Commit c8921adc authored by Miroslav Kratochvil's avatar Miroslav Kratochvil
Browse files

systematize the refs to the other packages

parent 455d2beb
......@@ -5,7 +5,17 @@
| ![CI](https://github.com/LCSB-BioCore/SBML.jl/workflows/CI/badge.svg?branch=master) | [![doc](https://img.shields.io/badge/docs-stable-blue)](https://lcsb-biocore.github.io/SBML.jl/stable) |
This is a simple wrap of some of the libSBML functionality, mainly the model loading for purposes of COBRA analysis methods.
This is a simple wrap of some of the libSBML functionality, mainly the model loading for purposes of COBRA analysis methods and exploration of ODE system and reaction dynamics.
You might like to try the packages that use SBML.jl; these now include:
- [COBREXA.jl](https://github.com/LCSB-BioCore/COBREXA.jl), the exascale-ready
constraint-based analysis and reconstruction toolkit for finding and modeling
steady metabolic fluxes with the models
- [SBMLToolkit.jl](https://github.com/SciML/SBMLToolkit.jl), for working with
the reaction dynamics of the models as ODE systems, well connected to the
[SciML](https://github.com/SciML)
[ModelingToolkit](https://github.com/SciML/ModelingToolkit.jl) ecosystem.
Other functionality will be added as needed. Feel free to submit a PR that increases the loading "coverage".
......@@ -44,5 +54,3 @@ There are several helper functions, for example you can get a nice list of react
```julia
mets, rxns, S = getS(m)
```
If you are looking to use dynamic SBML models with the Julia DifferentialEquations ecosystem, please refer to [SBMLToolkit.jl](https://github.com/SciML/SBMLToolkit.jl).
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