diff --git a/.classpath b/.classpath
deleted file mode 100644
index 865cf84c0d961ebbf16763d78f6944b579941a4c..0000000000000000000000000000000000000000
--- a/.classpath
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/.gitignore b/.gitignore
index de65c7e6d17888ada8a2dcd5c39a823eaf44f7b6..4ac865def948f5fd76ca1f432bc7b72a57da7497 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,17 +1,24 @@
 annotation/minerva-big/
 builds/
-debian/src/
-debian/minerva*
-debian/src/*.sql
 map_images/
 minerva-big/
-*/target/
 web/src/main/webapp/svnversion.txt
 *.war
-/target/
 service/minerva-big/
 npm-debug.log
 converter-sbml/jsbml.log
 
+#IntelliJ files
 .idea/
 *.iml
+
+#eclipse files
+*/target/
+/target/
+.classpath
+.settings
+
+#debian build files
+debian/src/
+debian/minerva*
+debian/src/*.sql
diff --git a/.settings/org.eclipse.core.resources.prefs b/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 4824b8026319a8fb303971008a7d59a816d58bd6..0000000000000000000000000000000000000000
--- a/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-eclipse.preferences.version=1
-encoding/<project>=UTF-8
diff --git a/.settings/org.eclipse.jdt.core.prefs b/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index fd9afef6e9e63ef48fbfbbd030f6b55637b5ecff..0000000000000000000000000000000000000000
--- a/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
diff --git a/.settings/org.eclipse.m2e.core.prefs b/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/.settings/org.eclipse.wst.validation.prefs b/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index f152643ccfb0291f2fc8292455e27870c4573909..0000000000000000000000000000000000000000
--- a/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,18 +0,0 @@
-DELEGATES_PREFERENCE=delegateValidatorList
-USER_BUILD_PREFERENCE=enabledBuildValidatorListorg.eclipse.wst.wsi.ui.internal.WSIMessageValidator;
-USER_MANUAL_PREFERENCE=enabledManualValidatorListorg.eclipse.wst.wsi.ui.internal.WSIMessageValidator;
-USER_PREFERENCE=overrideGlobalPreferencesfalse
-eclipse.preferences.version=1
-override=false
-suspend=false
-vals/org.eclipse.jst.jsf.facelet.ui.FaceletHTMLValidator/global=FF01
-vals/org.eclipse.jst.jsp.core.JSPBatchValidator/global=FF01
-vals/org.eclipse.jst.jsp.core.JSPContentValidator/global=FF01
-vals/org.eclipse.jst.jsp.core.TLDValidator/global=FF01
-vals/org.eclipse.wst.dtd.core.dtdDTDValidator/global=FF01
-vals/org.eclipse.wst.html.core.HTMLValidator/global=FF01
-vals/org.eclipse.wst.wsdl.validation.wsdl/global=FF02158org.eclipse.wst.wsdl.validation.internal.eclipse.Validator
-vals/org.eclipse.wst.xml.core.xml/global=FF03
-vals/org.eclipse.wst.xsd.core.xsd/global=FF02162org.eclipse.wst.xsd.core.internal.validation.eclipse.Validator
-vals/org.eclipse.wst.xsl.core.xsl/global=FF02
-vf.version=3
diff --git a/CellDesigner-plugin/.classpath b/CellDesigner-plugin/.classpath
deleted file mode 100644
index 2787dc1507e6c4c6253629c420e8e1bd9bf889e9..0000000000000000000000000000000000000000
--- a/CellDesigner-plugin/.classpath
+++ /dev/null
@@ -1,38 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/CellDesigner-plugin/.gitignore b/CellDesigner-plugin/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/CellDesigner-plugin/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/CellDesigner-plugin/.settings/org.eclipse.core.resources.prefs b/CellDesigner-plugin/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/CellDesigner-plugin/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/CellDesigner-plugin/.settings/org.eclipse.jdt.core.prefs b/CellDesigner-plugin/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index f494d1de02b8cd4cf5ece5741b567665e239eeb6..0000000000000000000000000000000000000000
--- a/CellDesigner-plugin/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/CellDesigner-plugin/.settings/org.eclipse.m2e.core.prefs b/CellDesigner-plugin/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/CellDesigner-plugin/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/annotation/.classpath b/annotation/.classpath
deleted file mode 100644
index 5b0cf1c117283eea78fa7817953c7f20b4953ff6..0000000000000000000000000000000000000000
--- a/annotation/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/annotation/.gitignore b/annotation/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/annotation/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/annotation/.settings/org.eclipse.core.resources.prefs b/annotation/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/annotation/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/annotation/.settings/org.eclipse.jdt.core.prefs b/annotation/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index e24b722f83ced28c94e330a76fb64c16a6973c0c..0000000000000000000000000000000000000000
--- a/annotation/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,13 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.debug.lineNumber=generate
-org.eclipse.jdt.core.compiler.debug.localVariable=generate
-org.eclipse.jdt.core.compiler.debug.sourceFile=generate
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/annotation/.settings/org.eclipse.m2e.core.prefs b/annotation/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/annotation/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/annotation/.settings/org.eclipse.wst.common.component b/annotation/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index 119cf0baec465a81658369516d43dc4fa6a14ab6..0000000000000000000000000000000000000000
