Gitlab migration complete. If you have any issue please read the FAQ.

CHANGELOG 54.8 KB
Newer Older
1 2 3
minerva (14.0.12) stable; urgency=medium
  * Bug fix: comments on submaps were not visible (#1230)
  * Bug fix: removing comment from submap did not work
4 5
  * Bug fix: reaction name containing "<" character was exported inproperly to
    CellDesigner (#1227)
Piotr Gawron's avatar
Piotr Gawron committed
6 7
  * Bug fix: doi annotation was inproperly parsed from CellDesigner file and
    resulted in not clickable link (#1231)
8
  * Bug fix: when plugin data was too big 500 error was returned (#1232)
9 10 11

 -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 11 May 2020 17:00:00 +0200

Piotr Gawron's avatar
Piotr Gawron committed
12
minerva (14.0.11) stable; urgency=medium
13 14
  * Bug fix: complex with no border was inproperly imported from CellDesigner 
    (#1198)
15
  * Bug fix: export to CellDesigner deal with CellDesigner issue that does not
16
    allow compartment species alias to be shorter than 2 characters (#1204)
17 18 19 20
  * Bug fix: kinetic parameters with INFINITY values could not be uploaded to
    minerva (#1202)
  * Bug fix: infinity value in kinetic parameter could not be parsed from
    CellDesigner file minerva (#1203)
21 22
  * Bug fix: author list inproperly presented author data when some fields were
    missing (#1201)
23 24
  * Bug fix: refreshing minerva page with more than one plugin opened might
    led to an error due to race condition (#1197)
Piotr Gawron's avatar
Piotr Gawron committed
25

Piotr Gawron's avatar
Piotr Gawron committed
26
 -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 31 Mar 2020 09:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
27

Piotr Gawron's avatar
Piotr Gawron committed
28
minerva (14.0.10) stable; urgency=medium
29
  * Bug fix: reaction without ports in SBGN crashed upload (#1065)
30 31
  * Bug fix: annotations using newer identifiers.org uri schema were truncated
    by one character (#1191)
32
  * Bug fix: long annotation string broke listing of annotations (#1155)
33

34
 -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 16 Mar 2020 14:00:00 +0200
35

36 37 38
minerva (14.0.9) stable; urgency=medium
  * Bug fix: simultanous export to SBML of more than one file could result in
    500 Internal Server Error (#1110)
39 40
  * Bug fix: refresh data overlay did not hide data overlays that were removed
    and selected (#1097)
41
  * Bug fix: transparent complexes are shown with wrong color (#1103)
42 43
  * Bug fix: CellDesigner sometimes marked reduced notation reaction as
    reversible even though they were not visualized so (#1109)
44 45
  * Bug fix: when data overlay was being removed user could request to remove
    overlay second time and an error was thrown (#1121)
46 47
  * Bug fix: when data overlay name in zip uploaded zip file is not present the
    name of a file is used as overlay name (#1065)
48
  * Bug fix: uploading empty data overlay resulted in an error (#1123)
Piotr Gawron's avatar
Piotr Gawron committed
49
  * Bug fix: exporting map with glyphs crashed (#1130)
50 51
  * Bug fix: transcription factor on black&white gene are drawn in black
    (#1132)
52 53 54 55
  * Bug fix: when SBGN file contained consumption starting in process minerva
    crashed (#1063)
  * Bug fix: when SBGN file contained reaction where every node started in the
    same process port minerva crashed crashed (#1063)
Piotr Gawron's avatar
Piotr Gawron committed
56 57 58
  * Bug fix: activity flow reaction inside SBGN PD caused upload of map to
    crash
  * Bug fix: reaction without product in SBGN crashed upload of map
59 60
  * Bug fix: when SBGN production pointed directly to process instead of
    process port upload crashed
61
  * Bug fix: handle properly corrupted cached chembl drug data (#1140)
62

63
 -- Piotr Gawron <piotr.gawron@uni.lu>  Tue, 25 Feb 2020 15:00:00 +0200
64

Piotr Gawron's avatar
Piotr Gawron committed
65
minerva (14.0.8) stable; urgency=medium
66
  * Bug fix: API didn't allow to upload pluins with local url (#1084,
Piotr Gawron's avatar
Piotr Gawron committed
67 68 69
    regression 14.0.7)
  * Bug fix: upload of data overlay with two entries having different uniprot
    identifier but pointing to the same gene crashed (#1083)
70
  * Bug fix: don't allow to remove plugin twice (#1081)
71 72
  * Bug fix: upload of SBML file with very short reaction length could produce
    a map that couldn't be exported to SBML anymore (#1078)
73
  * Bug fix: import of structural state from SBGN-ML PD that cannot be
Piotr Gawron's avatar
Piotr Gawron committed
74 75
    normalized to residue is changed into structural state without losing
    information (#1062)
76 77
  * Bug fix: import of stimulation modifiers from SBGN-ML crashed converter
    (#1063)
Piotr Gawron's avatar
Piotr Gawron committed
78 79
  * Bug fix: export to SBGN files created from newt source produced corrupted
    disconnected reactions
Piotr Gawron's avatar
Piotr Gawron committed
80
  * Bug fix: upload from zip file allowed empty overlay name (#1065)
81 82
  * Bug fix: genome browser slider didn't work properly in Safari on
    non-default Browser zoom level (#1048)
83 84
  * Bug fix: project without background overlay but with some custom data
    overlays crashed with an error (#1066)
85 86
  * Bug fix: when session expires updating options in configuration panel threw
    unhandled error (#1068)
Piotr Gawron's avatar
Piotr Gawron committed
87

Piotr Gawron's avatar
Piotr Gawron committed
88
 -- Piotr Gawron <piotr.gawron@uni.lu>  Tue, 28 Jan 2020 11:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
89

Piotr Gawron's avatar
Piotr Gawron committed
90 91 92 93 94 95
minerva (14.0.7) stable; urgency=high
  * Bug fix: API allowed to provide malformed plugin url that could be used for
    xss attack (#1073)

