From 1a11a841ce7bcb5952b27da8ce495b7831cd70ac Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Wed, 7 Feb 2018 13:36:17 +0100
Subject: [PATCH] new constructors added (with reaction id arg)
---
.../model/map/reaction/Reaction.java | 4 +
.../map/reaction/type/TransportReaction.java | 88 ++++++++++---------
2 files changed, 51 insertions(+), 41 deletions(-)
diff --git a/model/src/main/java/lcsb/mapviewer/model/map/reaction/Reaction.java b/model/src/main/java/lcsb/mapviewer/model/map/reaction/Reaction.java
index 567e40b0cf..36c3ad235c 100644
--- a/model/src/main/java/lcsb/mapviewer/model/map/reaction/Reaction.java
+++ b/model/src/main/java/lcsb/mapviewer/model/map/reaction/Reaction.java
@@ -261,6 +261,10 @@ public class Reaction implements BioEntity {
}
+ public Reaction(String reactionId) {
+ setIdReaction(reactionId);
+ }
+
/**
* Adds node to the reaction.
*
diff --git a/model/src/main/java/lcsb/mapviewer/model/map/reaction/type/TransportReaction.java b/model/src/main/java/lcsb/mapviewer/model/map/reaction/type/TransportReaction.java
index b55aaa188a..4d107c09f9 100644
--- a/model/src/main/java/lcsb/mapviewer/model/map/reaction/type/TransportReaction.java
+++ b/model/src/main/java/lcsb/mapviewer/model/map/reaction/type/TransportReaction.java
@@ -18,51 +18,57 @@ import lcsb.mapviewer.model.map.reaction.Reaction;
@DiscriminatorValue("TRANSPORT_REACTION")
public class TransportReaction extends Reaction implements SimpleReactionInterface {
- /**
- *
- */
- private static final long serialVersionUID = 1L;
+ /**
+ *
+ */
+ private static final long serialVersionUID = 1L;
- /**
- * Default constructor.
- */
- public TransportReaction() {
- super();
- }
+ /**
+ * Default constructor.
+ */
+ public TransportReaction() {
+ super();
+ }
- /**
- * Constructor that copies data from the parameter given in the argument.
- *
- * @param result
- * parent reaction from which we copy data
- */
- public TransportReaction(Reaction result) {
- super(result);
- if (result.getProducts().size() < 1) {
- throw new InvalidArgumentException("Reaction cannot be transformed to " + getStringType() + ": number of products must be greater than 0");
- }
- if (result.getReactants().size() < 1) {
- throw new InvalidArgumentException("Reaction cannot be transformed to " + getStringType() + ": number of reactants must be greater than 0");
- }
- }
+ /**
+ * Constructor that copies data from the parameter given in the argument.
+ *
+ * @param result
+ * parent reaction from which we copy data
+ */
+ public TransportReaction(Reaction result) {
+ super(result);
+ if (result.getProducts().size() < 1) {
+ throw new InvalidArgumentException(
+ "Reaction cannot be transformed to " + getStringType() + ": number of products must be greater than 0");
+ }
+ if (result.getReactants().size() < 1) {
+ throw new InvalidArgumentException(
+ "Reaction cannot be transformed to " + getStringType() + ": number of reactants must be greater than 0");
+ }
+ }
- @Override
- public String getStringType() {
- return "Transport";
- }
+ public TransportReaction(String reactionId) {
+ super(reactionId);
+ }
- @Override
- public ReactionRect getReactionRect() {
- return ReactionRect.RECT_EMPTY;
- }
+ @Override
+ public String getStringType() {
+ return "Transport";
+ }
- @Override
- public TransportReaction copy() {
- if (this.getClass() == TransportReaction.class) {
- return new TransportReaction(this);
- } else {
- throw new NotImplementedException("Method copy() should be overriden in class " + this.getClass());
- }
- }
+ @Override
+ public ReactionRect getReactionRect() {
+ return ReactionRect.RECT_EMPTY;
+ }
+
+ @Override
+ public TransportReaction copy() {
+ if (this.getClass() == TransportReaction.class) {
+ return new TransportReaction(this);
+ } else {
+ throw new NotImplementedException("Method copy() should be overriden in class " + this.getClass());
+ }
+ }
}
--
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