--- a/annotation/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-annotation">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/annotation/.settings/org.eclipse.wst.common.project.facet.core.xml b/annotation/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/annotation/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/annotation/.settings/org.eclipse.wst.validation.prefs b/annotation/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/annotation/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/commons/.classpath b/commons/.classpath
deleted file mode 100644
index 2d7c6a5d6de3d9e624da5555fd9d296e3a3f88ee..0000000000000000000000000000000000000000
--- a/commons/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/commons/.gitignore b/commons/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/commons/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/commons/.settings/org.eclipse.core.resources.prefs b/commons/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/commons/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/commons/.settings/org.eclipse.jdt.core.prefs b/commons/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 991da2c903069420da07737ead576aefa16181fe..0000000000000000000000000000000000000000
--- a/commons/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/commons/.settings/org.eclipse.m2e.core.prefs b/commons/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/commons/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/commons/.settings/org.eclipse.wst.common.component b/commons/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index d862455d3c3315c2677fa6fad79ed959f8e97b54..0000000000000000000000000000000000000000
--- a/commons/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-commons">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/commons/.settings/org.eclipse.wst.common.project.facet.core.xml b/commons/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/commons/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/commons/.settings/org.eclipse.wst.validation.prefs b/commons/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/commons/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/comparison/.classpath b/comparison/.classpath
deleted file mode 100644
index 5919bb8b867f5e8c70f91ca9b23dd4199bfa1d96..0000000000000000000000000000000000000000
--- a/comparison/.classpath
+++ /dev/null
@@ -1,32 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/comparison/.gitignore b/comparison/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/comparison/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/comparison/.settings/org.eclipse.core.resources.prefs b/comparison/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 365bbd6097a6b1bb6e06963e12b1bea10c30d0f4..0000000000000000000000000000000000000000
--- a/comparison/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,5 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding/<project>=UTF-8
diff --git a/comparison/.settings/org.eclipse.jdt.core.prefs b/comparison/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index f494d1de02b8cd4cf5ece5741b567665e239eeb6..0000000000000000000000000000000000000000
--- a/comparison/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/comparison/.settings/org.eclipse.m2e.core.prefs b/comparison/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/comparison/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/console/.classpath b/console/.classpath
deleted file mode 100644
index 8ffcdca27339ac3d3b468b032c359be4d9686fc3..0000000000000000000000000000000000000000
--- a/console/.classpath
+++ /dev/null
@@ -1,38 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/console/.gitignore b/console/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/console/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/console/.settings/org.eclipse.core.resources.prefs b/console/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/console/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/console/.settings/org.eclipse.jdt.core.prefs b/console/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index f494d1de02b8cd4cf5ece5741b567665e239eeb6..0000000000000000000000000000000000000000
--- a/console/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/console/.settings/org.eclipse.m2e.core.prefs b/console/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/console/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/converter-CellDesigner/.classpath b/converter-CellDesigner/.classpath
deleted file mode 100644
index 10bcdfc9012338d66b0fa52fc7c8598db071ac3c..0000000000000000000000000000000000000000
--- a/converter-CellDesigner/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/converter-CellDesigner/.gitignore b/converter-CellDesigner/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/converter-CellDesigner/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/converter-CellDesigner/.settings/org.eclipse.core.resources.prefs b/converter-CellDesigner/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/converter-CellDesigner/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/converter-CellDesigner/.settings/org.eclipse.jdt.core.prefs b/converter-CellDesigner/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 991da2c903069420da07737ead576aefa16181fe..0000000000000000000000000000000000000000