 -- Piotr Gawron <piotr.gawron@uni.lu>  Tue, 14 Jan 2020 17:00:00 +0200

96 97 98
minerva (14.0.6) stable; urgency=medium
  * Bug fix: opening map with no background overlays and search request in url
    provides proper error message (#1046)
99 100
  * Bug fix: search by identifier didn't consider identifiers added by
    annotators (#1047)
101 102
  * Bug fix: if map has SHOW OVERVIEW, the legend/comment/clear were not
    displayed at all (regresion 14.0.5, #1045)
103 104
  * Bug fix: when there is a problem with database during removing project, 
    project removal doesn't hang (#1058)
105
  * Bug fix: coloring of the reaction wasn't applied to center of reaction
Piotr Gawron's avatar
Piotr Gawron committed
106
    (regression 14.0.0, #1057)
107 108
  * Bug fix: genetic variant overlay improperly processed elements identified
    by miriam identifiers, like uniprot (#1059)
Piotr Gawron's avatar
Piotr Gawron committed
109 110
  * Bug fix: invalid information was provided for genetic variants overlay when
    map organism was defined (#1060)
111

Piotr Gawron's avatar
Piotr Gawron committed
112
 -- Piotr Gawron <piotr.gawron@uni.lu>  Wed, 19 Dec 2019 13:00:00 +0200
113

114 115 116
minerva (14.0.5) stable; urgency=medium
  * Bug fix: copy-paste of genetic-variant data overlay into Add overlay 
    content dialog could crash upload (#1040)
117 118
  * Bug fix: some annotators (like Cazy) were crashing on old installations 
    (#1029)
119 120
  * Bug fix: uploading a map that breaks postgres constraints hung upload of 
    the project (#1028)
121 122 123
  * Bug fix: uploading of the page with low internet connection speed could 
    produce empty screen for several seconds/minutes - now the loading icon is
    present (#1025)
124
  * Bug fix: search for NADH drug resulted in drug with empty name (#1018)
Piotr Gawron's avatar
Piotr Gawron committed
125
  * Bug fix: export to SBML didn't handle properly arrows (#1015)
126
  * Bug fix: Font colour of text area was preserved in Empty view (#1014)
127
  * Bug fix: exported sbml file always contain model identifier (#1013)
Piotr Gawron's avatar
Piotr Gawron committed
128 129
  * Bug fix: typo allel reverted to allele in overlay data (regression 14.0.0,
    #1012)
Piotr Gawron's avatar
Piotr Gawron committed
130 131
  * Bug fix: after loading/removing too many plugins it was impossible to load
    new plugins (#1011)
132 133 134
  * Bug fix: CLEAR button disappears after legend, comment checkboxes when 
    plugin tab used to much space (#976)

Piotr Gawron's avatar
Piotr Gawron committed
135
 -- Piotr Gawron <piotr.gawron@uni.lu>  Tue, 03 Dec 2019 12:00:00 +0200
136

Piotr Gawron's avatar
Piotr Gawron committed
137
minerva (14.0.4) stable; urgency=high
138 139
  * Bug fix: some SBGN files uploaded to minerva could not be exported to SBML
    due to problems with identifiers used by SBGN (#1006)
140 141
  * Bug fix: upload of data overlay with conflicting overlay types caused error
    (#998)
142 143
  * Bug fix: upload of sbml file with protein modifications inside complex 
    crashed visualization (#966)
144 145
  * Bug fix: list of overlays for admin and curator included also other people
    overlays (regression 14.0.3, #1008)
146 147
  * Bug fix: refresh button did not refresh overlay list after overlay was 
    removed over API (#997)
148

Piotr Gawron's avatar
Piotr Gawron committed
149
 -- Piotr Gawron <piotr.gawron@uni.lu>  Thu, 07 Nov 2019 11:00:00 +0200
150

Piotr Gawron's avatar
Piotr Gawron committed
151
minerva (14.0.3) stable; urgency=medium
152 153
  * Bug fix: default zoom level on main map works even when x or y are
    undefined (#993)
154
  * Bug fix: sbml parser had sometimes problems with combining layout and multi
Piotr Gawron's avatar
Piotr Gawron committed
155
    packages (#966)
Piotr Gawron's avatar
Piotr Gawron committed
156 157
  * Bug fix: parsing of CellDesigner files that contained substanceUnits could
    crash the upload (#985)
158
  * Bug fix: verification of version length added when uploading project
159
    implemented (#978)
160
  * Bug fix: CLEAR button disappeared when plugin tab used to much space (#976)
161
  * Bug fix: removing data overlay refreshes list of overlays in info window
Piotr Gawron's avatar
Piotr Gawron committed
162 163
    (#974)
  * Bug fix: general overlays are always on top of data overlays in info window
164
    (#975)
Piotr Gawron's avatar
Piotr Gawron committed
165 166 167
  * Bug fix: refresh button in overlay panel synchronise list of general and
    user provided data overlays (#975)
  * Bug fix: changing order of data overlays is reflected in info window
168
  * Bug fix: opening map with no available background crashed (#964)
169
  * Bug fix: uploading SBGN file that does not pass xsd validation provides a
170
    warning, but does not fail upload (#937)
171
  * Bug fix: export of the map to SBML that was imported with older version
172
    (below 14.0.0) didn't produce valid SBML (#970)
173 174
  * Bug fix: fields in add project window are reinitialized after each open
    (#963)
175
  * Bug fix: filename case in uploaded zip files is preserved (#964)
176
  * Bug fix: +/- buttons were misaligned in genome browser (#942)
177 178
  * Bug fix: color of links in the left panel was unintentionally changed 
    (#990)
179
  * Bug fix: minerva logo in left panel is centred properly
180
  * Bug fix: width of search button icon was too big
Piotr Gawron's avatar
Piotr Gawron committed
181

Piotr Gawron's avatar
Piotr Gawron committed
182
 -- Piotr Gawron <piotr.gawron@uni.lu>  Wed, 18 Oct 2019 15:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
183

184 185 186 187 188
minerva (14.0.2) stable; urgency=medium
  * Bug fix: Genetic data overlay uploaded prior to 14.0.0 crashed maps (#988)

 -- Piotr Gawron <piotr.gawron@uni.lu>  Wed, 15 Oct 2019 11:00:00 +0200

189 190 191 192 193 194
minerva (14.0.1) stable; urgency=medium
  * Bug fix: maps that were annotated using old Biocompendium annotator could
    not load properly (#986)

