java/lcsb/mapviewer/services/impl/ProjectService.java
@@ -432,9 +432,8 @@ public class ProjectService implements IProjectService {
if (params.isCacheModel()) {
self.cacheData(params.getProjectId());
- } else {
- self.createRefreshMiriamInfoJobs(params.getProjectId());
}
+ self.createRefreshMiriamInfoJobs(params.getProjectId());
self.updateProjectStatus(params.getProjectId(), ProjectStatus.DONE, IProgressUpdater.MAX_PROGRESS);
if (params.getNotifyEmail() != null && !params.getNotifyEmail().equals("")) {
diff --git a/web/pom.xml b/web/pom.xml
index a965995928a4a20ffc84dae41b6d1beb5b2729e2..c0ebbb3c9ef1d1998be57b12ec06329aa5e9777a 100644
--- a/web/pom.xml
+++ b/web/pom.xml
@@ -6,7 +6,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</parent>
<artifactId>web</artifactId>
<packaging>jar</packaging>
@@ -36,19 +36,19 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>service</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>rest-api</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>frontend-js</artifactId>
- <version>17.0.0~beta.5</version>
+ <version>17.0.0~beta.6</version>
</dependency>
<dependency>