From 24787e04d299a606b2c4c1aad119250a861c16b2 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Fri, 16 Nov 2018 18:19:29 +0100
Subject: [PATCH] compartment has hardcoded constant property (for sbml
validation)
---
.../model/sbml/compartment/SbmlCompartmentExporter.java | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/compartment/SbmlCompartmentExporter.java b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/compartment/SbmlCompartmentExporter.java
index a2c9440808..03eaf4aa30 100644
--- a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/compartment/SbmlCompartmentExporter.java
+++ b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/compartment/SbmlCompartmentExporter.java
@@ -24,10 +24,15 @@ public class SbmlCompartmentExporter extends SbmlElementExporter<Compartment, or
@Override
public org.sbml.jsbml.Compartment createSbmlElement(Compartment element) throws InconsistentModelException {
+ org.sbml.jsbml.Compartment result;
if (element == null || element.getElementId().equals("default")) {
- return getSbmlModel().createCompartment("default");
+ result = getSbmlModel().createCompartment("default");
+ } else {
+ result = getSbmlModel().createCompartment("comp_" + (getNextId()));
}
- return getSbmlModel().createCompartment("comp_" + (getNextId()));
+ //for now we don't have this information - needed for validation
+ result.setConstant(true);
+ return result;
}
@Override
--
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