 -- Piotr Gawron <piotr.gawron@uni.lu>  Wed, 15 Oct 2019 9:00:00 +0200

195 196 197 198 199 200 201 202 203 204 205 206
minerva (14.0.0) stable; urgency=medium
  * Feature removal: BioCompendium annotator removed (#32)
  * Feature removal: support for tomcat7 removed (#828)
  * Feature: security layer redesigned - privilege types and scope changed
    (#636, #624)
  * Feature: log4j is replaced with log4j2 logging mechanism (#291)
  * Feature: database installed via debian package is done via dbconfig-commons
    (#469)
  * Feature: Replaced connection pool manager C3P0 with better maintained
    Hikari - restart of postgresql database doesn't require restart of tomcat
    (#564)
  * Small improvement: debian package can be installed on debian:buster (#879)
207
  * Small improvement: info window contains information about overlay No (#919)
208 209
  * Small improvement: sorting by columns that doesn't make sense in admin
    panel is disabled (#895)
Piotr Gawron's avatar
Piotr Gawron committed
210
  * Small improvement: version of minerva is visible in map browser panel
211
  * Small improvement: small info about annotator details is available in
212
    select annotators dialog (#923)
213
  * Small improvement: CellDesigner layers are always visualized as pathways
Piotr Gawron's avatar
Piotr Gawron committed
214
    (#813)
215 216
  * Small improvement: notification email uses minerva name and id of affected
    project (#926)
217
  * Small improvement: information about person who uploaded project is visible
Piotr Gawron's avatar
Piotr Gawron committed
218
    in list of projects (#927)
219
  * Small improvement: tab with list of glyphs is available when adding project
Piotr Gawron's avatar
Piotr Gawron committed
220
    with glyphs (#925)
221
  * Small improvement: BackgroundColor parameter should be assigned using ":"
222
    character (#929)
223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251
  * Small improvement: anonymous login is no longer required - each API query
    outside session is authorized with anonymous user privileges (#629)
  * Small improvement: bcrypt is used for password encryption (#387)
  * Small improvement: caching is active by default for new users when
    uploading project (#202)
  * Small improvement: when removing overlay in admin panel there is a
    confirmation dialog (#696)
  * Small improvement: overlay name is obligatory (#698)
  * Small improvement: list of projects in admin panel contains creation date
    (#447)
  * Small improvement: links in list of publications open in new tab (#447)
  * Small improvement: target gene in search panel contains also information
    about type of database that identifies the target (#66)
  * Small improvement: redundant 'references' field in gene variants data
    overlay is now deprecated (#850)
  * Small improvement: information about deprecated columns in data overlay is
    visible in overlay list (#838)
  * Small improvement: publication list is resizeable (#740)
  * Small improvement: user list on project edit dialog is sortable (#808)
  * Bug fix: exported SBML passes online validation (#831)
  * Bug fix: allow user to remove own comments (#931)
  * Bug fix: validation of project name length is provided (#950)
  * Bug fix: list of "Copy from" elements in "Select valid annotations" dialog 
    is shortened to used bio entity types (#911)
  * Bug fix: version of the project is limited to 20 characters (#951)
  * Bug fix: export to CD could misalign reaction lines that were imported from
    format that didn't require reaction line to be attached to the species (#933)
  * Bug fix: problem with uploading data_overlays with type included in header
    (#936)
252
  * Bug fix: work on FF Private Window mode could cause logout or raise an
253
    error on when opening new tab with minerva (#892)
254
  * Bug fix: fetching list of miRnas resulted sometimes in "Internal Server
255
    Error" (#889)
Piotr Gawron's avatar
Piotr Gawron committed
256
  * Bug fix: edit project dialog verifies organism id  (#914)
257
  * Bug fix: all colors in boolean reaction (from CellDesigner) are processed
Piotr Gawron's avatar
Piotr Gawron committed
258
    properly (#907)
259 260
  * Bug fix: proper line type for boolean reaction is used on the whole
    reaction (#908)
261 262
  * Bug fix: creating project with too long name hung upload (#916)
  * Bug fix: too long user login threw an error (#915)
263
  * Bug fix: when uploading generic data overlay the type was not updated in
Piotr Gawron's avatar
Piotr Gawron committed
264
    case the type was not specified in the input file (#906)
265
  * Bug fix: list of types when copying from annotators contains only types
Piotr Gawron's avatar
Piotr Gawron committed
266
    that are selectable in the dialog (#911)
Piotr Gawron's avatar
Piotr Gawron committed
267
  * Bug fix: too long name for data overlay in info window is trimmed (#919)
Piotr Gawron's avatar
Piotr Gawron committed
268
  * Bug fix: too long name in general overlay list is wrapped (#857)
269
  * Bug fix: after genome is removed list of genomes is refreshed (#922)
Piotr Gawron's avatar
Piotr Gawron committed
270
  * Bug fix: REST API bioEntities:search method didn't limit results to the
Piotr Gawron's avatar
Piotr Gawron committed
271
    submodel id (#860)
272
  * Bug fix: Empty Overlay colours were not preserved during export to
Piotr Gawron's avatar
Piotr Gawron committed
273
    CellDesigner (#714)
Piotr Gawron's avatar
Piotr Gawron committed
274
  * Bug fix: problem with unloading plugin is properly handled (#884)
Piotr Gawron's avatar
Piotr Gawron committed
275
  * Bug fix: upload of invalid plugin doesn't add it to plugin tab and list of
276
    loaded plugins (#885)
277 278 279
  * Bug fix: export to CellDesigner of reaction with two modifiers connected
    with boolean operator resulted was skipping some layout information
  * Bug fix: reaction in SBGNML file containing two products was improperly
Piotr Gawron's avatar
Piotr Gawron committed
280
    drawn
281
  * Bug fix: color handling in CellDesigner did not work properly for modifiers
282 283
    inside boolean gateway
  * Bug fix: CellDesigner file exported from minerva was not fully compliant
Piotr Gawron's avatar
Piotr Gawron committed
284
    with SBML standard (#831)
285
  * Bug fix: MiRNA targets are limited only to the organism associated with the
286
    map (#66)
287
  * Bug fix: Search drug by target element did not return values when this
288
    element was annotated automatically (#216)
Piotr Gawron's avatar
Piotr Gawron committed
289

