From 3b83183654d0acda898f023d3ebdfe9ac824519e Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Mon, 3 Oct 2022 13:47:04 +0200
Subject: [PATCH] changelog updated
---
CHANGELOG | 6 ++++++
CellDesigner-plugin/pom.xml | 8 ++++----
annotation/pom.xml | 10 +++++-----
commons/pom.xml | 2 +-
converter-CellDesigner/pom.xml | 6 +++---
converter-SBGNML/pom.xml | 10 +++++-----
converter-graphics/pom.xml | 6 +++---
converter-sbml/pom.xml | 12 ++++++------
converter/pom.xml | 4 ++--
frontend-js/pom.xml | 2 +-
model-command/pom.xml | 6 +++---
model/pom.xml | 4 ++--
pathvisio/pom.xml | 10 +++++-----
persist/pom.xml | 4 ++--
pom.xml | 2 +-
rest-api/pom.xml | 8 ++++----
service/pom.xml | 18 +++++++++---------
web/pom.xml | 8 ++++----
18 files changed, 66 insertions(+), 60 deletions(-)
diff --git a/CHANGELOG b/CHANGELOG
index 55b883b2b1..f845a277de 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -1,3 +1,9 @@
+minerva (16.2.9) stable; urgency=medium
+ * Bug fix: parsing GPML file with unknown ShapeType caused errors during
+ parsing (#1776)
+
+ -- Piotr Gawron <piotr.gawron@uni.lu> Mon, 03 Oct 2022 13:00:00 +0200
+
minerva (16.2.8) stable; urgency=medium
* Bug fix: missing content-type header in REST API documentation caused
issues with converter API (#1745, #1754, #1759, #1755)
diff --git a/CellDesigner-plugin/pom.xml b/CellDesigner-plugin/pom.xml
index 360c594e9d..aa15c1bc0f 100644
--- a/CellDesigner-plugin/pom.xml
+++ b/CellDesigner-plugin/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>CellDesigner-plugin</artifactId>
<!-- dependency from the MapViewer model -->
@@ -50,19 +50,19 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>commons</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
diff --git a/annotation/pom.xml b/annotation/pom.xml
index f1cb773ec7..85769a185f 100644
--- a/annotation/pom.xml
+++ b/annotation/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>annotation</artifactId>
<name>Annotation module</name>
@@ -18,7 +18,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- dependency from the MapViewer dao -->
@@ -26,7 +26,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>persist</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- dependency from the MapViewer cell designer parser (we need access
@@ -34,13 +34,13 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- Log4J2 -->
diff --git a/commons/pom.xml b/commons/pom.xml
index 7a85293061..4389ff934b 100644
--- a/commons/pom.xml
+++ b/commons/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>commons</artifactId>
<name>Mapviewer commons</name>
diff --git a/converter-CellDesigner/pom.xml b/converter-CellDesigner/pom.xml
index 43a21cc08e..0dc43c0f03 100644
--- a/converter-CellDesigner/pom.xml
+++ b/converter-CellDesigner/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>converter-CellDesigner</artifactId>
<name>CellDesigner converter</name>
@@ -17,13 +17,13 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- Log4J2 -->
diff --git a/converter-SBGNML/pom.xml b/converter-SBGNML/pom.xml
index 617f976b4b..f5879012f0 100644
--- a/converter-SBGNML/pom.xml
+++ b/converter-SBGNML/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>converter-SBGNML</artifactId>
@@ -20,26 +20,26 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>persist</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-graphics</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
diff --git a/converter-graphics/pom.xml b/converter-graphics/pom.xml
index 9632ee654c..a7407b2e51 100644
--- a/converter-graphics/pom.xml
+++ b/converter-graphics/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>converter-graphics</artifactId>
<name>MapViewer graphics converter</name>
@@ -18,13 +18,13 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model-command</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- Log4J2-->
diff --git a/converter-sbml/pom.xml b/converter-sbml/pom.xml
index 4cb70ee30c..e71bd7681b 100644
--- a/converter-sbml/pom.xml
+++ b/converter-sbml/pom.xml
@@ -7,7 +7,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>converter-sbml</artifactId>
<name>converter-sbml</name>
@@ -40,22 +40,22 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model-command</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- Log4J2 -->
@@ -154,7 +154,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-graphics</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
<scope>test</scope>
</dependency>
diff --git a/converter/pom.xml b/converter/pom.xml
