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Commit 7b79fe7b authored by Piotr Gawron's avatar Piotr Gawron
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changelog updated

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CHANGELOG
View file @ 7b79fe7b
minerva (16.0.0~beta.3) stable; urgency=medium
* Bug fix: show genetic data overlays in InfoWindow even when no data is
available (#1562)
* Bug fix: speed of opening map is improved (#1558)
* Bug fix: typo (#1555)
* Bug fix: gene mapping with empty url caused issues when opening info window
(#1557)
* Bug fix: issues with exporting map to file or image fixed (#1561, #1560,
#1559)
* Bug fix: sometimes wrong icn numbers were attached to search results
(#1556)
-- Piotr Gawron <piotr.gawron@uni.lu> Mon, 27 Sep 2021 14:00:00 +0200
minerva (16.0.0~beta.2) stable; urgency=medium
* Small improvement: backgrounds are separated from general overlays (#1532)
* Small improvement: layout of pin popup window is slitghly improved (#1493)
* Small improvement: search results are grouped by submap with hits (#1505)
* Bug fix: correct background order for old projects restored (#1533)
* Bug fix: search chemicals by target returned chemicals not bounded by
disease (#1535)
* Bug fix: problem with export map with submaps fixed (#1540)
* Bug fix: clear does not show warning about missing disease ID (#1541)
* Bug fix: removing user removed backgrounds in projects created by user
(#1527)
* Bug fix: removing background did not remove images from server (#1526)
* Bug fix: two genomic data overlay with two different reference genomes
caused issue (#1546)
* Bug fix: search results were limited to 10 elements
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 9 Sep 2021 11:00:00 +0200
minerva (16.0.0~beta.1) stable; urgency=medium
* Backward incompatibility: layout parameter in minerva url is not supported
anymore
* Small improvement: info about background and data overlays is separated in
edit project panel (#1515)
* Bug fix: there was issue with updating data overlay in admin panel "Unknown
parameter: defaultOverlay" (#1489)
* Bug fix: data overlays uploaded in complex map were not processed properly
(#1485)
* Bug fix: sort of the overlays in General Overlays in the left panel was
wrong (#1486)
* Bug fix: overlay owner must be defined (#1488)
* Bug fix: there was issue when upgrading backgrounds in admin panel (#1514)
* Bug fix: there was issue when editing and saving data overlay (#1494)
* Bug fix: problem with adding comments (#1495)
* Bug fix: project with invalid data might cause problem on
create/update/delete (#1509)
* Bug fix: exporting part of map as image caused removing not drawn species
from the database (#1508)
* Bug fix: adding user with already existing login and changing his
privileges occured with error (#1507)
* Bug fix: export model as model could cause an issue (#1500, #1502)
* Bug fix: problem with export as image with data overlays (#1503, #1498,
#1496)
* Bug fix: chrome autofill is disabled for "Search: " in admin panel tables
* Bug fix: top map was not selected properly sometimes (#1487)
* Bug fix: data overlays in comlex upload prevented error to be propagated
to user (#1499)
* Bug fix: searching for all chemicals by target did not work (#1490)
* Bug fix: searching by chemical/drug/mirna in left panel focus the proper
tab in the InfoWindow (#1492)
* Bug fix: search tab becomes active when drug/chemical/mirna result are
available (#1491)
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 25 Jun 2021 08:00:00 +0200
minerva (16.0.0~beta.0) stable; urgency=medium
minerva (16.0.0) stable; urgency=medium
* Backward incompatibility: debian package cannot be upgraded from version
prior to 12.1.0 (#1464)
* Small improvement: artifitial source and sink is created separately for
each uncomplete reaction (#1475)
* Small improvement: homomultimer information is provided in API (#1468)
* Small improvement: missing info about species for SBML parsing warning
(#1472)
* Small improvement: information about dimer in sbgn is provided only once
if the information is duplicated in sbgn data (#1358)
* Small improvement: glyph quality is improved (#1458)
* Small improvement: search results are group by diagram (#1451)
* Small improvement: "Failed to fetch" errors are reported in a way that
suggest retrying before submitting error report (#738)
* Small improvement: reverse search pop-up reorganized (#1366)
* Bug fix: arrows without a "process" box had an irregular empty space in
their lines (#1471)
* Bug fix: when selecting drug in the alias window the input text is updated
(#1365)
* Bug fix: zoom slider was not updated when clicking on +/- in genome browser
(#1064)
* Bug fix: there was no possibility to see gene variants
(regression 16.0.0~alpha.1)
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 30 Apr 2021 16:30:00 +0200