290
 -- Piotr Gawron <piotr.gawron@uni.lu>  Wed, 09 Oct 2019 12:00:00 +0200
291

Piotr Gawron's avatar
Piotr Gawron committed
292
minerva (13.2.0) stable; urgency=medium
293
  * Small improvement: MolArt v1.4 is used which provide information from
Piotr Gawron's avatar
Piotr Gawron committed
294
    PredictProtein (#913)
295 296 297 298
  * Bug fix: search by drugs didn't check synonyms in chembl database
  * Bug fix: verification of overlay type added (#917)
  * Bug fix: opening edit project/user dialog returned list of users/projects
    to the 1st page (#909)
299 300
  * Bug fix: show element title option wasn't influencing title visibility
    (#910)
Piotr Gawron's avatar
Piotr Gawron committed
301

Piotr Gawron's avatar
Piotr Gawron committed
302
 -- Piotr Gawron <piotr.gawron@uni.lu>  Thu, 29 Aug 2019 17:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
303 304 305 306 307 308 309 310 311

minerva (13.1.3) stable; urgency=medium
  * Bug fix: refreshing list of projects or list of users doesn't change active
    page (#870)
  * Bug fix: submap list must be selected to export from every submap (#874)
  * Bug fix: export map as image properly uses bottom limit (#875)
  * Bug fix: reaction info window wasn't closed on CLEAR (#876)
  * Bug fix: name of the uploaded file is displayed when adding overlay (#849)

Piotr Gawron's avatar
Piotr Gawron committed
312
 -- Piotr Gawron <piotr.gawron@uni.lu>  Wed, 14 Aug 2019 17:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
313

Piotr Gawron's avatar
Piotr Gawron committed
314 315
minerva (13.1.2) stable; urgency=medium
  * Bug fix: Information about problematic zip file is more specific (#865)
316
  * Bug fix: Url didn't contain list of opened plugins and they weren't reload
317
    automatically on refresh (#866)
Piotr Gawron's avatar
Piotr Gawron committed
318

319
 -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 22 Jul 2019 17:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
320

321 322
minerva (13.1.1) stable; urgency=medium
  * Bug fix: adding gene mapping before the genome caused an error (#835)
323
  * Bug fix: "Terms of Use" change to "Terms of Service" in all places (#843)
324
  * Bug fix: upgrade to 13.1.0 crashed on machines where every element was
325
    inside compartment (#856)
326
  * Bug fix: searching for some drugs in chembl didn't provide any results even
327
    though that data exists, for instance 'DORLIMOMAB ARITOX' (#842)
328
  * Bug fix: user wasn't logged out in all tabs when the log out event appeard
329
    in only one of them (#847)
330

Piotr Gawron's avatar
Piotr Gawron committed
331
 -- Piotr Gawron <piotr.gawron@uni.lu>  Tue,  2 Jul 2019 19:00:00 +0200
332

