This project is mirrored from https://*****@github.com/LCSB-BioCore/SBML.jl.git.
Pull mirroring updated .
- 24 Aug, 2021 1 commit
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Miroslav Kratochvil authored
Update to Symbolics 3
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- 19 Aug, 2021 1 commit
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Chris Rackauckas authored
This requires using the safer symbolic variable definition via interpolation.
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- 18 Aug, 2021 3 commits
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Miroslav Kratochvil authored
simplify stoichiometry_matrix API & make it more efficient
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Miroslav Kratochvil authored
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Miroslav Kratochvil authored
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- 09 Aug, 2021 3 commits
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Miroslav Kratochvil authored
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Miroslav Kratochvil authored
Fix definition of units
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Mosè Giordano authored
The exponent applies to the multiplier as well. Reorganize the `get_unit` function to make it clearer what's the formula used.
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- 08 Aug, 2021 2 commits
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Miroslav Kratochvil authored
Make `sbml` slightly more type-stable
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Mosè Giordano authored
`Libdl.dlsym` can return `Union{Nothing, Ptr{Nothing}}`. We know that the symbols we use exist, and even if they didn't this change makes the function fail early instead of calling a `NULL` function in the shared library
💥
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- 03 Aug, 2021 6 commits
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Miroslav Kratochvil authored
separate reactants and product stoichiometries
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Miroslav Kratochvil authored
rational mathval
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Miroslav Kratochvil authored
closes #119
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Miroslav Kratochvil authored
closes #140
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Miroslav Kratochvil authored
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- 01 Aug, 2021 1 commit
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anand jain authored
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- 29 Jul, 2021 4 commits
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Miroslav Kratochvil authored
docstringextensions
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Miroslav Kratochvil authored
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Miroslav Kratochvil authored
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Miroslav Kratochvil authored
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- 28 Jul, 2021 1 commit
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anand jain authored
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- 27 Jul, 2021 2 commits
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Miroslav Kratochvil authored
support for logical operators
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Miroslav Kratochvil authored
Closes #133
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- 19 Jul, 2021 14 commits
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Miroslav Kratochvil authored
version bump to 0.6.0
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Miroslav Kratochvil authored
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Miroslav Kratochvil authored
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Miroslav Kratochvil authored
Rename some functions to something easier understand
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Miroslav Kratochvil authored
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Miroslav Kratochvil authored
Add function to read SBML model from a string
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Miroslav Kratochvil authored
Always pass `report_severities` argument to `check_errors`
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Mosè Giordano authored
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Miroslav Kratochvil authored
fix parsing of relational operators
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Mosè Giordano authored
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Mosè Giordano authored
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Miroslav Kratochvil authored
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Miroslav Kratochvil authored
Fix checking of errors in `libsbml_convert`
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Miroslav Kratochvil authored
fixes #124
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- 18 Jul, 2021 2 commits
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Mosè Giordano authored
* `getS` -> `stoichiometry_matrix` * `getLBs`, `getUBs` -> `flux_bounds` * `getOCs` -> `flux_objective`
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Mosè Giordano authored
The function [`SBMLDocument_convert`](http://sbml.org/Software/libSBML/5.18.0/docs/formatted/c-api/class_s_b_m_l_document__t.html#a96677d1b2225c23f3b3ab662a4e547e2) returns 0 when it is successful, other numbers otherwise.
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