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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" 
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml"
	xmlns:h="http://java.sun.com/jsf/html"
	xmlns:f="http://java.sun.com/jsf/core"
	xmlns:ui="http://java.sun.com/jsf/facelets"
	xmlns:p="http://primefaces.org/ui"
	xmlns:c="http://java.sun.com/jsp/jstl/core"
	>

<f:view contentType="text/html">

 
<h:head>
	<title>#{mapMB.currentProject.name}</title>
	
	<!-- Google Maps API version 3.20	-->
	<script src="https://maps.google.com/maps/api/js?libraries=drawing&amp;v=3.22" type="text/javascript"/>
	
	<link rel="shortcut icon" href="./resources/images/favicon.png" type="image/png" />

<!-- log4javascript library -->
	<h:outputScript library="js" name="log4javascript.js"  />
<!-- configuration for log4javascript -->
	<h:outputScript library="js" name="LogConfig.js"  />

	<h:outputScript library="js" name="ObjectWithListeners.js"/>
	
	<h:outputScript library="js" name="AbstractCustomMap.js" />
	<h:outputScript library="js" name="AbstractInfoWindow.js"/>
	<h:outputScript library="js" name="AbstractMarker.js"/>  
	<h:outputScript library="js" name="AbstractOverlayElement.js"/>  
	<h:outputScript library="js" name="Alias.js" />
	<h:outputScript library="js" name="AliasInfoWindow.js" />
	<h:outputScript library="js" name="AliasMarker.js" />
	<h:outputScript library="js" name="AliasOverlay.js" />
	<h:outputScript library="js" name="Configuration.js" />
	<h:outputScript library="js" name="CustomMap.js" />
	<h:outputScript library="js" name="CustomMapOptions.js" />
	<h:outputScript library="js" name="Functions.js" />
	<h:outputScript library="js" name="GeneVariant.js" />
	<h:outputScript library="js" name="GuiConnector.js" />
	<h:outputScript library="js" name="IdentifiedElement.js" />
	<h:outputScript library="js" name="LayoutAlias.js" />
	<h:outputScript library="js" name="LayoutData.js" />
	<h:outputScript library="js" name="LayoutReaction.js" />
	<h:outputScript library="js" name="MapModel.js"/>
	<h:outputScript library="js" name="OverlayCollection.js" />
	<h:outputScript library="js" name="pileup.js"/>
	<h:outputScript library="js" name="PointData.js"/>
	<h:outputScript library="js" name="PointInfoWindow.js"/>
	<h:outputScript library="js" name="PointMarker.js"/>
	<h:outputScript library="js" name="Reaction.js" />
	<h:outputScript library="js" name="ReactionMarker.js" />
	<h:outputScript library="js" name="ReactionInfoWindow.js" />
	<h:outputScript library="js" name="ReactionOverlay.js" />
	<h:outputScript library="js" name="ReferenceGenome.js" />
	<h:outputScript library="js" name="ReferenceGenomeGeneMapping.js" />
	<h:outputScript library="js" name="SearchPanel.js" />
	<h:outputScript library="js" name="ServerConnector.js" />
	<h:outputScript library="js" name="Submap.js" />
	<h:outputScript library="js" name="TabNavi.js" />
 	<h:outputScript library="js" name="TouchMap.js" />
	
	<ui:include src="/WEB-INF/components/map/statistics.xhtml" />

	<script type="text/javascript">
//<![CDATA[
		var DEBUG_ON =false;

		if (browser.name=="IE") {
			if (browser.version<=8 || browser.compatibilityMode) {
				alert("This webpage works only with Internet Explorer version 9 or greater.\n" +
							"If you have Internet Explorer version 9 or greater and still see this message, please, turn the 'Compatibility modeoff:\n" +
							"Open Internet Explorer and press the Alt key on your keyboard.\n" +
							"Select 'Tools' menu item. \n" +
							"Select the 'Compatibility View' settings option. \n" +
							"Make sure the 'Display all websites in Compatibility View' check box is unchecked and that the 'Compatibility View; list of websites is cleared.\n" +
							"\n"+
							"Alternatively, please, use other browsers: Chrome, Firefox or Safari.");
			}
		}
 	var configuration = new Configuration();

function processUrlGetParams() {
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	if (GuiConnector.getParams["submap"]==null || configuration.ID_MODEL==GuiConnector.getParams["submap"]) {
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		if (GuiConnector.getParams["x"]!=undefined && GuiConnector.getParams["y"]!=undefined){
			ServerConnector.setCenterCoordinateX(GuiConnector.getParams["x"]);
			ServerConnector.setCenterCoordinateY(GuiConnector.getParams["y"]);
		}
		if (GuiConnector.getParams["zoom"]!=undefined){
			ServerConnector.setZoomLevel(GuiConnector.getParams["zoom"]);
		}
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	}
}

