reformat code before release

src/converters.jl

@@ -73,10 +73,10 @@ readSBML("example.xml", libsbml_convert("stripPackage", package="layout"))
 ```
 """
 libsbml_convert(converter::String, report_severities = ["Fatal", "Error"]; kwargs...) =
-    libsbml_convert([
-        converter => Dict{String,String}(string(k) => string(v) for (k, v) in kwargs),
-    ],
-                    report_severities)
+    libsbml_convert(
+        [converter => Dict{String,String}(string(k) => string(v) for (k, v) in kwargs)],
+        report_severities,
+    )
 
 """
     convert_simplify_math

src/readsbml.jl

@@ -149,7 +149,8 @@ readSBMLFromString(
     str::AbstractString,
     sbml_conversion = document -> nothing;
     report_severities = ["Fatal", "Error"],
-)::SBML.Model = _readSBML(:readSBMLFromString, String(str), sbml_conversion, report_severities)
+)::SBML.Model =
+    _readSBML(:readSBMLFromString, String(str), sbml_conversion, report_severities)
 
 get_notes(x::VPtr)::Maybe{String} = get_optional_string(x, :SBase_getNotesString)
 get_annotation(x::VPtr)::Maybe{String} = get_optional_string(x, :SBase_getAnnotationString)

src/utils.jl

@@ -32,8 +32,7 @@ are accompanied with the unit of the corresponding value (this behavior is based
 specification).
 """
 flux_bounds(m::SBML.Model)::NTuple{2,Vector{Tuple{Float64,String}}} =
-    (broadcast(x -> x.lb, values(m.reactions)),
-     broadcast(x -> x.ub, values(m.reactions)))
+    (broadcast(x -> x.lb, values(m.reactions)), broadcast(x -> x.ub, values(m.reactions)))
 
 """
     flux_objective(m::SBML.Model)::Vector{Float64}
@@ -244,13 +243,14 @@ get_unit(u::VPtr) =
             sbml(:UnitKind_toString),
             Cstring,
             (Cint,),
-            ccall(sbml(:Unit_getKind), Cint, (VPtr,), u)
-        ))] ^
-    ccall(sbml(:Unit_getExponent), Cint, (VPtr,), u) *
+            ccall(sbml(:Unit_getKind), Cint, (VPtr,), u),
+        ),
+    )]^ccall(sbml(:Unit_getExponent), Cint, (VPtr,), u) *
     exp10(ccall(sbml(:Unit_getScale), Cint, (VPtr,), u)) *
     ccall(sbml(:Unit_getMultiplier), Cdouble, (VPtr,), u)
 
 # Get `Unitful` quantity out of a `UnitDefinition_t`.
-get_units(ud::VPtr) =
-    prod(get_unit(ccall(sbml(:UnitDefinition_getUnit), VPtr, (VPtr, Cuint), ud, j - 1))
-         for j = 1:ccall(sbml(:UnitDefinition_getNumUnits), Cuint, (VPtr,), ud))
+get_units(ud::VPtr) = prod(
+    get_unit(ccall(sbml(:UnitDefinition_getUnit), VPtr, (VPtr, Cuint), ud, j - 1)) for
+    j = 1:ccall(sbml(:UnitDefinition_getNumUnits), Cuint, (VPtr,), ud)
+)

test/loadmodels.jl

@@ -74,7 +74,10 @@ sbmlfiles = [
     ),
 ]
 
-@testset "Loading of models from various sources - $(reader)" for reader in (readSBML,  readSBMLFromString)
+@testset "Loading of models from various sources - $(reader)" for reader in (
+    readSBML,
+    readSBMLFromString,
+)
     for (sbmlfile, url, hash, expected_mets, expected_rxns) in sbmlfiles
         if !isfile(sbmlfile)
             Downloads.download(url, sbmlfile)
@@ -103,7 +106,9 @@ sbmlfiles = [
 end
 
 @testset "readSBMLFromString" begin
-    @test_logs (:error, r"^SBML reported error") @test_throws AssertionError readSBMLFromString("")
+    @test_logs (:error, r"^SBML reported error") @test_throws AssertionError readSBMLFromString(
+        "",
+    )
 end
 
 @testset "Time variables in math" begin
@@ -187,9 +192,11 @@ end
     @test test_math.args[2].fn == "sin"
     @test test_math.args[2].args[1].val == 2.1
 
-    @test_logs (:warn,) (:warn,) (:warn,) (:warn,) readSBML(joinpath(@__DIR__, "data", "01234-sbml-l3v2.xml"),
-             doc -> libsbml_convert("expandInitialAssignments", ["Fatal", "Error", "Warning"])(doc)
-             )
+    @test_logs (:warn,) (:warn,) (:warn,) (:warn,) readSBML(
+        joinpath(@__DIR__, "data", "01234-sbml-l3v2.xml"),
+        doc ->
+            libsbml_convert("expandInitialAssignments", ["Fatal", "Error", "Warning"])(doc),
+    )
 end
 
 @testset "relational operators are decoded correctly" begin