--- a/converter-CellDesigner/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/converter-CellDesigner/.settings/org.eclipse.m2e.core.prefs b/converter-CellDesigner/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/converter-CellDesigner/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/converter-CellDesigner/.settings/org.eclipse.wst.common.component b/converter-CellDesigner/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index a38de8eadd1789aa27804b0c552b62d553399fe4..0000000000000000000000000000000000000000
--- a/converter-CellDesigner/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-converter-CellDesigner">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/converter-CellDesigner/.settings/org.eclipse.wst.common.project.facet.core.xml b/converter-CellDesigner/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/converter-CellDesigner/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/converter-CellDesigner/.settings/org.eclipse.wst.validation.prefs b/converter-CellDesigner/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/converter-CellDesigner/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/converter-SBGNML/.classpath b/converter-SBGNML/.classpath
deleted file mode 100644
index 214629b39b3c29dc5bf6fa46ad718acff9314544..0000000000000000000000000000000000000000
--- a/converter-SBGNML/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/converter-SBGNML/.gitignore b/converter-SBGNML/.gitignore
index ae3c1726048cd06b9a143e0376ed46dd9b9a8d53..ed1614da3bfd10591941ecb33c06ff989844a9ca 100644
--- a/converter-SBGNML/.gitignore
+++ b/converter-SBGNML/.gitignore
@@ -1 +1,5 @@
-/bin/
+#eclipse files
+bin
+target
+.classpath
+.settings
diff --git a/converter-SBGNML/.settings/org.eclipse.core.resources.prefs b/converter-SBGNML/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/converter-SBGNML/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/converter-SBGNML/.settings/org.eclipse.jdt.core.prefs b/converter-SBGNML/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 991da2c903069420da07737ead576aefa16181fe..0000000000000000000000000000000000000000
--- a/converter-SBGNML/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/converter-SBGNML/.settings/org.eclipse.m2e.core.prefs b/converter-SBGNML/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/converter-SBGNML/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/converter-SBGNML/.settings/org.eclipse.wst.common.component b/converter-SBGNML/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index d4f8233791011c4a5d6b3b1fa5c37c61253d1c17..0000000000000000000000000000000000000000
--- a/converter-SBGNML/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-converter-SBGNML">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/converter-SBGNML/.settings/org.eclipse.wst.common.project.facet.core.xml b/converter-SBGNML/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/converter-SBGNML/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/converter-SBGNML/.settings/org.eclipse.wst.validation.prefs b/converter-SBGNML/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/converter-SBGNML/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/converter-graphics/.classpath b/converter-graphics/.classpath
deleted file mode 100644
index e90097a5e738d4c265768bf03891c77d4281f2c8..0000000000000000000000000000000000000000
--- a/converter-graphics/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/converter-graphics/.gitignore b/converter-graphics/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/converter-graphics/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/converter-graphics/.settings/org.eclipse.core.resources.prefs b/converter-graphics/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/converter-graphics/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/converter-graphics/.settings/org.eclipse.jdt.core.prefs b/converter-graphics/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 991da2c903069420da07737ead576aefa16181fe..0000000000000000000000000000000000000000
--- a/converter-graphics/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/converter-graphics/.settings/org.eclipse.m2e.core.prefs b/converter-graphics/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/converter-graphics/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/converter-graphics/.settings/org.eclipse.wst.common.component b/converter-graphics/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index b5db52c6c5ae59fc63dfb5087a95c2386b0512dc..0000000000000000000000000000000000000000
--- a/converter-graphics/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-converter-graphics">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/converter-graphics/.settings/org.eclipse.wst.common.project.facet.core.xml b/converter-graphics/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/converter-graphics/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/converter-graphics/.settings/org.eclipse.wst.validation.prefs b/converter-graphics/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/converter-graphics/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/converter-sbml/.classpath b/converter-sbml/.classpath
deleted file mode 100644
index 02b328e20b63be7b68fe59db50ffc50bfb63d11b..0000000000000000000000000000000000000000
--- a/converter-sbml/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/converter-sbml/.gitignore b/converter-sbml/.gitignore
index b63db0be70551e9eba1324140647e7df021613bc..4cc6dcf966e2641291794e2ca5831abdda8f4ab4 100644