Piotr Gawron's avatar
Piotr Gawron committed
333
minerva (13.1.0) stable; urgency=medium
Piotr Gawron's avatar
Piotr Gawron committed
334
  * Feature: annotators are more flexible - you can define set of input and
335
    outputs used by annotator (#617)
Piotr Gawron's avatar
Piotr Gawron committed
336 337
  * Feature: changes in admin panel doesn't require saving - they are saved
    automatically (#676)
Piotr Gawron's avatar
Piotr Gawron committed
338
  * Feature: elements can have custom glyphs used for visualization (#487)
339
  * Small improvement: model_name renamed to map_name in data overlay columns
Piotr Gawron's avatar
Piotr Gawron committed
340
    (#827)
341 342
  * Small improvement: name, type, reference_genome_type and
    reference_genome_version column in genetic variant data overlay are
Piotr Gawron's avatar
Piotr Gawron committed
343
    deprecated (#827)
344
  * Small improvement: all bio entities have z-index associated with them
Piotr Gawron's avatar
Piotr Gawron committed
345
    (#487)
Piotr Gawron's avatar
Piotr Gawron committed
346 347
  * Small improvement: validation of the organism and disease id on map upload
    added (#618)
Piotr Gawron's avatar
Piotr Gawron committed
348
  * Small improvement: added current username next to logout button in admin
349
    panel (#660)
Piotr Gawron's avatar
Piotr Gawron committed
350
  * Small improvement: New comment dialog does not contain content of previous
351
    comment dialog (#680)
Piotr Gawron's avatar
Piotr Gawron committed
352
  * Small improvement: Left logo is configurable (#731)
353
  * Small improvement: list of element types in choose annotator dialog is
Ewa Smula's avatar
Ewa Smula committed
354
    sorted (#798)
355 356
  * Small improvement: Plugin API provides list of overview images (#702)
  * Small improvement: Plugin API allows to show/hide overview images (#702)
357
  * Small improvement: Plugin API allows to trigger search on the map (#702)
Piotr Gawron's avatar
Piotr Gawron committed
358
  * Small improvement: Plugin API allows to clear search results on map (#702)
Piotr Gawron's avatar
Piotr Gawron committed
359
  * Small improvement: edit/remove project button is disabled until project is
360
    uploaded (#683)
Piotr Gawron's avatar
Piotr Gawron committed
361
  * Small improvement: warning about capslock is visible on login page when
362
    necessary (#658)
Piotr Gawron's avatar
Piotr Gawron committed
363
  * Small improvement: names of columns in data overlay are unified: no
Piotr Gawron's avatar
Piotr Gawron committed
364
    whitespace, "_" used as separator (#596)
365 366
  * Small improvement: list of references in drug panel contains PUBMED prefix
    (#666)
Piotr Gawron's avatar
Piotr Gawron committed
367
  * Small improvement: list of projects is auto refreshed every 5 seconds if at
368
    least one of the project is uploading/removing (#610)
Piotr Gawron's avatar
Piotr Gawron committed
369
  * Small improvement: passwords to email account and ldap are not sent over
Piotr Gawron's avatar
Piotr Gawron committed
370
    API (#732)
Piotr Gawron's avatar
Piotr Gawron committed
371
  * Small improvement: reactant/product/modifier specific colors are parsed
Piotr Gawron's avatar
Piotr Gawron committed
372
    properly from CellDesigner file (#597)
Piotr Gawron's avatar
Piotr Gawron committed
373
  * Small improvement: Info tab contains information about disease and
374
    organism when info is provided
Piotr Gawron's avatar
Piotr Gawron committed
375 376 377
  * Small improvement: Info tab provides information about model annotations
    and submap tabs provide information about submaps annotations if applicable
    (#591)
378 379
  * Small improvement: uploading sbml file should automatically discover a file
    type (#784)
380
  * Small improvement: when plugin listeners crash the system notifies user
381
    about problem with a plugin (#767)
382
  * Small improvement: when exporting reaction and elements there is
Piotr Gawron's avatar
Piotr Gawron committed
383
    possibility to filter by (sub)map (#615)
384
  * Small improvement: during first opening of a map, the zoom level is
Piotr Gawron's avatar
Piotr Gawron committed
385
    automatically computed if no default information is provided (#776)
386
  * Small improvement: when adding new project columns "Root map", "Mapping
Piotr Gawron's avatar
Piotr Gawron committed
387
    file" and "Map type" are merged (#700)
Piotr Gawron's avatar
Piotr Gawron committed
388
  * Small improvement: allow admin to disable CORS check (#802)
389
  * Small improvement: TransparencyZoomLevelVisibility parameter renamed to
390
    SemanticZoomLevelTransparency (#801)
391
  * Small improvement: export/import from SBML support z-index in LAYOUT
392
    extension
393
  * Bug fix: due to blocking of our requests from ctdbase the autocomplete for
Piotr Gawron's avatar
Piotr Gawron committed
394 395 396 397 398 399 400 401
    this database is disabled
  * Bug fix: deprecated columns in data overlay are not visible to the end user
    (#827)
  * Bug fix: invalid color in data overlay provides proper feedback to the user
    (#822)
  * Bug fix: genetic variant overlay without name caused problems (#832)
  * Bug fix: tair locus identifiers were used improperly - instead of id the
    name was used
402
  * Bug fix: plugin tab header wasn't properly resized after adding plugins
Piotr Gawron's avatar
Piotr Gawron committed
403 404 405 406 407 408
    that introduced second line for tab selection (#758)
  * Bug fix: invisible layer shouldn't be shown on the map (#813)
  * Bug fix: list of availbale annotators is sorted alphabetically (#815)
  * Bug fix: redirect url from export panel is fixed (#819)
  * Bug fix: allow to reupload the same file without closing add overlay dialog
    (#833)
409
  * Bug fix: gene_name column is allowed only in the genetic variant data
Piotr Gawron's avatar
Piotr Gawron committed
410 411 412 413 414 415 416
    overlay
  * Bug fix: protein types are sorted properly in "Select valid annotations"
    dialog (#815)
  * Bug fix: if there is a description of (sub)map then it is available in
    info/submap panel (#824)
  * Bug fix: empty type for data overlay is allowed (#827)
  * Bug fix: genetic variants data overlay was ignoring color parameter (#827)
417
  * Bug fix: asynchronous calls on showing/hiding data overlays might cause
Piotr Gawron's avatar
Piotr Gawron committed
418
    problems due to network latency (#830)
Piotr Gawron's avatar
Piotr Gawron committed
419
  * Bug fix: progress bar of gene genome mapping upload is refreshing properly
420
    (#728)
Piotr Gawron's avatar
Piotr Gawron committed
421
  * Bug fix: when editing project Disease and Organism could not be removed
Piotr Gawron's avatar
Piotr Gawron committed
422
    (#616)
Piotr Gawron's avatar
Piotr Gawron committed
423 424 425
  * Bug fix: dashed line partially wasn't dashed in "Unknown Catalysis" and
    "Unknown Inhibition" reactions (#664)
  * Bug fix: "Unknown Catalysis" and "Unknown Inhibition" reaction end is
426
    slightly separated from target phenotype (#664)
427
  * Bug fix: order of genomes in admin panel doesn't change after refreshing
428
    list of genomes (#761)
429
  * Bug fix: fixing situation when Molart started with variation overlay not
Piotr Gawron's avatar
Piotr Gawron committed
430
    having the aa change information
431
  * Bug fix: plugin contect element width is adjusted when link to tabs are
432
    wrapped in more than one line (#758)
Ewa Smula's avatar
Ewa Smula committed
433
  * Bug fix: export to CellDesigner preserve font size (#798)
434
  * Bug fix: layout data was ignored for some reactions when importing from
Piotr Gawron's avatar
Piotr Gawron committed
435
    SBML (#812)
436

Piotr Gawron's avatar
Piotr Gawron committed
437
 -- Piotr Gawron <piotr.gawron@uni.lu>  Thu, 27 Jun 2019 14:00:00 +0200
438

439
minerva (13.0.0) stable; urgency=medium
440 441
  * Bug fix: Since Oracle Java cannot be installed as debian dependency we use
    openjdk-8. Due to this dependency minerva can be no longer installed on
442 443 444 445
    Ubuntu-14 (#223)

 -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 6 May 2019 18:00:00 +0200

Piotr Gawron's avatar
Piotr Gawron committed
446 447
minerva (12.2.3) stable; urgency=medium
  * Bug fix: sorting of entries in "Edit project->overlays" dialog fixed (#790)
448
  * Bug fix: searching of chemicals stopped working due to expired SSL
Piotr Gawron's avatar
Piotr Gawron committed
449
    certificate on https://ctdbase.org/
450
  * Bug fix: remove button is disabled after starting removing of the data
451
    overlay (#791)
452
  * Bug fix: search autocomplete hint could be initially hidden (#793)
453
  * Bug fix: updating terms of use could crash when list of users was removed
454
    in separate tab or by another user (#797)
Piotr Gawron's avatar
Piotr Gawron committed
455
  * Bug fix: name of the checkbox in ADD PROJECT window adjusted (#799)
456 457
  * Bug fix: when user didn't have privileges to remove comments the button was
    active on pages other than page 1 (#792)
Piotr Gawron's avatar
Piotr Gawron committed
458 459
  * Bug fix: export of reaction to SBML didn't work when lines on the map were
    too short (#805)
Piotr Gawron's avatar
Piotr Gawron committed
460 461 462

