From 310d7d76f0a7abda16cc941e5180864d288ef156 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Tue, 19 Dec 2017 12:26:53 +0100
Subject: [PATCH] reversible reactions have arrows in two directions
---
.../lcsb/mapviewer/converter/model/sbml/SbmlParser.java | 6 ++++++
.../mapviewer/converter/model/sbml/SbmlReactionParser.java | 3 +++
2 files changed, 9 insertions(+)
diff --git a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlParser.java b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlParser.java
index 145584ec07..c139cb3546 100644
--- a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlParser.java
+++ b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlParser.java
@@ -191,6 +191,9 @@ public class SbmlParser implements IConverter {
line.addPoint(reactantStartPoint);
line.addPoint(center);
line.addPoint(center);
+ if (reaction.isReversible()) {
+ line.getBeginAtd().setArrowType(ArrowType.FULL);
+ }
reaction.getReactants().get(0).setLine(line);
} else {
for (Reactant reactant : reaction.getReactants()) {
@@ -198,6 +201,9 @@ public class SbmlParser implements IConverter {
line.addPoint(reactantMergePoint);
line.addPoint(reactantMergePoint);
line.addPoint(reactant.getElement().getCenter());
+ if (reaction.isReversible()) {
+ line.getBeginAtd().setArrowType(ArrowType.FULL);
+ }
reactant.setLine(line);
}
NodeOperator operator = new AndOperator();
diff --git a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlReactionParser.java b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlReactionParser.java
index 82937f209d..f96d4e2f7b 100644
--- a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlReactionParser.java
+++ b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlReactionParser.java
@@ -159,6 +159,9 @@ public class SbmlReactionParser {
if (minervaNode instanceof Reactant) {
line = line.reverse();
line.addPoint(line.getEndPoint());
+ if (reactionWithLayout.isReversible()) {
+ line.getBeginAtd().setArrowType(ArrowType.FULL);
+ }
}
if (minervaNode instanceof Product) {
line.addPoint(0, line.getBeginPoint());
--
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