diff --git a/frontend-js/src/main/js/map/CustomMap.js b/frontend-js/src/main/js/map/CustomMap.js
index 218d45584ca60cba2ca66905a24b9c7d3c33214b..3f80768a6e1cfd2bb3ac5ccb7a44ebb756e4a87f 100644
--- a/frontend-js/src/main/js/map/CustomMap.js
+++ b/frontend-js/src/main/js/map/CustomMap.js
@@ -648,12 +648,11 @@ CustomMap.prototype.refreshInfoWindows = function () {
};
/**
- * Opens {@link AliasInfoWindow} for an {@link Alias} in a given model/submodel.
+ * Opens {@link AliasInfoWindow} for an {@link Alias}.
*
- * @param aliasId
- * identifier of {@link Alias}
- * @param modelId
- * identifier of {@link AbstractCustomMap}
+ * @param alias
+ * {@link Alias}
+ * @param marker google.maps.Marker object
*/
CustomMap.prototype.openInfoWindowForAlias = function (alias, marker) {
logger.debug("Opening info window for alias: " + alias.getId() + ", model: " + alias.getModelId());
@@ -664,10 +663,9 @@ CustomMap.prototype.openInfoWindowForAlias = function (alias, marker) {
/**
* Renders markers, lines, etc. for elements highlighted in OverlayCollection.
*
- * @param overlayCollection
- * {@link OverlayCollection} to be processed
- * @param fitBounds
- * <code>true</code> if the borders should fit bounds after creating
+ * @param params: {overlayCollection, fitBounds}
+ * overlayCollection - to be processed
+ * fitBounds - <code>true</code> if the borders should fit bounds after creating
* all elements
*/
CustomMap.prototype.renderOverlayCollection = function (params) {
@@ -678,29 +676,19 @@ CustomMap.prototype.renderOverlayCollection = function (params) {
var elements;
var markers = [];
+ var submaps = self.getSubmaps().concat([self]);
+
return overlayCollection.getIdentifiedElements().then(function (identifiedElements) {
elements = identifiedElements;
-
- return Promise.each(elements, function (element) {
- var icon = element.getIcon();
- if (icon !== null && icon !== undefined) {
- return self.getSubmapById(element.getModelId()).getMarkerSurfaceCollection().createMarkerForDbOverlay(element, overlayCollection).then(function (marker) {
- markers.push(marker);
- });
- } else {
- return self.getSubmapById(element.getModelId()).getMarkerSurfaceCollection().createSurfaceForDbOverlay(element, overlayCollection).then(function (mapOverlay) {
- markers.push(mapOverlay);
- });
- }
- });
- }).then(function () {
-
- self.getMarkerSurfaceCollection().removeUnmodifiedMarkersAndSurfaces(markers, overlayCollection);
- var submaps = self.getSubmaps();
+ var promises = [];
for (var i = 0; i < submaps.length; i++) {
- submaps[i].getMarkerSurfaceCollection().removeUnmodifiedMarkersAndSurfaces(markers, overlayCollection);
+ promises.push(submaps[i].getMarkerSurfaceCollection().renderOverlay(identifiedElements, overlayCollection));
+ }
+ return Promise.all(promises);
+ }).then(function (mapMarkers) {
+ for (var i = 0; i < mapMarkers.length; i++) {
+ markers = markers.concat(mapMarkers[i]);
}
-
return Promise.each(elements, function (element) {
var infoWindow = self.getInfoWindowForIdentifiedElement(element);
if (infoWindow !== null && infoWindow !== undefined) {
@@ -711,9 +699,8 @@ CustomMap.prototype.renderOverlayCollection = function (params) {
});
}).then(function () {
if (elements.length > 0 && fitBounds) {
- self.fitBounds(markers);
- for (var j = 0; j < self.submaps.length; j++) {
- self.submaps[j].fitBounds(markers);
+ for (var j = 0; j < submaps.length; j++) {
+ submaps[j].fitBounds(markers);
}
}
});
diff --git a/frontend-js/src/main/js/map/data/PointData.js b/frontend-js/src/main/js/map/data/PointData.js
index 2d4ed59b5654fa27b740b06ea224b5d64db83991..f12fc80009fb740ef5c3c15f7b14f4141f4fbea2 100644
--- a/frontend-js/src/main/js/map/data/PointData.js
+++ b/frontend-js/src/main/js/map/data/PointData.js
@@ -44,4 +44,8 @@ PointData.prototype.getModelId = function() {
return this._modelId;
};
+PointData.prototype.isComplete = function() {
+ return true;
+};
+
module.exports = PointData;
diff --git a/frontend-js/src/main/js/map/data/Reaction.js b/frontend-js/src/main/js/map/data/Reaction.js
index ba28f59d4b30d88827268533f8f5b03f28905806..e43e94c88bc5b43b664588cfa70e14d24d90645d 100644
--- a/frontend-js/src/main/js/map/data/Reaction.js
+++ b/frontend-js/src/main/js/map/data/Reaction.js
@@ -9,7 +9,7 @@ var logger = require('../../logger');
/**
* Class representing reaction data.