--- a/converter-sbml/.gitignore
+++ b/converter-sbml/.gitignore
@@ -1,5 +1,4 @@
-.settings/org.eclipse.wst.validation.prefs
-
-/bin/
-tmp.png
-tmp.xml
+#eclipse files
+target
+.classpath
+.settings
diff --git a/converter-sbml/.settings/org.eclipse.core.resources.prefs b/converter-sbml/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 29abf999564110a0d6aca109f55f439c72b7031c..0000000000000000000000000000000000000000
--- a/converter-sbml/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/converter-sbml/.settings/org.eclipse.jdt.core.prefs b/converter-sbml/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 4e4a3ada9aeac01e3bdc83230c968feb2575c8fd..0000000000000000000000000000000000000000
--- a/converter-sbml/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/converter-sbml/.settings/org.eclipse.m2e.core.prefs b/converter-sbml/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index f897a7f1cb2389f85fe6381425d29f0a9866fb65..0000000000000000000000000000000000000000
--- a/converter-sbml/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/converter-sbml/.settings/org.eclipse.wst.common.component b/converter-sbml/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index 39eb1603ac287274b92ca67fb3c3a67be0f289b5..0000000000000000000000000000000000000000
--- a/converter-sbml/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="converter-sbml">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/converter-sbml/.settings/org.eclipse.wst.common.project.facet.core.xml b/converter-sbml/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index fb95c4573c3b3c9ab0a26ac666d38876ea86083f..0000000000000000000000000000000000000000
--- a/converter-sbml/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/converter/.classpath b/converter/.classpath
deleted file mode 100644
index d31a016bf3cf67396dfc9b82a804aabe1bb7854d..0000000000000000000000000000000000000000
--- a/converter/.classpath
+++ /dev/null
@@ -1,34 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/converter/.gitignore b/converter/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/converter/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/converter/.settings/org.eclipse.core.resources.prefs b/converter/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 8bc0e1c8b512d001245af215a67b67bc6d5b94ba..0000000000000000000000000000000000000000
--- a/converter/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,5 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/converter/.settings/org.eclipse.jdt.core.prefs b/converter/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index e24b722f83ced28c94e330a76fb64c16a6973c0c..0000000000000000000000000000000000000000
--- a/converter/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,13 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.debug.lineNumber=generate
-org.eclipse.jdt.core.compiler.debug.localVariable=generate
-org.eclipse.jdt.core.compiler.debug.sourceFile=generate
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/converter/.settings/org.eclipse.m2e.core.prefs b/converter/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/converter/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/converter/.settings/org.eclipse.wst.common.component b/converter/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index 5e25deae9c6068d77ec0ce0574c7c5a269384c9f..0000000000000000000000000000000000000000
--- a/converter/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-converter">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-    </wb-module>
-</project-modules>
diff --git a/converter/.settings/org.eclipse.wst.common.project.facet.core.xml b/converter/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/converter/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/converter/.settings/org.eclipse.wst.validation.prefs b/converter/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/converter/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/editor/.classpath b/editor/.classpath
deleted file mode 100644
index d2bc4e02a317797b4a7686bbbeb522b91be9e228..0000000000000000000000000000000000000000
--- a/editor/.classpath
+++ /dev/null
@@ -1,38 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/editor/.gitignore b/editor/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/editor/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/editor/.settings/org.eclipse.core.resources.prefs b/editor/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/editor/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/editor/.settings/org.eclipse.jdt.core.prefs b/editor/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index f494d1de02b8cd4cf5ece5741b567665e239eeb6..0000000000000000000000000000000000000000
--- a/editor/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/editor/.settings/org.eclipse.m2e.core.prefs b/editor/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/editor/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/frontend-js/.classpath b/frontend-js/.classpath
deleted file mode 100644
index 1d05ba33dae2b473b1a117b335d6d204fef796f2..0000000000000000000000000000000000000000
--- a/frontend-js/.classpath
+++ /dev/null
@@ -1,28 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/frontend-js/.gitignore b/frontend-js/.gitignore
index 85bf40db478d89c911f8510b7155e5ab80276110..7dfdff84f49579b73867d5ed4d96a306a6e10798 100644
--- a/frontend-js/.gitignore
+++ b/frontend-js/.gitignore
@@ -1,11 +1,14 @@
-.idea/workspace.xml
-.idea/jsLibraryMappings.xml
