Commit 27648099 authored by Piotr Gawron's avatar Piotr Gawron
Browse files

package name must be lowercase

parent bb5073e8
......@@ -127,7 +127,7 @@
STATIC_INIT, INSTANCE_INIT, METHOD_DEF, CTOR_DEF, VARIABLE_DEF"/>
<property name="allowNoEmptyLineBetweenFields" value="true"/>
</module>
<!-- <module name="SeparatorWrap">
<module name="SeparatorWrap">
<property name="id" value="SeparatorWrapDot"/>
<property name="tokens" value="DOT"/>
<property name="option" value="nl"/>
......@@ -157,7 +157,7 @@
<message key="name.invalidPattern"
value="Package name ''{0}'' must match pattern ''{1}''."/>
</module>
<module name="TypeName">
<!-- <module name="TypeName">
<property name="tokens" value="CLASS_DEF, INTERFACE_DEF, ENUM_DEF, ANNOTATION_DEF"/>
<message key="name.invalidPattern"
value="Type name ''{0}'' must match pattern ''{1}''."/>
......
......@@ -46,8 +46,8 @@ import lcsb.mapviewer.common.exception.InvalidArgumentException;
import lcsb.mapviewer.common.geometry.ColorParser;
import lcsb.mapviewer.converter.ConverterException;
import lcsb.mapviewer.converter.annotation.XmlAnnotationParser;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.SpeciesConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.reaction.ReactionConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.SpeciesConverter;
import lcsb.mapviewer.converter.graphics.bioentity.reaction.ReactionConverter;
import lcsb.mapviewer.converter.model.celldesigner.CommonXmlParser;
import lcsb.mapviewer.model.LogMarker;
import lcsb.mapviewer.model.ProjectLogEntryType;
......
......@@ -48,7 +48,7 @@ import lcsb.mapviewer.common.geometry.PointTransformation;
import lcsb.mapviewer.converter.InvalidInputDataExecption;
import lcsb.mapviewer.converter.ZIndexPopulator;
import lcsb.mapviewer.converter.annotation.XmlAnnotationParser;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.SpeciesConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.SpeciesConverter;
import lcsb.mapviewer.converter.model.celldesigner.annotation.RestAnnotationParser;
import lcsb.mapviewer.converter.model.celldesigner.geometry.CellDesignerAliasConverter;
import lcsb.mapviewer.converter.model.celldesigner.geometry.ReactionCellDesignerConverter;
......
......@@ -17,7 +17,7 @@ import lcsb.mapviewer.commands.ColorExtractor;
import lcsb.mapviewer.commands.SemanticZoomLevelMatcher;
import lcsb.mapviewer.common.MimeType;
import lcsb.mapviewer.common.Pair;
import lcsb.mapviewer.converter.graphics.bioEntity.BioEntityConverterImpl;
import lcsb.mapviewer.converter.graphics.bioentity.BioEntityConverterImpl;
import lcsb.mapviewer.converter.graphics.layer.LayerLineConverter;
import lcsb.mapviewer.converter.graphics.layer.LayerOvalConverter;
import lcsb.mapviewer.converter.graphics.layer.LayerRectConverter;
......
package lcsb.mapviewer.converter.graphics.bioEntity;
package lcsb.mapviewer.converter.graphics.bioentity;
import java.awt.Graphics2D;
import java.util.ArrayList;
......