index 18bfea5fb7..dc746dffdd 100644
--- a/converter/pom.xml
+++ b/converter/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>converter</artifactId>
@@ -15,7 +15,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>xerces</groupId>
diff --git a/frontend-js/pom.xml b/frontend-js/pom.xml
index 4e8e6fb2e3..1e341d56f4 100644
--- a/frontend-js/pom.xml
+++ b/frontend-js/pom.xml
@@ -7,7 +7,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>frontend-js</artifactId>
<name>frontend-js</name>
diff --git a/model-command/pom.xml b/model-command/pom.xml
index 7bed1d8b1b..95352116fe 100644
--- a/model-command/pom.xml
+++ b/model-command/pom.xml
@@ -3,7 +3,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>model-command</artifactId>
<name>Model commands</name>
@@ -16,7 +16,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
@@ -24,7 +24,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- Log4J2-->
diff --git a/model/pom.xml b/model/pom.xml
index 6020ebfe5d..a297015e32 100644
--- a/model/pom.xml
+++ b/model/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>model</artifactId>
<name>model MapViewer</name>
@@ -15,7 +15,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>commons</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- Java xml serialization -->
diff --git a/pathvisio/pom.xml b/pathvisio/pom.xml
index e7d7cc0a20..1c2edb1936 100644
--- a/pathvisio/pom.xml
+++ b/pathvisio/pom.xml
@@ -5,7 +5,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>pathvisio</artifactId>
<name>Pathvisio plugin</name>
@@ -77,26 +77,26 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-graphics</artifactId>
<scope>test</scope>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model-command</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- Log4J2 -->
diff --git a/persist/pom.xml b/persist/pom.xml
index 6b03e628f0..9c80eccff7 100644
--- a/persist/pom.xml
+++ b/persist/pom.xml
@@ -7,7 +7,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>persist</artifactId>
@@ -27,7 +27,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- apache ftp -->
diff --git a/pom.xml b/pom.xml
index 9b392470b2..12137adf81 100644
--- a/pom.xml
+++ b/pom.xml
@@ -6,7 +6,7 @@
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
<packaging>pom</packaging>
<name>parent MapViewer</name>
diff --git a/rest-api/pom.xml b/rest-api/pom.xml
index 32fea3b279..a37c9a36b7 100644
--- a/rest-api/pom.xml
+++ b/rest-api/pom.xml
@@ -7,7 +7,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>rest-api</artifactId>
<name>rest-api</name>
@@ -19,19 +19,19 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>service</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>pathvisio</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
diff --git a/service/pom.xml b/service/pom.xml
index 5460f5dd8b..4812d7eded 100644
--- a/service/pom.xml
+++ b/service/pom.xml
@@ -7,7 +7,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>service</artifactId>
@@ -20,7 +20,7 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- dependency from the MapViewer dao -->
@@ -28,47 +28,47 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>persist</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model-command</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>annotation</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- dependency from the MapViewer cell designer parser -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- dependency from the MapViewer SBGN-ML parser -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-SBGNML</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- dependency from the MapViewer graphics converter -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-graphics</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- dependency from the SBML parser -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-sbml</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<!-- Log4J2 -->
diff --git a/web/pom.xml b/web/pom.xml
index d792b8fb3a..e27cbc3630 100644
--- a/web/pom.xml
+++ b/web/pom.xml
@@ -7,7 +7,7 @@
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</parent>
<artifactId>web</artifactId>
<packaging>war</packaging>
@@ -33,19 +33,19 @@
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>service</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>rest-api</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>frontend-js</artifactId>
- <version>16.2.8</version>
+ <version>16.2.9</version>
</dependency>
<dependency>
--
GitLab