-.idea/dictionaries/
-.idea/dbnavigator.xml
-.idea/inspectionProfiles/
-.idea/codeStyles/
+#InteliJ files
+.idea
 
+#node files
 /dist/
 /coverage/
 /node_modules/
 
+#eclipse files
+target
+.classpath
+.settings
+
+/bin/
diff --git a/frontend-js/.settings/org.eclipse.core.resources.prefs b/frontend-js/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 4824b8026319a8fb303971008a7d59a816d58bd6..0000000000000000000000000000000000000000
--- a/frontend-js/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-eclipse.preferences.version=1
-encoding/<project>=UTF-8
diff --git a/frontend-js/.settings/org.eclipse.jdt.core.prefs b/frontend-js/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 991da2c903069420da07737ead576aefa16181fe..0000000000000000000000000000000000000000
--- a/frontend-js/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/frontend-js/.settings/org.eclipse.m2e.core.prefs b/frontend-js/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/frontend-js/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/frontend-js/.settings/org.eclipse.wst.common.component b/frontend-js/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index 9b323a9512ec07dcde694c22059a99542a396785..0000000000000000000000000000000000000000
--- a/frontend-js/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="frontend-js">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-    </wb-module>
-</project-modules>
diff --git a/frontend-js/.settings/org.eclipse.wst.common.project.facet.core.xml b/frontend-js/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/frontend-js/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/frontend-js/.settings/org.eclipse.wst.validation.prefs b/frontend-js/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 04cad8cb752a9761c4e5167d0301d3a27674430f..0000000000000000000000000000000000000000
--- a/frontend-js/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/model-command/.classpath b/model-command/.classpath
deleted file mode 100644
index 2d7c6a5d6de3d9e624da5555fd9d296e3a3f88ee..0000000000000000000000000000000000000000
--- a/model-command/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/model-command/.gitignore b/model-command/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/model-command/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/model-command/.settings/org.eclipse.core.resources.prefs b/model-command/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/model-command/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/model-command/.settings/org.eclipse.jdt.core.prefs b/model-command/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 991da2c903069420da07737ead576aefa16181fe..0000000000000000000000000000000000000000
--- a/model-command/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/model-command/.settings/org.eclipse.m2e.core.prefs b/model-command/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/model-command/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/model-command/.settings/org.eclipse.wst.common.component b/model-command/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index a0aa7bd1f8a915d9a9c0016971d2de3915543517..0000000000000000000000000000000000000000
--- a/model-command/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-model-command">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/model-command/.settings/org.eclipse.wst.common.project.facet.core.xml b/model-command/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/model-command/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/model-command/.settings/org.eclipse.wst.validation.prefs b/model-command/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/model-command/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/model/.classpath b/model/.classpath
deleted file mode 100644
index 2d7c6a5d6de3d9e624da5555fd9d296e3a3f88ee..0000000000000000000000000000000000000000
--- a/model/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/model/.gitignore b/model/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/model/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/model/.settings/org.eclipse.core.resources.prefs b/model/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/model/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/model/.settings/org.eclipse.jdt.core.prefs b/model/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index e24b722f83ced28c94e330a76fb64c16a6973c0c..0000000000000000000000000000000000000000
--- a/model/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,13 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.debug.lineNumber=generate
-org.eclipse.jdt.core.compiler.debug.localVariable=generate
-org.eclipse.jdt.core.compiler.debug.sourceFile=generate
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/model/.settings/org.eclipse.m2e.core.prefs b/model/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/model/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/model/.settings/org.eclipse.wst.common.component b/model/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index f4e790a455f51cd10521ecaff79c81c861086f04..0000000000000000000000000000000000000000
--- a/model/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-model">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/model/.settings/org.eclipse.wst.common.project.facet.core.xml b/model/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/model/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/model/.settings/org.eclipse.wst.validation.prefs b/model/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/model/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/pathvisio/.classpath b/pathvisio/.classpath