 -- Piotr Gawron <piotr.gawron@uni.lu>  Wed, 24 Apr 2019 17:00:00 +0200

Piotr Gawron's avatar
Piotr Gawron committed
463
minerva (12.2.2) stable; urgency=medium
464
  * Bug fix: downloading overlays didn't work from admin panel when project
Piotr Gawron's avatar
Piotr Gawron committed
465
    with different id than default map was accessed
466
  * Bug fix: change of owner of the data overlay in admin panel incorrectly
Piotr Gawron's avatar
Piotr Gawron committed
467
    ordered overlays (#777)
468
  * Bug fix: chemical search didn't use updated disease identifier, original
469
    disease id from project upload was used instead (#779)
470
  * Bug fix: user login with special characters (like '@')  could cause
Piotr Gawron's avatar
Piotr Gawron committed
471
    problems in admin panel (#780)
472 473
  * Bug fix: removing project without full control in the system (but with
    enough privileges to remove project) caused "Not enough privileges" error
474
    (#778)
475
  * Bug fix: export of custom properties (like synonyms) are properly encoded
Piotr Gawron's avatar
Piotr Gawron committed
476
    in CellDesigner xml (#785)
477 478 479
  * Bug fix: notification about not supported version in IE 11 fixed (#783)

 -- Piotr Gawron <piotr.gawron@uni.lu>  Tue, 9 Apr 2019 17:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
480

Piotr Gawron's avatar
Piotr Gawron committed
481 482
minerva (12.2.1) stable; urgency=medium
  * Bug fix: export of reaction colorsi in SBML is properly encoded (COPASI can
Piotr Gawron's avatar
Piotr Gawron committed
483 484
    read colors properly) (#744)
  * Bug fix: removing active plugin didn't switch plugin tab to the next loaded
485
    plugin (#757)
Piotr Gawron's avatar
Piotr Gawron committed
486 487
  * Bug fix: closed submap will not be reopened after page refresh (#763)
  * Bug fix: comment remove button is disabled for users without proper
488
    privileges (#766)
Piotr Gawron's avatar
Piotr Gawron committed
489
  * Bug fix: invalid pubmed identifier could break clicking on element
490
    containing it (#764, #765, #769)
Piotr Gawron's avatar
Piotr Gawron committed
491
  * Bug fix: cache for API queries is explicitly disabled - some queries could
492
    be mistakenly cached and the system behaviour might get unstable (#771)
Piotr Gawron's avatar
Piotr Gawron committed
493 494 495