function updateConfig() {
	var json = document.getElementById('configurationForm:configurationGson').value;
//there are some strange problems here...
	json = json.replace(/\n/g," ");
	configuration.loadFromModelView(JSON.parse(json));
}					
					 
function initMap(){
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	updateConfig();
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	processUrlGetParams();


	searchPanel = new SearchPanel(document.getElementById('tabView:mainForm:searchText_input'), 
																document.getElementById('tabView:mainForm:searchButton'),
																function(){
																	tabViewVar.select(0);
																}
															 );
	
	var mapElement = gmtls.getMap();
	if (configuration.MAPS!=null) {

		var windowsTouchInterface = ((navigator.appVersion.indexOf("Win")!=-1) && ('ontouchstart' in document.documentElement)); 
		var overviewDiv = document.getElementById("overviewDiv");
	  customMap = new CustomMap({
		    map : mapElement, 
		    configuration : configuration, 
		    hideDiv : document.getElementById('leftPanel'), 
		    markerOptimization : !windowsTouchInterface, 
		    bigLogo : windowsTouchInterface, 
		    overviewDiv : overviewDiv,
		    customTouchInterface: windowsTouchInterface
		});
	
    ServerConnector.setCustomMap(customMap);  
		GuiConnector.showGoogleMap();
		
		ServerConnector.addOverlayCollection(new OverlayCollection(customMap, "search"));
		ServerConnector.addOverlayCollection(new OverlayCollection(customMap, "missingConnection"));
		ServerConnector.addOverlayCollection(new OverlayCollection(customMap, "drug",true, true));
		ServerConnector.addOverlayCollection(new OverlayCollection(customMap, "chemical",#{chemicalMB.linkedToDisease()}, #{chemicalMB.linkedToDisease() == true}));
		ServerConnector.addOverlayCollection(new OverlayCollection(customMap, "mirna",true, true));
		ServerConnector.addOverlayCollection(new OverlayCollection(customMap, "comment",false, true));
		
		customMap.refreshOverlays();

		
		if (GuiConnector.getParams["search"]!=undefined) {
			searchPanel.search(GuiConnector.getParams["search"]);
		}
		
		if (GuiConnector.getParams["comments"]=="on") {
			document.getElementById('comment_checkbox').click();
		}
		if (GuiConnector.getParams["layout"]!=undefined) {
			document.getElementById('tabView:layoutForm3:hidden2').value=GuiConnector.getParams["layout"];
			getVisualizedLayoutDetails();
		}

  }
	//when I try to hide legend from the beginning or in the same thread it's hidden forever... ;/
	setTimeout(function() {
		GuiConnector.hideLegend();
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		var submodelId = GuiConnector.getParams["submap"];
		if (submodelId!=undefined) {
			_createSubmodelDialog([{name:'submodelId', value: submodelId}]);
			//for some reason the call above is not sync (even though it's required)
			var waitingForResponse = setInterval(function() {
				if (GuiConnector.getJsPopupForSubmodelId(submodelId)!=null) {
					GuiConnector.openDialog(submodelId);
					clearInterval(waitingForResponse);
					if (GuiConnector.getParams["zoom"]!=undefined){
						customMap.setZoom(submodelId,parseInt(GuiConnector.getParams["zoom"]));
					}
					if (GuiConnector.getParams["x"]!=undefined && GuiConnector.getParams["y"]!=undefined){
						var x = GuiConnector.getParams["x"];
						var y = GuiConnector.getParams["y"];
						var point = new google.maps.Point(x, y);
						customMap.setCenter(submodelId,point);
					}
				}
			},100);
		}
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	}, 0);
}


function removeMissingConnection(id) {
	document.getElementById('missingConnectionForm:connectionId').value=""+id;
	dlg4.show();
}

function removeComment(id) {
	document.getElementById('missingConnectionForm:commentId').value=""+id;
	dlg5.show();
}


//]]>
		</script>
</h:head>
<h:body onload="initMap();" >
<h:outputStylesheet library="css" name="style.css"/>
<h:outputStylesheet library="css" name="pileup.css"/>

	<h:outputScript library="primefaces" name="jquery/jquery.js" target="head"	/>
	<div class = "containerClass">
		<div id="leftPanel" class ="leftPanelClass">
		
		<ui:include src="/WEB-INF/components/admin/header.xhtml" />
		
<!--		<div class="tabNavigation">
		<a href="javascript:;" onclick="GuiConnector.tabNaviShow('prev');" class="naviLeft"><i class="fa fa-chevron-left"></i></a>
		<a href="javascript:;" onclick="GuiConnector.tabNaviShow('next');" class="naviRight"><i class="fa fa-chevron-right"></i></a>
		</div>
-->