package lcsb.mapviewer.converter.graphics.bioEntity;
package lcsb.mapviewer.converter.graphics.bioentity;
import java.awt.Graphics2D;
import java.util.List;
......@@ -11,29 +11,29 @@ import lcsb.mapviewer.common.exception.InvalidArgumentException;
import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.converter.graphics.ConverterParams;
import lcsb.mapviewer.converter.graphics.DrawingException;
import lcsb.mapviewer.converter.graphics.bioEntity.element.compartment.BottomSquareCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.compartment.LeftSquareCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.compartment.OvalCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.compartment.PathwayCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.compartment.RightSquareCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.compartment.SquareCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.compartment.TopSquareCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.AntisenseRnaConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.ComplexConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.ComplexSbgnConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.DegradedConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.DrugConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.GeneConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.IonConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.PhenotypeConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.ProteinConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.ProteinSbgnConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.RnaConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.SBGNNucleicAcidFeatureConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.SimpleMoleculeConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.SimpleMoleculeSbgnConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.element.species.UnknownConverter;
import lcsb.mapviewer.converter.graphics.bioEntity.reaction.ReactionConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.compartment.BottomSquareCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.compartment.LeftSquareCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.compartment.OvalCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.compartment.PathwayCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.compartment.RightSquareCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.compartment.SquareCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.compartment.TopSquareCompartmentConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.AntisenseRnaConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.ComplexConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.ComplexSbgnConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.DegradedConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.DrugConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.GeneConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.IonConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.PhenotypeConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.ProteinConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.ProteinSbgnConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.RnaConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.SBGNNucleicAcidFeatureConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.SimpleMoleculeConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.SimpleMoleculeSbgnConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.species.UnknownConverter;
import lcsb.mapviewer.converter.graphics.bioentity.reaction.ReactionConverter;
import lcsb.mapviewer.model.map.BioEntity;
import lcsb.mapviewer.model.map.compartment.BottomSquareCompartment;
import lcsb.mapviewer.model.map.compartment.LeftSquareCompartment;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element;
package lcsb.mapviewer.converter.graphics.bioentity.element;
import java.awt.Color;
import java.awt.Graphics2D;
......@@ -12,7 +12,7 @@ import javax.imageio.ImageIO;
import lcsb.mapviewer.commands.ColorExtractor;
import lcsb.mapviewer.converter.graphics.ConverterParams;
import lcsb.mapviewer.converter.graphics.DrawingException;
import lcsb.mapviewer.converter.graphics.bioEntity.BioEntityConverter;
import lcsb.mapviewer.converter.graphics.bioentity.BioEntityConverter;
import lcsb.mapviewer.model.map.layout.graphics.Glyph;
import lcsb.mapviewer.model.map.species.Element;
import lcsb.mapviewer.model.overlay.DataOverlayEntry;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element.compartment;
package lcsb.mapviewer.converter.graphics.bioentity.element.compartment;
import java.awt.Shape;
import java.awt.geom.Area;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element.compartment;
package lcsb.mapviewer.converter.graphics.bioentity.element.compartment;
import java.awt.Color;
import java.awt.Font;
......@@ -17,7 +17,7 @@ import lcsb.mapviewer.common.exception.NotImplementedException;
import lcsb.mapviewer.common.geometry.LineTransformation;
import lcsb.mapviewer.converter.graphics.ConverterParams;
import lcsb.mapviewer.converter.graphics.DrawingException;
import lcsb.mapviewer.converter.graphics.bioEntity.element.ElementConverter;
import lcsb.mapviewer.converter.graphics.bioentity.element.ElementConverter;
import lcsb.mapviewer.converter.graphics.geometry.FontFinder;
import lcsb.mapviewer.converter.graphics.geometry.RectangleTooSmallException;
import lcsb.mapviewer.converter.graphics.placefinder.PlaceFinder;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element.compartment;
package lcsb.mapviewer.converter.graphics.bioentity.element.compartment;
import java.awt.Shape;
import java.awt.geom.Area;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element.compartment;
package lcsb.mapviewer.converter.graphics.bioentity.element.compartment;
import java.awt.Shape;
import java.awt.geom.Ellipse2D;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element.compartment;
package lcsb.mapviewer.converter.graphics.bioentity.element.compartment;
import java.awt.Color;
import java.awt.Graphics2D;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element.compartment;
package lcsb.mapviewer.converter.graphics.bioentity.element.compartment;
import java.awt.Shape;
import java.awt.geom.Area;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element.compartment;
package lcsb.mapviewer.converter.graphics.bioentity.element.compartment;
import java.awt.Graphics2D;
import java.awt.Shape;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element.compartment;
package lcsb.mapviewer.converter.graphics.bioentity.element.compartment;
import java.awt.Graphics2D;
import java.awt.Shape;
......
......@@ -2,4 +2,4 @@
* Provides classes that draws different implemention of {@link Compartment} on
* the {@link Graphics2D}.
*/
package lcsb.mapviewer.converter.graphics.bioEntity.element.compartment;
package lcsb.mapviewer.converter.graphics.bioentity.element.compartment;
......@@ -2,4 +2,4 @@
* Provides classes that draws {@link lcsb.mapviewer.model.map.species.Element
* Elements} on the Graphics2D object.
*/
package lcsb.mapviewer.converter.graphics.bioEntity.element;
package lcsb.mapviewer.converter.graphics.bioentity.element;
package lcsb.mapviewer.converter.graphics.bioEntity.element.species;
package lcsb.mapviewer.converter.graphics.bioentity.element.species;
import java.awt.Color;
import java.awt.Graphics2D;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element.species;
package lcsb.mapviewer.converter.graphics.bioentity.element.species;
import java.awt.Color;
import java.awt.Font;
......
package lcsb.mapviewer.converter.graphics.bioEntity.element.species;
package lcsb.mapviewer.converter.graphics.bioentity.element.species;
import java.awt.Color;
import java.awt.Graphics2D;
......
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