 -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 1 Apr 2019 17:00:00 +0200

Piotr Gawron's avatar
Piotr Gawron committed
496
minerva (12.2.0) stable; urgency=medium
Piotr Gawron's avatar
Piotr Gawron committed
497
  * Feature: bug report utility
Piotr Gawron's avatar
Piotr Gawron committed
498 499
  * Feature: url GET parameters support all kind of search and selected overlays
    highlight
500
  * Feature: user can create custom logging configuration in file
Piotr Gawron's avatar
Piotr Gawron committed
501 502 503 504
    /etc/minerva/log4j.properties
  * Feature: plugin panel in admin allows to configure set of available plugins
  * Feature: import export from SBML supports RENDER package
  * Feature: import export from SBML supports MULTI package
505
  * Feature: API tool providing possibility to transform different types of
Piotr Gawron's avatar
Piotr Gawron committed
506
    file formats
507
  * Feature: current state of the browsed map is reflected in the url (position,
Piotr Gawron's avatar
Piotr Gawron committed
508
    zoom, overlays, search queries, etc.)
Piotr Gawron's avatar
Piotr Gawron committed
509 510 511 512 513
  * Small improvement: highlighting table rows in admin panel uses better
    contrast color (#706)
  * Small improvement: list of publication can be filtered by submap (#614)
  * Small improvement: size of add overlay window adjusted to show more data
    without scrollbars (#657)
Piotr Gawron's avatar
Piotr Gawron committed
514
  * Small improvement: all popup dialogs in the application have dialog
Piotr Gawron's avatar
Piotr Gawron committed
515 516 517
    specific css class names (#665)
  * Small improvement: JS plugin can create listener that is triggered on
    search results focus change
Piotr Gawron's avatar
Piotr Gawron committed
518 519
  * Small improvement: export to SBML includes unit factors
  * Small improvement: mesh identifiers are resolved to meshb.nlm.nih.gov urls
520
  * Small improvement: genetics information allows to provide information about
Piotr Gawron's avatar
Piotr Gawron committed
521
    modification on peptide level that could be visualized in MolArt
522
  * Small improvement: allow to control the background and font color of areas
Piotr Gawron's avatar
Piotr Gawron committed
523
    drawn from text areas in CellDesigner "layers"
524
  * Small improvement: config logo location is relative to the root minerva
Piotr Gawron's avatar
Piotr Gawron committed
525 526
    deployment directory
  * Small improvement: there is branding minerva logo in the left panel
527 528 529 530 531 532 533 534 535 536 537 538
  * Small improvement: there is possibility to download part of the map limited
    to set of reactions/elements
  * Small improvement: allow admin to configure parameters displayed in the
    left panel
  * Small improvement: arrows for Transcription Starting Sites looks more like
    in CellDesigner
  * Small improvement: popup window appear with info about exceeding max number
    of search results when necessary
  * Small improvement: plugins can define default width of the container tab
  * Small improvement: new miriam type is handled: ClinicalTrials.gov
  * Small improvement: click on the border of compartment select the
    compartment
Piotr Gawron's avatar
Piotr Gawron committed
539 540
  * Small improvement: there is max size of the map in configuration panel that
    disables upload of too big files
541
  * Small improvement: hitting enter on login page logs in the user (no need to
Piotr Gawron's avatar
Piotr Gawron committed
542
    click on the login button)
543
  * Small improvement: refresh button in overlays panel (useful when data
Piotr Gawron's avatar
Piotr Gawron committed
544 545 546
    overlays are uploaded separately in using API calls)
  * Small improvement: list of publications is downloadable
  * Small improvement: export of reactions support filtering by reaction type
547
  * Small improvement: 'BACK TO MAP' link is available only when guest account
Piotr Gawron's avatar
Piotr Gawron committed
548 549
    has proper access level
  * Small improvement: 'REQUEST AN ACCOUNT' link is available only the contact
550 551
    email account is provided
  * Small improvement: Plugin API allows to show/hide data overlays
Piotr Gawron's avatar
Piotr Gawron committed
552
  * Bug fix: Icons were sometimes not properly loaded on Safari (#661)
Piotr Gawron's avatar
Piotr Gawron committed
553
  * Bug fix: migration scripts are compatibile with postgres 9.3 version that
Piotr Gawron's avatar
Piotr Gawron committed
554
    is default on Ubuntu 14 (#762)
Piotr Gawron's avatar
Piotr Gawron committed
555
  * Bug fix: update/remove button is disabled when user has no privileges for
Piotr Gawron's avatar
Piotr Gawron committed
556
    managing overlays (#742)
Piotr Gawron's avatar
Piotr Gawron committed
557
  * Bug fix: when user cannot manage users information in overlays and users
Piotr Gawron's avatar
Piotr Gawron committed
558
    tab in edit project dialog is provided instead of hiding tabs (#756)
Piotr Gawron's avatar
Piotr Gawron committed
559 560
  * Bug fix: removing comments in a project asked for confirmation twice after
    edit project dialog for specific project was opened; closed and opened
Piotr Gawron's avatar
Piotr Gawron committed
561 562
    again (#697)
  * Bug fix: editing/removing project requires Map Management privilege (#681)
Piotr Gawron's avatar
Piotr Gawron committed
563
  * Bug fix: when removeAllListeners is called list of registered listeners is
Piotr Gawron's avatar
Piotr Gawron committed
564
    cleaned (#687)
Piotr Gawron's avatar
Piotr Gawron committed
565
  * Bug fix: when plugin is removed the html elements associated with it are
Piotr Gawron's avatar
Piotr Gawron committed
566 567
    removed as well (#686)
  * Bug fix: when creating new user default privileges are set properly (#692)
Piotr Gawron's avatar
Piotr Gawron committed
568
  * Bug fix: plugin can be added after plugin has been removed in admin plugin
Piotr Gawron's avatar
Piotr Gawron committed
569
    panel (#686)
Piotr Gawron's avatar
Piotr Gawron committed
570
  * Bug fix: too many annotations (>=100) caused misaligning in the left panel
Piotr Gawron's avatar
Piotr Gawron committed
571
    (#708)
Piotr Gawron's avatar
Piotr Gawron committed
572 573 574
  * Bug fix: export to svg contains viewBox info (#716)
  * Bug fix: overlays added via API couldn't be visualized after refresh (#718)
  * Bug fix: Safari sometimes cached server responses and used wrong data, for
Piotr Gawron's avatar
Piotr Gawron committed
575 576
    example in admin panel configuration tab (#719)
  * Bug fix: description of transcription site is centered (#720)
Piotr Gawron's avatar
Piotr Gawron committed
577
  * Bug fix: selecting too few parameters in export doesn't throw reportable
Piotr Gawron's avatar
Piotr Gawron committed
578 579 580 581 582 583 584 585 586 587 588 589 590 591 592
    error (#721)
  * Bug fix: providing invalid overlay id in url could break minerva (#726)
  * Bug fix: removing project that doesn't exist doesn't cause 500 error (#723)
  * Bug fix: opening map with invalid id shows proper error message (#724)
  * Bug fix: Fixing an issue where search panel was not properly resized on
    expansion (#682)
  * Bug fix: loading icon is not overlapping input in the search panel (#404)
  * Bug fix: position of transcription sites in genes are computed properly
    (#553)
  * Bug fix: REQUEST AN ACCOUNT was enabled when associated email was invalid
    (#626)
  * Bug fix: working with too many maps within the single session could crash
    connection to server (#651)
  * Bug fix: drawing corrupted heterodimer association in CellDesigner could
    crash map upload (#673)
Piotr Gawron's avatar
Piotr Gawron committed
593
  * Bug fix: export to CellDesigner align inhibition reaction properly
Piotr Gawron's avatar
Piotr Gawron committed
594
  * Bug fix: export/import to/from SBML handles Heterodimer Association
Piotr Gawron's avatar
Piotr Gawron committed
595
    reaction properly
Piotr Gawron's avatar
Piotr Gawron committed
596
  * Bug fix: logo doesn't need to be square
597
  * Bug fix: when clicking on a search link (in overview window), input in the
Piotr Gawron's avatar
Piotr Gawron committed
598
    left tab was not modified
599
  * Bug fix: in admin panel changing of genome version is blocking interface
Piotr Gawron's avatar
Piotr Gawron committed
600
    until data about url is retrieved
601 602
  * Bug fix: export of species inside complex into CellDesigner was causing
    problems when reading the file in CellDesigner
Piotr Gawron's avatar
Piotr Gawron committed
603 604
  * Bug fix: export to SBGN did not export compartments
  * Bug fix: export of complex states to SBGN did not work
605
  * Bug fix: type of the data overlay can be defined in the file content
Piotr Gawron's avatar
Piotr Gawron committed
606 607
    (useful when uploading genetic variants)
  * Bug fix: CLEAR button clears comment checkbox if necessary
Piotr Gawron's avatar
Piotr Gawron committed
608
  * Bug fix: minerva install problem on ubuntu 18 fixed
Piotr Gawron's avatar
Piotr Gawron committed
609

Piotr Gawron's avatar
Piotr Gawron committed
610
 -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 25 Mar 2019 17:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
611

Sascha Herzinger's avatar
Sascha Herzinger committed
612
minerva (12.1.8) stable; urgency=medium
Piotr Gawron's avatar
Piotr Gawron committed
613
  * Bug fix: add a project reset users custom overlays limit to default (#679)
614
  * Bug fix: edit/remove project button was disabled based on Configuration
Piotr Gawron's avatar
Piotr Gawron committed
615
    Manage Privilege, but should be based on Project Manage Privilege (#681)
616
  * Bug fix: another minor problem with updating privileges introduced in
Piotr Gawron's avatar
Piotr Gawron committed
617
    12.1.6 fixed (#659)
Sascha Herzinger's avatar
Sascha Herzinger committed
618

Piotr Gawron's avatar
Piotr Gawron committed
619 620
 -- Piotr Gawron <piotr.gawron@uni.lu>  Fri, 8 Feb 2019 15:30:00 +0200

Piotr Gawron's avatar
Piotr Gawron committed
621 622 623 624 625
minerva (12.1.7) stable; urgency=medium
  * Bug fix: problems with updating privileges introduced in 12.1.6 fixed

