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minerva
core
Commits
1559bd9d
Commit
1559bd9d
authored
Aug 13, 2020
by
Piotr Gawron
Browse files
Merge branch '1351-escape-xml' into 'devel_15.0.x'
tag order fixed See merge request
!1235
parents
f57e9f63
49fc6c83
Pipeline
#31494
failed with stage
in 18 minutes and 58 seconds
Changes
2
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13
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CHANGELOG
View file @
1559bd9d
...
...
@@ -18,8 +18,10 @@ minerva (15.0.3) stable; urgency=medium
end
for
catalysis
(#
1350
)
*
Bug
fix
:
elements
name
were
not
escaped
properly
when
exporting
to
GPML
(#
1351
)
*
Bug
fix
:
reaction
with
description
and
pubmed
reference
was
incorrectly
exported
to
GPML
(#
1352
)
--
Piotr
Gawron
<
piotr
.
gawron
@
uni
.
lu
>
Wed
,
8
Jul
2020
1
6
:
00
:
00
+
0200
--
Piotr
Gawron
<
piotr
.
gawron
@
uni
.
lu
>
Thu
,
13
Aug
2020
1
5
:
00
:
00
+
0200
minerva
(
15.0.2
)
stable
;
urgency
=
medium
*
Bug
fix
:
annotations
using
identifiers
.
org
urls
sometimes
required
http
and
...
...
pathvisio/src/main/java/lcsb/mapviewer/wikipathway/XML/ModelToGPML.java
View file @
1559bd9d
...
...
@@ -697,10 +697,10 @@ public class ModelToGPML {
StringBuilder
tmp
=
new
StringBuilder
(
""
);
interactions
.
append
(
" <Interaction GraphId=\""
+
reaction
.
getIdReaction
()
+
"\">\n"
);
interactions
.
append
(
biopaxParser
.
toReferenceXml
(
reaction
.
getMiriamData
()));
if
(
reaction
.
getNotes
()
!=
null
)
{
interactions
.
append
(
" <Comment>"
+
StringEscapeUtils
.
escapeXml11
(
reaction
.
getNotes
().
trim
())
+
"</Comment>\n"
);
}
interactions
.
append
(
biopaxParser
.
toReferenceXml
(
reaction
.
getMiriamData
()));
interactions
.
append
(
" <Graphics "
+
"ConnectorType=\"Segmented\" "
+
"ZOrder=\""
+
reaction
.
getZ
()
+
"\" "
...
...
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