pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>

	<groupId>lcsb.mapviewer</groupId>
	<artifactId>parent</artifactId>
	<version>16.1.0~alpha.0</version>
	<packaging>pom</packaging>

	<name>parent MapViewer</name>

	<properties>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>

		<log4j2.version>2.11.2</log4j2.version>
		<log4j-jcl-version>2.11.2</log4j-jcl-version>

		<mail-version>1.4.7</mail-version>

		<xercesImp.version>2.12.0</xercesImp.version>
		<xalan.version>2.7.2</xalan.version>

		<jaxws.version>2.3.0</jaxws.version>
		<jaxws-api.version>2.3.0</jaxws-api.version>
		<jaxb.version>2.3.0</jaxb.version>
		<txw2.version>2.3.0</txw2.version>
		<activation-version>1.1</activation-version>

		<apache.httpcomponents.version>4.5.8</apache.httpcomponents.version>
		<apache.httpcomponents-core.version>4.4.11</apache.httpcomponents-core.version>
		<!-- version 4.x has conflict on dependencies with jsbml 1.4 -->
		<apache.poi.version>3.16</apache.poi.version>
		<commons-codec.version>1.11</commons-codec.version>

		<mockito.version>2.27.0</mockito.version>

		<springframework.version>5.0.9.RELEASE</springframework.version>
		<springframework.security.version>5.0.8.RELEASE</springframework.security.version>
		<spring-security-test.version>5.0.8.RELEASE</spring-security-test.version>
		<springframework.webflow.version>2.5.1.RELEASE</springframework.webflow.version>
		<springframework.boot.version>2.0.5.RELEASE</springframework.boot.version>
		<spring.data.version>2.0.10.RELEASE</spring.data.version>
		<spring.restdocs.version>2.0.3.RELEASE</spring.restdocs.version>


		<libsbml.version>1.0</libsbml.version>

		<commons-io.version>2.6</commons-io.version>

		<apache.commons-lang3.version>3.9</apache.commons-lang3.version>

		<apache.commons-text.version>1.6</apache.commons-text.version>

		<batik.version>1.11</batik.version>
		<xml-apis.version>1.4.01</xml-apis.version>

		<itext.version>5.5.13</itext.version>

		<libsbgn.version>0.2</libsbgn.version>

		<hibernate.version>5.3.6.Final</hibernate.version>
		<jboss-logging.version>3.4.0.Final</jboss-logging.version>
		<byte-buddy.version>1.9.10</byte-buddy.version>

		<pathvisio.version>3.2.0</pathvisio.version>

		<flyway.version>5.2.4</flyway.version>

		<commons-net.version>3.6</commons-net.version>

		<postgresql-jdbc.version>42.2.5</postgresql-jdbc.version>

		<hikari.version>3.3.1</hikari.version>
		<slf4jVersion>1.7.25</slf4jVersion>
		<log4j-slf4jVersion>2.11.2</log4j-slf4jVersion>

		<cglib.version>3.2.12</cglib.version>

		<gson.version>2.8.5</gson.version>

		<rs-jax.version>1.1.1</rs-jax.version>

		<jersey.version>1.19.4</jersey.version>

		<jackson.version>2.9.9</jackson.version>

		<servlet-api.version>3.1.0</servlet-api.version>

		<primafaces.version>6.2</primafaces.version>

		<jsf.version>2.2.19</jsf.version>

		<unboundid-ldapsdk.version>4.0.10</unboundid-ldapsdk.version>

		<jstl.version>1.2</jstl.version>

		<commons-fileupload.version>1.4</commons-fileupload.version>

		<commons-validator.version>1.6</commons-validator.version>

		<jsbml.version>1.5</jsbml.version>

		<chebi-ws.version>2.4</chebi-ws.version>

		<celldesigner.version>4.4</celldesigner.version>

		<reflections.version>0.9.11</reflections.version>

		<osgi.version>1.0.0</osgi.version>

		<junit.version>4.12</junit.version>

		<hamcrest.version>2.1</hamcrest.version>

		<surefire-api.version>2.22.2</surefire-api.version>

		<hsqldb.version>2.5.0</hsqldb.version>

		<git-commit-id-plugin.version>4.0.4</git-commit-id-plugin.version>

		<surefire.rerunFailingTestsCount>4</surefire.rerunFailingTestsCount>
		<checkstyle.version>3.1.1</checkstyle.version>
	</properties>

	<repositories>
		<repository>
			<id>central</id>
			<url>https://repo.maven.apache.org/maven2/</url>
		</repository>
		<repository>
			<id>prime-repo</id>
			<name>Prime Repo</name>
			<url>http://repository.primefaces.org</url>
		</repository>
		<!-- Repository used for chebi -->
		<repository>
			<id>ebi-repo</id>
			<name>The EBI internal repository</name>
			<url>http://www.ebi.ac.uk/~maven/m2repo</url>
			<releases>
				<enabled>true</enabled>
			</releases>
			<snapshots>
				<enabled>false</enabled>
			</snapshots>
		</repository>

	</repositories>

	<dependencies>
		<dependency>
			<groupId>org.apache.maven.surefire</groupId>
			<artifactId>surefire-api</artifactId>
			<version>${surefire-api.version}</version>
		</dependency>
	</dependencies>
	<modules>
		<module>model</module>
		<module>commons</module>
		<module>persist</module>
		<module>converter-CellDesigner</module>
		<module>converter-SBGNML</module>
		<module>converter-graphics</module>
		<module>annotation</module>
		<module>service</module>
		<module>web</module>
		<module>model-command</module>
		<module>pathvisio</module>
		<module>converter</module>
		<module>CellDesigner-plugin</module>
		<module>rest-api</module>
		<module>frontend-js</module>
		<module>converter-sbml</module>
	</modules>

	<build>
		<pluginManagement>
			<plugins>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-compiler-plugin</artifactId>
					<configuration>
						<source>1.8</source>
						<target>1.8</target>
					</configuration>
				</plugin>
			</plugins>
		</pluginManagement>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-checkstyle-plugin</artifactId>
				<version>${checkstyle.version}</version>
				<executions>
					<execution>
						<id>checkstyle</id>
						<phase>validate</phase>
						<configuration>
							<configLocation>checkstyle.xml</configLocation>
							<encoding>UTF-8</encoding>
							<failsOnError>true</failsOnError>
							<consoleOutput>true</consoleOutput>
							<includeTestSourceDirectory>true</includeTestSourceDirectory>
						</configuration>
						<goals>
							<goal>check</goal>
						</goals>
					</execution>
				</executions>
			</plugin>

			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-surefire-plugin</artifactId>
				<version>${surefire-api.version}</version>
				<configuration>
					<useSystemClassLoader>false</useSystemClassLoader>
					<surefire.rerunFailingTestsCount>4</surefire.rerunFailingTestsCount>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.jacoco</groupId>
				<artifactId>jacoco-maven-plugin</artifactId>
				<version>0.8.4</version>
				<executions>
					<execution>
						<goals>
							<goal>prepare-agent</goal>
						</goals>
					</execution>
					<execution>
						<id>generate-code-coverage-report</id>
						<phase>test</phase>
						<goals>
							<goal>report</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>

</project>