			<p:tabView id="tabView" widgetVar="tabViewVar" styleClass="leftTabView" activeIndex="0" >	
				<p:tab id="searchTab" title="&lt;div class='tngContainer'&gt;&lt;div class='tng'&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class='maintabdiv'&gt;&lt;i class='fa fa-search maintab'&gt;&lt;/i&gt;&lt;br&gt;SEARCH&lt;/div&gt;" styleClass="leftTab">
					<ui:include src="/WEB-INF/components/map/searchPanel.xhtml" />
				</p:tab >	
				<p:tab id="drugTab" title="&lt;div class='tngContainer'&gt;&lt;div class='tng'&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class='maintabdiv'&gt;&lt;i class='fa fa-map-marker maintab'&gt;&lt;/i&gt;&lt;br&gt;DRUG&lt;/div&gt;" styleClass="leftTab">	
					<ui:include src="/WEB-INF/components/map/drugPanel.xhtml" />
				</p:tab >	
				<p:tab id="chemicalTab" title="&lt;div class='tngContainer'&gt;&lt;div class='tng'&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class='maintabdiv'&gt;&lt;i class='fa fa-map-marker maintab'&gt;&lt;/i&gt;&lt;br&gt;CHEMICAL&lt;/div&gt;" styleClass="leftTab">	
					<ui:include src="/WEB-INF/components/map/chemicalPanel.xhtml" />
				</p:tab >
				<p:tab id="miRNATab" title="&lt;div class='tngContainer'&gt;&lt;div class='tng'&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class='maintabdiv'&gt;&lt;i class='fa fa-map-marker maintab'&gt;&lt;/i&gt;&lt;br&gt;MiRNA&lt;/div&gt;" styleClass="leftTab">	
					<ui:include src="/WEB-INF/components/map/miRNAPanel.xhtml" />
				</p:tab >
				<p:tab id="layoutTab" title="&lt;div class='tngContainer'&gt;&lt;div class='tng'&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class='maintabdiv'&gt;&lt;i class='fa fa-th-list maintab'&gt;&lt;/i&gt;&lt;br&gt;OVERLAYS&lt;/div&gt;" styleClass="leftTab">
					<ui:include src="/WEB-INF/components/map/layoutPanel.xhtml" />
				</p:tab >	
				<p:tab id="loginTab" title="&lt;div class='tngContainer'&gt;&lt;div class='tng'&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class='maintabdiv'&gt;&lt;i class='fa fa-sign-in maintab'&gt;&lt;/i&gt;&lt;br&gt;LOGIN&lt;/div&gt;" styleClass="leftTab" rendered ="#{userMB.loggedUser.login=='anonymous'}">	
					<ui:include src="/WEB-INF/components/map/loginPanel.xhtml" />
				</p:tab >	
				<p:tab id="profileTab" title="&lt;div class='tngContainer'&gt;&lt;div class='tng'&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class='maintabdiv'&gt;&lt;i class='fa fa-user maintab'&gt;&lt;/i&gt;&lt;br&gt;PROFILE&lt;/div&gt;" styleClass="leftTab" rendered ="#{not (userMB.loggedUser.login=='anonymous')}">	
					<ui:include src="/WEB-INF/components/map/profilePanel.xhtml" />
				</p:tab >	
				<p:tab id="submapTab" title="&lt;div class='tngContainer'&gt;&lt;div class='tng'&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class='maintabdiv'&gt;&lt;i class='fa fa-sitemap maintab'&gt;&lt;/i&gt;&lt;br&gt;SUBMAPS&lt;/div&gt;" styleClass="leftTab">	
					<ui:include src="/WEB-INF/components/map/submapPanel.xhtml" />
				</p:tab >	
				<p:tab id="infoTab" title="&lt;div class='tngContainer'&gt;&lt;div class='tng'&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class='maintabdiv'&gt;&lt;i class='fa fa-info maintab'&gt;&lt;/i&gt;&lt;br&gt;PROJECT&lt;/div&gt;" styleClass="leftTab">	
					<ui:include src="/WEB-INF/components/map/infoPanel.xhtml" />
				</p:tab >	
			</p:tabView >
			
			
			<div id="footerLinks">
			 <a href="admin.xhtml?id=#{mapMB.currentMapId}" style="float:left; padding-left:25px;"><i class="fa fa-lock" style="font-size:17px"></i> &nbsp;ADMIN</a>
			 <a href="#{configurationMB.userManual}" target="_user_manual_" style="float:left; padding-left:50px;"><i class="fa" style="font-size:17px"></i> &nbsp;MANUAL</a>
			 <a href="export.xhtml?id=#{mapMB.currentMapId}" style="float:right; padding-right:25px;">EXPORT&nbsp; <i class="fa fa-mail-forward" style="font-size:17px"></i></a>
			</div>
				
		</div>
		<div>
			<ui:include src="/WEB-INF/components/map/map.xhtml" />
		</div>
	</div>

	<!--<ui:include src="/WEB-INF/components/map/footer.xhtml" />-->
			
	<ui:include src="/WEB-INF/components/map/feedbackDialog.xhtml" />
	<ui:include src="/WEB-INF/components/map/missingConnectionDialog.xhtml" />

</h:body>
</f:view>
</html>