minerva (16.0.0~alpha.1) stable; urgency=medium
* Backward incompatibility: layout parameter in minerva url is not supported
anymore
* Backward incompatibility: deprecated columns in data overlays are no longer
supported (#958)
* Backward incompatibility: comment does not contain name anymore (#1070)
......@@ -100,11 +10,35 @@ minerva (16.0.0~alpha.1) stable; urgency=medium
(#1007)
* Backward incompatibility: elements in data overlay are returned differently
when using data overlay API (#1007)
* Improvement: performance improved - map is available immediatelly after
* Backward incompatibility: deprecated columns in data overlay table are no
longer supported: reverseReaction, reaction_identifier, reactionIdentifier,
reference_genome_type, reference_genome_version, allel_frequency, lineWidth,
elementIdentifier, references, model_name (#958)
* Backward incompatibility: information about old search queries removed from
database (it can be still accessed using proper log managing)
* Improvement: automatically generated API documentation available in the
package (#1016)
* Improvement: performance improved - map is available immediately after
tomcat starts (#1007)
* Improvement: minerva does not require huge amounts of memory anymore
(#1007)
* Improvement: data overlay allows for multiple hits per element (#1007)
* Small improvement: backgrounds are separated from general overlays (#1532,
#1515)
* Small improvement: layout of pin popup window is slightly improved (#1493)
* Small improvement: search results are grouped by submap with hits (#1505)
* Small improvement: artificial source and sink is created separately for
each incomplete reaction (#1475)
* Small improvement: homomultimer information is provided in API (#1468)
* Small improvement: missing info about species for SBML parsing warning
(#1472)
* Small improvement: information about dimer in sbgn is provided only once
if the information is duplicated in sbgn data (#1358)
* Small improvement: glyph quality is improved (#1458)
* Small improvement: search results are group by diagram (#1451)
* Small improvement: "Failed to fetch" errors are reported in a way that
suggest retrying before submitting error report (#738)
* Small improvement: reverse search pop-up reorganized (#1366)
* Small improvement: "dbSNP", "IMGT HLA", "PMC", "Complex Portal" identifiers
are supported (#1452, #1450, #1420)
* Small improvement: information about perfect search are stored in the url
......@@ -120,28 +54,32 @@ minerva (16.0.0~alpha.1) stable; urgency=medium
(#1456)
* Small improvement: SBML render contains process rectangle for reactions
(#1457)
* Bug fix: show genetic data overlays in InfoWindow even when no data is
available (#1562)
* Bug fix: gene mapping with empty url caused issues when opening info window
(#1557)
* Bug fix: clear does not show warning about missing disease ID (#1541)
* Bug fix: two genomic data overlay with two different reference genomes
caused issue (#1546)
* Bug fix: search results were limited to 10 elements
* Bug fix: Chrome autofill is disabled for "Search: " in admin panel tables
* Bug fix: search tab becomes active when drug/chemical/mirna result are
available (#1491)
* Bug fix: arrows without a "process" box had an irregular empty space in
their lines (#1471)
* Bug fix: when selecting drug in the alias window the input text is updated
(#1365)
* Bug fix: zoom slider was not updated when clicking on +/- in genome browser
(#1064)
* Bug fix: refreshing page after removing last project on the page redirect to
proper page (#1051)
* Bug fix: removing plugin that does not exist anymore does not raise an error
(#1289)
* Bug fix: broken overlays crashed minerva upgrade (#1453)
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 19 Mar 2021 10:00:00 +0200
minerva (16.0.0~alpha.0) stable; urgency=medium
* Backward incompatibility: deprecated columns in data overlay table are no
longer supported: reverseReaction, reaction_identifier, reactionIdentifier,
reference_genome_type, reference_genome_version, allel_frequency, lineWidth,
elementIdentifier, references, model_name (#958)
* Backward incompatibility: information about old search queries removed from
database (it can be still accessed using proper log managing)
* Improvement: automatically generated API documentation available in the
package (#1016)
* Bug fix: md5 hash function of plugin was not computed properly
* Bug fix: exported gpml for every compartment contained list of species name
in the comment section
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 27 Aug 2020 13:00:00 +0200
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 29 Oct 2021 13:00:00 +0200
minerva (15.1.4) stable; urgency=medium
* Bug fix: structural state information data was not available for complexes
......
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