Commit 223d7bc7 authored by Piotr Gawron's avatar Piotr Gawron
Browse files

TransparencyZoomLevelVisibility changed to SemanticZoomLevelTransparency

parent da0a20af
Pipeline #10027 failed with stage
in 9 minutes and 43 seconds
......@@ -46,6 +46,8 @@ minerva (12.3.0~alpha.0) unstable; urgency=low
* Small improvement: when adding new project columns "Root map", "Mapping
file" and "Map type" are merged (#700)
* Small improvement: allow admin to disable CORS check (#802)
* Small improvement: TransparencyZoomLevelVisibility parameter renamed to
SemanticZoomLevelTransparency (#801)
* Bug fix: progress bar of gene genome mapping upload is refreshing properly
(#728)
* Bug fix: when editing project Disease and Organism could not be removed
......
......@@ -128,7 +128,13 @@ public enum NoteField {
/**
* {@link Element#getSemanticZoomLevelVisibility()}.
*/
TRANSPARENCY_ZOOM_LEVEL_VISIBILITY("TransparencyZoomLevelVisibility", Element.class, null),
TRANSPARENCY_ZOOM_LEVEL_VISIBILITY("SemanticZoomLevelTransparency", Element.class, null),
/**
* {@link Element#getSemanticZoomLevelVisibility()}.
*/
@Deprecated
TRANSPARENCY_ZOOM_LEVEL_VISIBILITY_OLD("TransparencyZoomLevelVisibility", Element.class, null),
;
/**
......
......@@ -160,7 +160,7 @@ public class RestAnnotationParser {
return "";
}
} else if (value instanceof String) {
String string =(String) value;
String string = (String) value;
if (!(string.trim().isEmpty()) || forceFullInfo) {
return type.getCommonName() + ": " + XmlParser.escapeXml(string) + "\n";
} else {
......@@ -684,7 +684,14 @@ public class RestAnnotationParser {
String transparencyZoomLevelVisibility = getParamByPrefix(annotationString,
NoteField.TRANSPARENCY_ZOOM_LEVEL_VISIBILITY.getCommonName() + ":");
if (transparencyZoomLevelVisibility == null) {
return;
transparencyZoomLevelVisibility = getParamByPrefix(annotationString,
NoteField.TRANSPARENCY_ZOOM_LEVEL_VISIBILITY_OLD.getCommonName() + ":");
if (transparencyZoomLevelVisibility == null) {
return;
} else {
logger.warn("Deprecated parameter found: " + NoteField.TRANSPARENCY_ZOOM_LEVEL_VISIBILITY_OLD.getCommonName()
+ ". Use " + NoteField.TRANSPARENCY_ZOOM_LEVEL_VISIBILITY.getCommonName());
}
}
if (element.getTransparencyLevel() == null || element.getTransparencyLevel().isEmpty()) {
element.setTransparencyLevel(transparencyZoomLevelVisibility);
......
......@@ -107,6 +107,18 @@ public class CellDesignerXmlParserTest extends CellDesignerTestFunctions {
}
}
@Test
public void testParseTransparencyDeprecated() throws Exception {
try {
CellDesignerXmlParser parser = new CellDesignerXmlParser();
Model model = parser.createModel(new ConverterParams().filename("testFiles/model_with_transparency_old.xml"));
assertFalse(model.getCompartments().get(0).getTransparencyLevel().isEmpty());
} catch (Exception e) {
e.printStackTrace();
throw e;
}
}
@Test
public void testParseVcard() throws Exception {
try {
......
......@@ -164,7 +164,7 @@
<head>
<title/>
</head>
<body>TransparencyZoomLevelVisibility:0
<body>SemanticZoomLevelTransparency:0
</body>
</html>
</notes>
......@@ -180,7 +180,7 @@
<head>
<title/>
</head>
<body>TransparencyZoomLevelVisibility:1
<body>SemanticZoomLevelTransparency:1
</body>
</html>
</notes>
......@@ -196,7 +196,7 @@
<head>
<title/>
</head>
<body>TransparencyZoomLevelVisibility:2
<body>SemanticZoomLevelTransparency:2
</body>
</html>
</notes>
......@@ -212,7 +212,7 @@
<head>
<title/>
</head>
<body>TransparencyZoomLevelVisibility:3
<body>SemanticZoomLevelTransparency:3
</body>
</html>
</notes>
......
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