- *
+ *
* @param javaObject
* object de-serialized from ajax query to the server side
*/
@@ -55,11 +55,11 @@ function Reaction(javaObject) {
Reaction.prototype = Object.create(BioEntity.prototype);
Reaction.prototype.constructor = Reaction;
-Reaction.prototype.getCenter = function() {
+Reaction.prototype.getCenter = function () {
return this._center;
};
-Reaction.prototype.getLines = function() {
+Reaction.prototype.getLines = function () {
var result = [];
result = result.concat(this.startLines);
result = result.concat(this.endLines);
@@ -67,24 +67,24 @@ Reaction.prototype.getLines = function() {
return result;
};
-Reaction.prototype.getMidLines = function() {
+Reaction.prototype.getMidLines = function () {
return this.midLines;
};
-Reaction.prototype.getStartLines = function() {
+Reaction.prototype.getStartLines = function () {
return this.startLines;
};
-Reaction.prototype.getEndLines = function() {
+Reaction.prototype.getEndLines = function () {
return this.endLines;
};
-Reaction.prototype.setCenter = function(center) {
+Reaction.prototype.setCenter = function (center) {
if (center === null || center === undefined) {
throw new Error("Setting undefined center: ", center);
}
this._center = center;
};
-Reaction.prototype.update = function(javaObject) {
+Reaction.prototype.update = function (javaObject) {
if (javaObject.reactionId === undefined) {
return;
}
@@ -123,85 +123,87 @@ Reaction.prototype.update = function(javaObject) {
this.setIsComplete(true);
};
-Reaction.prototype.isComplete = function() {
+Reaction.prototype.isComplete = function () {
var self = this;
var result = self._complete;
- var reactants = self.getReactants();
- if (reactants.length === 0) {
- result = false;
- } else {
- if (!(self.getReactants()[0] instanceof Alias)) {
+ if (result) {
+ var reactants = self.getReactants();
+ if (reactants.length === 0) {
result = false;
+ } else {
+ if (!(self.getReactants()[0] instanceof Alias)) {
+ result = false;
+ }
}
}
return result;
};
-Reaction.prototype.getReactionId = function() {
+Reaction.prototype.getReactionId = function () {
return this._reactionId;
};
-Reaction.prototype.setReactionId = function(reactionId) {
+Reaction.prototype.setReactionId = function (reactionId) {
this._reactionId = reactionId;
};
-Reaction.prototype.getMechanicalConfidenceScore = function() {
+Reaction.prototype.getMechanicalConfidenceScore = function () {
return this._mechanicalConfidenceScore;
};
-Reaction.prototype.setMechanicalConfidenceScore = function(mechanicalConfidenceScore) {
+Reaction.prototype.setMechanicalConfidenceScore = function (mechanicalConfidenceScore) {
this._mechanicalConfidenceScore = mechanicalConfidenceScore;
};
-Reaction.prototype.getLowerBound = function() {
+Reaction.prototype.getLowerBound = function () {
return this._lowerBound;
};
-Reaction.prototype.setLowerBound = function(lowerBound) {
+Reaction.prototype.setLowerBound = function (lowerBound) {
this._lowerBound = lowerBound;
};
-Reaction.prototype.getUpperBound = function() {
+Reaction.prototype.getUpperBound = function () {
return this._upperBound;
};
-Reaction.prototype.setUpperBound = function(upperBound) {
+Reaction.prototype.setUpperBound = function (upperBound) {
this._upperBound = upperBound;
};
-Reaction.prototype.setGeneProteinReaction = function(geneProteinReaction) {
+Reaction.prototype.setGeneProteinReaction = function (geneProteinReaction) {
this._geneProteinReaction = geneProteinReaction;
};
-Reaction.prototype.getGeneProteinReaction = function() {
+Reaction.prototype.getGeneProteinReaction = function () {
return this._geneProteinReaction;
};
-Reaction.prototype.setSubsystem = function(subsystem) {
+Reaction.prototype.setSubsystem = function (subsystem) {
this._subsystem = subsystem;
};
-Reaction.prototype.getSubsystem = function() {
+Reaction.prototype.getSubsystem = function () {
return this._subsystem;
};
-Reaction.prototype.getReactants = function() {
+Reaction.prototype.getReactants = function () {
return this._reactants;
};
-Reaction.prototype.setReactants = function(reactants) {
+Reaction.prototype.setReactants = function (reactants) {
this._reactants = reactants;
};
-Reaction.prototype.setProducts = function(products) {
+Reaction.prototype.setProducts = function (products) {
this._products = products;
};
-Reaction.prototype.getProducts = function() {
+Reaction.prototype.getProducts = function () {
return this._products;
};
-Reaction.prototype.getElements = function() {
+Reaction.prototype.getElements = function () {
var result = [];
result = result.concat(this.getReactants());