deleted file mode 100644
index 36e8b1c83a8f4159477e1075b61a1f9a2df19709..0000000000000000000000000000000000000000
--- a/pathvisio/.classpath
+++ /dev/null
@@ -1,38 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/pathvisio/.gitignore b/pathvisio/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/pathvisio/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/pathvisio/.settings/org.eclipse.core.resources.prefs b/pathvisio/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/pathvisio/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/pathvisio/.settings/org.eclipse.jdt.core.prefs b/pathvisio/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index f494d1de02b8cd4cf5ece5741b567665e239eeb6..0000000000000000000000000000000000000000
--- a/pathvisio/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/pathvisio/.settings/org.eclipse.m2e.core.prefs b/pathvisio/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/pathvisio/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/persist/.classpath b/persist/.classpath
deleted file mode 100644
index 2d7c6a5d6de3d9e624da5555fd9d296e3a3f88ee..0000000000000000000000000000000000000000
--- a/persist/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/persist/.gitignore b/persist/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/persist/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/persist/.settings/org.eclipse.core.resources.prefs b/persist/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/persist/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/persist/.settings/org.eclipse.jdt.core.prefs b/persist/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 991da2c903069420da07737ead576aefa16181fe..0000000000000000000000000000000000000000
--- a/persist/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/persist/.settings/org.eclipse.m2e.core.prefs b/persist/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/persist/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/persist/.settings/org.eclipse.wst.common.component b/persist/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index 5a621bd5ae91cbb0853a052e8cdf0f3a885a0580..0000000000000000000000000000000000000000
--- a/persist/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-persist">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/persist/.settings/org.eclipse.wst.common.project.facet.core.xml b/persist/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/persist/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/persist/.settings/org.eclipse.wst.validation.prefs b/persist/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/persist/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/quadTrees/.classpath b/quadTrees/.classpath
deleted file mode 100644
index 2787dc1507e6c4c6253629c420e8e1bd9bf889e9..0000000000000000000000000000000000000000
--- a/quadTrees/.classpath
+++ /dev/null
@@ -1,38 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/quadTrees/.gitignore b/quadTrees/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/quadTrees/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/quadTrees/.settings/org.eclipse.core.resources.prefs b/quadTrees/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/quadTrees/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/quadTrees/.settings/org.eclipse.jdt.core.prefs b/quadTrees/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index f494d1de02b8cd4cf5ece5741b567665e239eeb6..0000000000000000000000000000000000000000
--- a/quadTrees/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/quadTrees/.settings/org.eclipse.m2e.core.prefs b/quadTrees/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/quadTrees/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/reactome/.classpath b/reactome/.classpath
deleted file mode 100644
index d2bc4e02a317797b4a7686bbbeb522b91be9e228..0000000000000000000000000000000000000000
--- a/reactome/.classpath
+++ /dev/null
@@ -1,38 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/reactome/.gitignore b/reactome/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/reactome/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/reactome/.settings/org.eclipse.core.resources.prefs b/reactome/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/reactome/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/reactome/.settings/org.eclipse.jdt.core.prefs b/reactome/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index f494d1de02b8cd4cf5ece5741b567665e239eeb6..0000000000000000000000000000000000000000
--- a/reactome/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/reactome/.settings/org.eclipse.m2e.core.prefs b/reactome/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/reactome/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/rest-api/.classpath b/rest-api/.classpath
deleted file mode 100644
index 7f345a678f3c4e16dfc187912925da0d4a1e1b34..0000000000000000000000000000000000000000
--- a/rest-api/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/rest-api/.gitignore b/rest-api/.gitignore
index ae3c1726048cd06b9a143e0376ed46dd9b9a8d53..4cc6dcf966e2641291794e2ca5831abdda8f4ab4 100644
--- a/rest-api/.gitignore
+++ b/rest-api/.gitignore
@@ -1 +1,4 @@
-/bin/
+#eclipse files
+target
+.classpath
+.settings
