Commits · 26c13d0adb6399a4856fde56dda175ce7496508a · LCSB-BioCore / SBML.jl

This project is mirrored from https://*****@github.com/LCSB-BioCore/SBML.jl.git. Pull mirroring updated Jan 30, 2023.

16 Mar, 2021 2 commits
- save the association to reaction struct · 26c13d0a
  Miroslav Kratochvil authored Mar 16, 2021
  
  26c13d0a
- read gene product associations · fbc19f90
  Miroslav Kratochvil authored Mar 16, 2021
  
  fbc19f90
15 Mar, 2021 12 commits
- Merge pull request #24 from LCSB-BioCore/mk-metadata · 744310aa
  Laurent Heirendt authored Mar 15, 2021
```
load more useful metadata
```
  744310aa
- update struct docs · e662b218
  Miroslav Kratochvil authored Mar 15, 2021
  
  e662b218
- cleaning: distinguish between missing and empty formula · d1fbeaf6
  Miroslav Kratochvil authored Mar 15, 2021
  
  d1fbeaf6
- document the new functions · da50e144
  Miroslav Kratochvil authored Mar 15, 2021
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(readModel has certainly grown a bit)
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  da50e144
- Merge pull request #23 from LCSB-BioCore/mk-fbc-params · 54a9390e
  Laurent Heirendt authored Mar 15, 2021
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read flux bounds and optimization coefficients from FBC extensions
```
  54a9390e
- bump version to 0.3 · 9b477ad3
  Miroslav Kratochvil authored Mar 15, 2021
  
  9b477ad3
- read FBC gene products · 9b8e9af2
  Miroslav Kratochvil authored Mar 15, 2021
```
Co-authored-by: st elmo <stelmozors@gmail.com>
```
  9b8e9af2
- extract freetext annotations · 2da1a154
  Miroslav Kratochvil authored Mar 15, 2021
  
  2da1a154
- document Maybe · 04d041b9
  Miroslav Kratochvil authored Mar 14, 2021
  
  04d041b9
- read notes from species, reactions and models · f2db233d
  St. Elmo authored Mar 14, 2021 and Miroslav Kratochvil committed Mar 15, 2021
```
Co-authored-by: Mirek Kratochvil <miroslav.kratochvil@uni.lu>
```
  f2db233d
- load FBC charges · 8b58a03a
  Miroslav Kratochvil authored Mar 14, 2021
  
  8b58a03a
- read FBC chemical formulae · 31e63fe7
  Miroslav Kratochvil authored Mar 14, 2021
  
  31e63fe7
14 Mar, 2021 2 commits
- read FBC objectives · e6d30729
  Miroslav Kratochvil authored Mar 14, 2021
  
  e6d30729
- support reading FBC flux bounds · 86df302a
  St. Elmo authored Mar 14, 2021 and Miroslav Kratochvil committed Mar 14, 2021
```
Co-authored-by: Mirek Kratochvil <miroslav.kratochvil@uni.lu>
```
  86df302a
01 Mar, 2021 1 commit
- Merge pull request #18 from LCSB-BioCore/mk-fix-nulls · d1a2ab50
  Laurent Heirendt authored Mar 01, 2021
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Fix problems for reactions that don't have kinetic laws associated
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  d1a2ab50
26 Feb, 2021 9 commits
- load and test models from multiple sources · e6d8f33f
  Miroslav Kratochvil authored Feb 24, 2021
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(Uses a few new models from EBI repository.)
```
  e6d8f33f
- update manifest · 6a5bf4db
  Miroslav Kratochvil authored Feb 26, 2021
  
  6a5bf4db
- test that EColi model from BIGG loads correctly · 0be94983
  Miroslav Kratochvil authored Feb 24, 2021
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this checks whether the fix of #16 works
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  0be94983
- fix null kinetic law · 8e78100e
  Miroslav Kratochvil authored Feb 23, 2021
  
  8e78100e
- Merge pull request #19 from LCSB-BioCore/mk-sparse · a085176e
  Laurent Heirendt authored Feb 26, 2021
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Support sparse S matrix output
```
  a085176e
- test if getS produces the expected matrix type · a99e4767
  Miroslav Kratochvil authored Feb 26, 2021
  
  a99e4767
- bump version to reflect the slight API change · 32131657
  Miroslav Kratochvil authored Feb 26, 2021
  
  32131657
- update docs · 9e39a896
  Miroslav Kratochvil authored Feb 26, 2021
  
  9e39a896
- output sparse S matrix · 39f0ea09
  Miroslav Kratochvil authored Feb 26, 2021
  
  39f0ea09
24 Feb, 2021 3 commits
- Merge pull request #15 from LCSB-BioCore/mk-acks · 2263ee90
  Laurent Heirendt authored Feb 24, 2021
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add permedcoe acknowledgement
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  2263ee90
- fix preposition · 1036624d
  Miroslav Kratochvil authored Feb 24, 2021
  
  1036624d
- Merge pull request #17 from LCSB-BioCore/error-reporting · 08ffba87
  Laurent Heirendt authored Feb 24, 2021
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Be more verbose when reporting SBML opening errors
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  08ffba87
23 Feb, 2021 3 commits
- add permedcoe acknowledgement · 56b86603
  Miroslav Kratochvil authored Feb 22, 2021
  
  56b86603
- reflect the change in tests · c9e68bc2
  Miroslav Kratochvil authored Feb 23, 2021
  
  c9e68bc2
- Be more verbose when reporting SBML opening errors · 8be4d18c
  Miroslav Kratochvil authored Feb 23, 2021
  
  8be4d18c
15 Feb, 2021 4 commits
- Merge pull request #14 from LCSB-BioCore/fix-link-doc · 83412adb
  Laurent Heirendt authored Feb 15, 2021
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fix link to doc
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  83412adb
- fix link to doc · 10373261
  Laurent Heirendt authored Feb 15, 2021
  
  10373261
- Merge pull request #13 from LCSB-BioCore/add-tagbot · dea5cce3
  Laurent Heirendt authored Feb 15, 2021
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add tagbot
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  dea5cce3
- add tagbot · c502e37a
  Laurent Heirendt authored Feb 15, 2021
  
  c502e37a
11 Feb, 2021 2 commits
- Merge pull request #10 from LCSB-BioCore/mk-fix-sha · 950feabf
  Miroslav Kratochvil authored Feb 11, 2021
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fix the sha256 checksum of the file in tests
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  950feabf
- fix the sha256 checksum of the file in tests · bdcdc4b4
  Miroslav Kratochvil authored Feb 11, 2021
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well, who'd say it's hashing the filename?
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  bdcdc4b4
10 Feb, 2021 2 commits
- Merge pull request #7 from LCSB-BioCore/add-travis · dc66bad7
  Laurent Heirendt authored Feb 10, 2021
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add travis CI
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  dc66bad7
- Revert "Revert "add Manifest"" · 08b06f7c
  Laurent Heirendt authored Feb 10, 2021
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This reverts commit 1c1b3a6f.
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  08b06f7c