result = result.concat(this.getProducts());
@@ -209,11 +211,11 @@ Reaction.prototype.getElements = function() {
return result;
};
-Reaction.prototype.setModifiers = function(modifiers) {
+Reaction.prototype.setModifiers = function (modifiers) {
this._modifiers = modifiers;
};
-Reaction.prototype.getModifiers = function() {
+Reaction.prototype.getModifiers = function () {
return this._modifiers;
};
diff --git a/frontend-js/src/main/js/map/marker/MarkerSurfaceCollection.js b/frontend-js/src/main/js/map/marker/MarkerSurfaceCollection.js
index 45c6a00b411814b305cc58ec4c4d12a4912f081e..9d06b0e87abba60fc636ac728969fa776f659346 100644
--- a/frontend-js/src/main/js/map/marker/MarkerSurfaceCollection.js
+++ b/frontend-js/src/main/js/map/marker/MarkerSurfaceCollection.js
@@ -298,5 +298,34 @@ MarkerSurfaceCollection.prototype.removeUnmodifiedMarkersAndSurfaces = function
}
};
+MarkerSurfaceCollection.prototype.renderOverlay = function (allElements, overlay) {
+ var self = this;
+ var elements = [];
+ for (var i = 0; i < allElements.length; i++) {
+ if (allElements[i].getModelId() === self.getMap().getId()) {
+ elements.push(allElements[i]);
+ }
+ }
+ var markers = [];
+ //first get full data about all elements in one go (not one-by-one queries)
+ return self.getMap().getModel().getByIdentifiedElements(elements).then(function () {
+ return Promise.each(elements, function (element) {
+ var icon = element.getIcon();
+ if (icon !== null && icon !== undefined) {
+ return self.createMarkerForDbOverlay(element, overlay).then(function (marker) {
+ markers.push(marker);
+ });
+ } else {
+ return self.createSurfaceForDbOverlay(element, overlay).then(function (mapOverlay) {
+ markers.push(mapOverlay);
+ });
+ }
+
+ });
+ }).then(function () {
+ self.removeUnmodifiedMarkersAndSurfaces(markers, overlay);
+ return markers;
+ });
+};
module.exports = MarkerSurfaceCollection;
diff --git a/frontend-js/src/test/js/helper.js b/frontend-js/src/test/js/helper.js
index 6a4a9ecdb134ad2de9e69d0817cd71f7cd321387..9cd68be1cf90fd63c4078873b9e0fe2e2fe226a0 100644
--- a/frontend-js/src/test/js/helper.js
+++ b/frontend-js/src/test/js/helper.js
@@ -239,13 +239,13 @@ Helper.prototype.createIdentifiedElement = function (element) {
return new IdentifiedElement({
type: "ALIAS",
id: this.idCounter++,
- modelId: this.idCounter++,
+ modelId: this.idCounter++
});
}
return new IdentifiedElement(element);
};
-Helper.prototype.createReaction = function (map) {
+Helper.prototype.createReaction = function (map, complete) {
var mapId = null;
if (map !== undefined) {
mapId = map.getId();
@@ -277,8 +277,14 @@ Helper.prototype.createReaction = function (map) {
}],
centerPoint: new google.maps.Point(0, 0),
modelId: mapId,
- references: [],
+ references: []
});
+ if (complete) {
+ result.setIsComplete(true);
+ result.setReactants([this.createAlias(map)]);
+ result.setProducts([this.createAlias(map)]);
+ result.setModifiers([]);
+ }
return result;
};
diff --git a/frontend-js/src/test/js/map/CustomMap-test.js b/frontend-js/src/test/js/map/CustomMap-test.js
index ce9d5f9ec99f55282570d4aa9813149d4b348862..ca373d665d433c2d2abec372a944edf003186fef 100644
--- a/frontend-js/src/test/js/map/CustomMap-test.js
+++ b/frontend-js/src/test/js/map/CustomMap-test.js
@@ -274,7 +274,7 @@ describe('CustomMap', function () {
it("alias re-rendering with different icon", function () {
var map = helper.createCustomMap();
- var reaction = helper.createReaction(map);
+ var reaction = helper.createReaction(map, true);
var alias = helper.createAlias(map);
map.getModel().addAlias(alias);
map.getModel().addReaction(reaction);
@@ -366,7 +366,7 @@ describe('CustomMap', function () {
it("for reaction", function () {
var map = helper.createCustomMap();
- var reaction = helper.createReaction(map);
+ var reaction = helper.createReaction(map, true);
map.getModel().addReaction(reaction);
var oc = helper.createDbOverlay(map);
diff --git a/frontend-js/src/test/js/plugin/MinervaPluginProxy-test.js b/frontend-js/src/test/js/plugin/MinervaPluginProxy-test.js
index 6662e7e27ee77d6081b56c75cd8de19314e21665..dec73809dc8a0cb8b1c9ae354efd912c2eb6c5c2 100644
--- a/frontend-js/src/test/js/plugin/MinervaPluginProxy-test.js
+++ b/frontend-js/src/test/js/plugin/MinervaPluginProxy-test.js
@@ -151,8 +151,7 @@ describe('MinervaPluginProxy', function () {
});
});
it('no listeners', function () {
- var callbackOk = false;
- var map, options;
+ var map;
return ServerConnector.getProject().then(function (project) {
map = helper.createCustomMap(project);
helper.createSearchDbOverlay(map);