 -- Piotr Gawron <piotr.gawron@uni.lu>  Wed, 6 Feb 2019 15:30:00 +0200

Piotr Gawron's avatar
Piotr Gawron committed
626 627
minerva (12.1.6) stable; urgency=medium
  * Bug fix: logo on login page was broken with image link being full url
Piotr Gawron's avatar
Piotr Gawron committed
628 629
  * Bug fix: plugin API had sometimes problems with fetching reactions
    properly
Piotr Gawron's avatar
Piotr Gawron committed
630 631
  * Bug fix: upload of data overlays without privileges triggers proper
    error message also in situation when user cannot create projects
Piotr Gawron's avatar
Piotr Gawron committed
632 633
  * Bug fix: first login on website when there is Term of use to accept
    raised error for regular users
Piotr Gawron's avatar
Piotr Gawron committed
634
  * Bug fix: fetching some drugs via API could cause 500
Piotr Gawron's avatar
Piotr Gawron committed
635

Piotr Gawron's avatar
Piotr Gawron committed
636
 -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 28 Jan 2019 16:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
637

Piotr Gawron's avatar
Piotr Gawron committed
638 639 640 641 642
minerva (12.1.5) stable; urgency=medium
  * Bug fix: Drugbank changed output format which crashed drug connector
  * Bug fix: word wrapping fixed in overlay table for long overlay names
    in Firefox browser

Piotr Gawron's avatar
Piotr Gawron committed
643
 -- Piotr Gawron <piotr.gawron@uni.lu>  Thu, 10 Jan 2019 14:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
644

645
minerva (12.1.4) stable; urgency=medium
Piotr Gawron's avatar
Piotr Gawron committed
646
  * Bug fix: no check for limit on custom data overlays fixed
647
  * Bug fix: error message improved when there is privilege problem during
Piotr Gawron's avatar
Piotr Gawron committed
648
    data overlay upload
Piotr Gawron's avatar
Piotr Gawron committed
649
  * Bug fix: upload of data overlay from admin panel didn't work
650
  * Bug fix: add project button is disabled when user doesn't have proper
Piotr Gawron's avatar
Piotr Gawron committed
651
    privileges ("Add project" privilege)
652
  * Bug fix: there are no more extra markers due to map wrapping
653 654
  * Bug fix: upload of the project failed when another project was removed
    during upload
Piotr Gawron's avatar
Piotr Gawron committed
655
  * Bug fix:  word wrapping fixed in overlay table for long overlay names
656 657 658

 -- Piotr Gawron <piotr.gawron@uni.lu>  Fri, 28 Dec 2018 14:00:00 +0200

Piotr Gawron's avatar
Piotr Gawron committed
659 660 661
minerva (12.1.3) stable; urgency=medium
  * Bug fix: add project button is disabled when user has no privileges
  * Bug fix: projectId was missing in the edit window
Piotr Gawron's avatar
Piotr Gawron committed
662 663 664 665
  * Bug fix: user could provide invalid mesh ID that caused errors when
    browsing map
  * Bug fix: user created from LDAP connection doesn't have a password
    stored in the database
Piotr Gawron's avatar
Piotr Gawron committed
666 667 668

 -- Piotr Gawron <piotr.gawron@uni.lu>  Fri, 14 Dec 2018 14:00:00 +0200

Piotr Gawron's avatar
Piotr Gawron committed
669 670 671
minerva (12.1.2) stable; urgency=medium
  * Bug fix: vmh annotations should be properly matching id entered in the input
  * Bug fix: opacity was not working when highliting objects in plugins
Piotr Gawron's avatar
Piotr Gawron committed
672
  * Bug fix: integer configurtion options (like SMTP_PORT) are properly
Piotr Gawron's avatar
Piotr Gawron committed
673 674
    validated before saving
  * Bug fix: inside of reaction box wasn't properly aligned
Piotr Gawron's avatar
Piotr Gawron committed
675
  * Bug fix: too long data overlay name disturbed size of the map div and
Piotr Gawron's avatar
Piotr Gawron committed
676 677 678 679 680
    interaction with the map
  * Bug fix: search for some drugs resulted in internal server error
  * Bug fix: LDAP login is case insensitive
  * Bug fix: adding user could end up with error in the frontend

Piotr Gawron's avatar
Piotr Gawron committed
681
 -- Piotr Gawron <piotr.gawron@uni.lu>  Wed, 12 Dec 2018 16:00:00 +0200
Piotr Gawron's avatar
Piotr Gawron committed
682

Piotr Gawron's avatar
Piotr Gawron committed
683
minerva (12.1.1) stable; urgency=medium
Piotr Gawron's avatar
Piotr Gawron committed
684 685 686 687 688 689 690 691 692
  * Bug fix: lineWidth in data overlays was ignored
  * Bug fix: legend was blinking after using controls
  * Bug fix: comment header was missing
  * Bug fix: click on drug target zooms to the results
  * Bug fix: export columns return proper value types
  * Bug fix: partial zooming is disabled

 -- Piotr Gawron <piotr.gawron@uni.lu>  Fri, 2 Nov 2018 13:00:00 +0200

Piotr Gawron's avatar
Piotr Gawron committed
693
minerva (12.1.0) stable; urgency=medium
Piotr Gawron's avatar
Piotr Gawron committed
694 695 696 697
  * Small improvement: default privilege value for 'Custom overlays' added
  * Small improvement: explicit logging of successful and unsuccessful logins
  * Small improvement: clicking on search result icon (on the map) change tab to 
    the corresponding search results
698
  * Small improvement: option to remove additional overlays generated by custom
Piotr Gawron's avatar
Piotr Gawron committed
699
    semantic zoom
700
  * Small improvement: 'Reduced modulation' edge was displayed differently in
Piotr Gawron's avatar
Piotr Gawron committed
701 702 703
    CellDesigner and Minerva
  * Small improvement: user-friendly documentation for plugin URL field
  * Small improvement: plugins have to access information about active submap
704 705 706 707
  * Feature: genome browser with gene variants
  * Feature: support of all CellDesigner element modifications
  * Feature: ldap authentication
  * Feature: multicolored anchors for data overlays
Piotr Gawron's avatar
Piotr Gawron committed
708
  * Feature: minerva is distributed using rpm packages