diff --git a/rest-api/.settings/org.eclipse.core.resources.prefs b/rest-api/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/rest-api/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/rest-api/.settings/org.eclipse.jdt.core.prefs b/rest-api/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 991da2c903069420da07737ead576aefa16181fe..0000000000000000000000000000000000000000
--- a/rest-api/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/rest-api/.settings/org.eclipse.m2e.core.prefs b/rest-api/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/rest-api/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/rest-api/.settings/org.eclipse.wst.common.component b/rest-api/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index 30ef6cd5dce6f3702fd44830b0742242ea9901f3..0000000000000000000000000000000000000000
--- a/rest-api/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-rest-api">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/rest-api/.settings/org.eclipse.wst.common.project.facet.core.xml b/rest-api/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/rest-api/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/rest-api/.settings/org.eclipse.wst.validation.prefs b/rest-api/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/rest-api/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/service/.classpath b/service/.classpath
deleted file mode 100644
index 2d7c6a5d6de3d9e624da5555fd9d296e3a3f88ee..0000000000000000000000000000000000000000
--- a/service/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/service/.gitignore b/service/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..4cc6dcf966e2641291794e2ca5831abdda8f4ab4
--- /dev/null
+++ b/service/.gitignore
@@ -0,0 +1,4 @@
+#eclipse files
+target
+.classpath
+.settings
diff --git a/service/.settings/org.eclipse.core.resources.prefs b/service/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/service/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/service/.settings/org.eclipse.jdt.core.prefs b/service/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 991da2c903069420da07737ead576aefa16181fe..0000000000000000000000000000000000000000
--- a/service/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/service/.settings/org.eclipse.m2e.core.prefs b/service/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/service/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/service/.settings/org.eclipse.wst.common.component b/service/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index 9d80116f9bd6db22d901d56f00c37246f09a0f36..0000000000000000000000000000000000000000
--- a/service/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-service">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>
diff --git a/service/.settings/org.eclipse.wst.common.project.facet.core.xml b/service/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index 6302d3e31361fb331cf7aaad184707ea3059ff5f..0000000000000000000000000000000000000000
--- a/service/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>
diff --git a/service/.settings/org.eclipse.wst.validation.prefs b/service/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/service/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1
diff --git a/web/.classpath b/web/.classpath
deleted file mode 100644
index 11def0e9b1b19511a0654bb38fdd41701b0e0018..0000000000000000000000000000000000000000
--- a/web/.classpath
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.dependency" value="/WEB-INF/lib"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
diff --git a/web/.gitignore b/web/.gitignore
index b334afad6491840a0b5c204e1ea0b214baac12db..2077efbfc6bccd905bc07f229c53efffe61c3639 100644
--- a/web/.gitignore
+++ b/web/.gitignore
@@ -1,5 +1,10 @@
-/node_modules/
-/coverage/
+#eclipse files
+target
+.classpath
+.settings
+
+#build files
 /src/main/webapp/resources/css/minerva.css
 /src/main/webapp/resources/js/minerva.js
 /src/main/webapp/resources/js/minerva.js.map
+
diff --git a/web/.settings/.jsdtscope b/web/.settings/.jsdtscope
deleted file mode 100644
index fac399cb99db5a467f9116225c0dd7a8a260af5f..0000000000000000000000000000000000000000
--- a/web/.settings/.jsdtscope
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" path="src/main/webapp"/>
-	<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.JRE_CONTAINER"/>
-	<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.WebProject">
-		<attributes>
-			<attribute name="hide" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.baseBrowserLibrary"/>
-	<classpathentry kind="output" path=""/>
-</classpath>
diff --git a/web/.settings/org.eclipse.core.resources.prefs b/web/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 04cfa2c1a8566d64dd12fcf7a8e895fe02e1856f..0000000000000000000000000000000000000000
--- a/web/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,6 +0,0 @@
-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8
diff --git a/web/.settings/org.eclipse.jdt.core.prefs b/web/.settings/org.eclipse.jdt.core.prefs
deleted file mode 100644
index 991da2c903069420da07737ead576aefa16181fe..0000000000000000000000000000000000000000
--- a/web/.settings/org.eclipse.jdt.core.prefs
+++ /dev/null
@@ -1,9 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
diff --git a/web/.settings/org.eclipse.m2e.core.prefs b/web/.settings/org.eclipse.m2e.core.prefs
deleted file mode 100644
index 14b697b7bbb0d85e8d8ee19141a2a92d9ce211be..0000000000000000000000000000000000000000
--- a/web/.settings/org.eclipse.m2e.core.prefs
+++ /dev/null
@@ -1,4 +0,0 @@
-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1
diff --git a/web/.settings/org.eclipse.wst.common.component b/web/.settings/org.eclipse.wst.common.component
deleted file mode 100644
index a0fffffdcf1eeb7035084b4635afb994cae2c487..0000000000000000000000000000000000000000
--- a/web/.settings/org.eclipse.wst.common.component
+++ /dev/null
@@ -1,49 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="web-1.0">
-        <wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
-        <wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
-        <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/resources"/>
-        <dependent-module archiveName="service-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-service/MapViewer-service">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="model-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-model/MapViewer-model">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="commons-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-commons/MapViewer-commons">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="persist-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-persist/MapViewer-persist">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="model-command-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-model-command/MapViewer-model-command">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="annotation-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-annotation/MapViewer-annotation">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="converter-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-converter/MapViewer-converter">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="converter-CellDesigner-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-converter-CellDesigner/MapViewer-converter-CellDesigner">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="converter-SBGNML-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-converter-SBGNML/MapViewer-converter-SBGNML">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="converter-graphics-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-converter-graphics/MapViewer-converter-graphics">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="converter-sbml-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/converter-sbml/converter-sbml">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="rest-api-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/MapViewer-rest-api/MapViewer-rest-api">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <dependent-module archiveName="frontend-js-1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/frontend-js/frontend-js">
-            <dependency-type>uses</dependency-type>
-        </dependent-module>
-        <property name="java-output-path" value="/MapViewer-web/target/classes"/>
-        <property name="context-root" value="web"/>
-    </wb-module>
-</project-modules>
diff --git a/web/.settings/org.eclipse.wst.common.project.facet.core.prefs.xml b/web/.settings/org.eclipse.wst.common.project.facet.core.prefs.xml
deleted file mode 100644
index 3961d3b7efc4e77a71f5e17f46dc34d2e9c88a6a..0000000000000000000000000000000000000000
--- a/web/.settings/org.eclipse.wst.common.project.facet.core.prefs.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<root>
-  <facet id="jst.jsf">
-    <node name="libprov">
-      <attribute name="provider-id" value="jsf-no-op-library-provider"/>
-    </node>
-  </facet>
-  <facet id="jst.jaxrs">
-    <node name="libprov">
-      <attribute name="provider-id" value="jaxrs-no-op-library-provider"/>
-    </node>
-  </facet>
-</root>
diff --git a/web/.settings/org.eclipse.wst.common.project.facet.core.xml b/web/.settings/org.eclipse.wst.common.project.facet.core.xml
deleted file mode 100644
index a0699df9d4c11eae387c5fe9c66d42f47a06b7d3..0000000000000000000000000000000000000000
--- a/web/.settings/org.eclipse.wst.common.project.facet.core.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <fixed facet="wst.jsdt.web"/>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.web" version="2.5"/>
-  <installed facet="jst.jsf" version="2.0"/>
-  <installed facet="wst.jsdt.web" version="1.0"/>
-  <installed facet="jst.jaxrs" version="1.1"/>
-</faceted-project>
diff --git a/web/.settings/org.eclipse.wst.jsdt.ui.superType.container b/web/.settings/org.eclipse.wst.jsdt.ui.superType.container
deleted file mode 100644
index 3bd5d0a4803967bc0bf72a7dd66d7e292ed2e586..0000000000000000000000000000000000000000
--- a/web/.settings/org.eclipse.wst.jsdt.ui.superType.container
+++ /dev/null
@@ -1 +0,0 @@
-org.eclipse.wst.jsdt.launching.baseBrowserLibrary
\ No newline at end of file
diff --git a/web/.settings/org.eclipse.wst.jsdt.ui.superType.name b/web/.settings/org.eclipse.wst.jsdt.ui.superType.name
deleted file mode 100644
index 05bd71b6ec2c1982d1e8a5653073281994564ae8..0000000000000000000000000000000000000000
--- a/web/.settings/org.eclipse.wst.jsdt.ui.superType.name
+++ /dev/null
@@ -1 +0,0 @@
-Window
\ No newline at end of file
diff --git a/web/.settings/org.eclipse.wst.validation.prefs b/web/.settings/org.eclipse.wst.validation.prefs
deleted file mode 100644
index 6f1cba68d5f82a12e1f80e8798437495567e43e7..0000000000000000000000000000000000000000
--- a/web/.settings/org.eclipse.wst.validation.prefs
+++ /dev/null
@@ -1,2 +0,0 @@
-disabled=06target
-eclipse.preferences.version=1